Carg23731 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23731
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	calmodulin
Location	Cucurbita_argyrosperma_scaffold_213 : 248512 .. 248715 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

mRNA sequence

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Coding sequence (CDS)

ATGGAGGAGGTCTTCAAGTTGATCGACGAGGACGGAGACGGACGGTTGAGTGTCGCCGATTTGAAGAGCTACATGCATTTCGACGGATTTTCGATCTCCGATGAGGAGGTTGTAGCGATGATTCGATTCGATGGCGGAGATGAATCGGACGGCGTAACTTATGACGGTTTGCTGAAGATTTTGGCTGTTGATAAGTTCTATTAG

Protein sequence

MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKILAVDKFY

Homology

[Close]

BLAST of Carg23731 vs. NCBI nr
Match: XP_022955465.1 (calmodulin-beta-like [Cucurbita moschata])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMHF GFSISDEEV AMIRF GGDESDGV+Y+GLLKI
Sbjct: 85  MEEVFKTMDKDGDGRLSHADLKSYMHFAGFSISDEEVEAMIRFGGGDESDGVSYEGLLKI 144

Query: 61  LAVDKFY 68
           L+VD  Y
Sbjct: 145 LSVDNVY 151

[Close]

BLAST of Carg23731 vs. NCBI nr
Match: XP_022979972.1 (calmodulin-A-like [Cucurbita maxima])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-22
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMHF GFSISDEEV AMI+F GGDESDGV+Y+GLLKI
Sbjct: 85  MEEVFKTMDKDGDGRLSHADLKSYMHFAGFSISDEEVEAMIKFGGGDESDGVSYEGLLKI 144

Query: 61  LAVDKFY 68
           LAVD  Y
Sbjct: 145 LAVDNVY 151

[Close]

BLAST of Carg23731 vs. NCBI nr
Match: XP_008438964.1 (PREDICTED: calmodulin [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 9.8e-22
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 88  MEEVFKTMDKDGDGRLSHADLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 147

Query: 61  LAVDKFY 68
           LA+D  Y
Sbjct: 148 LAIDNMY 154

[Close]

BLAST of Carg23731 vs. NCBI nr
Match: XP_023526324.1 (calmodulin-beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 9.8e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMHF GFSISDEEV AMIRF GGD+SDGV+Y+GLLKI
Sbjct: 85  MEEVFKTMDKDGDGRLSHADLKSYMHFAGFSISDEEVEAMIRFGGGDDSDGVSYEGLLKI 144

Query: 61  LAVDKFY 68
           L+VD  Y
Sbjct: 145 LSVDNVY 151

[Close]

BLAST of Carg23731 vs. NCBI nr
Match: XP_004134248.1 (PREDICTED: calmodulin-A [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS  DLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 89  MEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 148

Query: 61  LAVDKFY 68
           LAVD  Y
Sbjct: 149 LAVDNMY 155

[Close]

BLAST of Carg23731 vs. TAIR10
Match: AT5G49480.1 (Ca2+-binding protein 1)

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-16
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           M++VFK++D+DGDGRLS  DLKSYM   G +++D+E+ +MIR  GGD +DGV++DGLLKI
Sbjct: 98  MKDVFKVMDKDGDGRLSYGDLKSYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]

BLAST of Carg23731 vs. Swiss-Prot
Match: sp|Q9FDX6|CP1_ARATH (Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.9e-15
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           M++VFK++D+DGDGRLS  DLKSYM   G +++D+E+ +MIR  GGD +DGV++DGLLKI
Sbjct: 98  MKDVFKVMDKDGDGRLSYGDLKSYMDSAGLAVTDDEIKSMIRLAGGDLNDGVSFDGLLKI 157

[Close]

BLAST of Carg23731 vs. TrEMBL
Match: tr|A0A1S3AXP3|A0A1S3AXP3_CUCME (calmodulin OS=Cucumis melo OX=3656 GN=LOC103483899 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.5e-22
Identity = 54/67 (80.60%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS ADLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 88  MEEVFKTMDKDGDGRLSHADLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 147

Query: 61  LAVDKFY 68
           LA+D  Y
Sbjct: 148 LAIDNMY 154

[Close]

BLAST of Carg23731 vs. TrEMBL
Match: tr|A0A0A0L828|A0A0A0L828_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G167380 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           MEEVFK +D+DGDGRLS  DLKSYMH  GFSISDEEV AMIRF GGDESDGV Y+GLLKI
Sbjct: 110 MEEVFKTMDKDGDGRLSHGDLKSYMHLAGFSISDEEVTAMIRFGGGDESDGVCYEGLLKI 169

Query: 61  LAVDKFY 68
           LAVD  Y
Sbjct: 170 LAVDNMY 176

[Close]

BLAST of Carg23731 vs. TrEMBL
Match: tr|A0A061EP14|A0A061EP14_THECC (Ca2+-binding protein 1 OS=Theobroma cacao OX=3641 GN=TCM_021387 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VFK++D+DGDGRLS  DLKSYM++ GFS SDE++ AMIR  GGDE++GV++DGLLKI
Sbjct: 102 MEDVFKVMDKDGDGRLSHEDLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKI 161

Query: 61  LAVD 65
           LAVD
Sbjct: 162 LAVD 165

[Close]

BLAST of Carg23731 vs. TrEMBL
Match: tr|A0A2P4K6H1|A0A2P4K6H1_QUESU (Squidulin OS=Quercus suber OX=58331 GN=CFP56_61540 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+VF+++D+DGDG+LS  DLKSYM + GFS +DE++ AMIR  GGDE DGV+YDGLLKI
Sbjct: 94  MEDVFRIMDKDGDGKLSHEDLKSYMEWAGFSANDEDIRAMIRLGGGDEKDGVSYDGLLKI 153

Query: 61  LAVD 65
           LA+D
Sbjct: 154 LAID 157

[Close]

BLAST of Carg23731 vs. TrEMBL
Match: tr|A0A1R3GK73|A0A1R3GK73_9ROSI (Calcium-binding EF-hand OS=Corchorus olitorius OX=93759 GN=COLO4_34598 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1   MEEVFKLIDEDGDGRLSVADLKSYMHFDGFSISDEEVVAMIRFDGGDESDGVTYDGLLKI 60
           ME+ FK++D+DGDGRLS  DLKSYM++ GFS SDE++ AMIR  GGDE++GV++DGLLKI
Sbjct: 98  MEDAFKVMDKDGDGRLSHQDLKSYMNWAGFSASDEDIKAMIRLGGGDENEGVSFDGLLKI 157

Query: 61  LAVD 65
           LAVD
Sbjct: 158 LAVD 161

The following BLAST results are available for this feature:

BLAST of Carg23731 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955465.1	4.4e-22	82.09	calmodulin-beta-like [Cucurbita moschata]	[more]
XP_022979972.1	4.4e-22	82.09	calmodulin-A-like [Cucurbita maxima]	[more]
XP_008438964.1	9.8e-22	80.60	PREDICTED: calmodulin [Cucumis melo]	[more]
XP_023526324.1	9.8e-22	80.60	calmodulin-beta-like [Cucurbita pepo subsp. pepo]	[more]
XP_004134248.1	2.2e-21	80.60	PREDICTED: calmodulin-A [Cucumis sativus]	[more]

BLAST of Carg23731 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49480.1	4.4e-16	60.00	Ca2+-binding protein 1	[more]

BLAST of Carg23731 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FDX6\|CP1_ARATH	7.9e-15	60.00	Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1	[more]

BLAST of Carg23731 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXP3\|A0A1S3AXP3_CUCME	6.5e-22	80.60	calmodulin OS=Cucumis melo OX=3656 GN=LOC103483899 PE=4 SV=1	[more]
tr\|A0A0A0L828\|A0A0A0L828_CUCSA	1.4e-21	80.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G167380 PE=4 SV=1	[more]
tr\|A0A061EP14\|A0A061EP14_THECC	3.7e-17	70.31	Ca2+-binding protein 1 OS=Theobroma cacao OX=3641 GN=TCM_021387 PE=4 SV=1	[more]
tr\|A0A2P4K6H1\|A0A2P4K6H1_QUESU	1.1e-16	67.19	Squidulin OS=Quercus suber OX=58331 GN=CFP56_61540 PE=4 SV=1	[more]
tr\|A0A1R3GK73\|A0A1R3GK73_9ROSI	1.1e-16	68.75	Calcium-binding EF-hand OS=Corchorus olitorius OX=93759 GN=COLO4_34598 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23731-RA	Carg23731-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 1..26 e-value: 3.8E-6 score: 26.3
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 1..31 score: 13.063
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 1..65 e-value: 4.9E-10 score: 41.5
None	No IPR available	PANTHER	PTHR45298	FAMILY NOT NAMED	coord: 1..65
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 9..21
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 2..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23731	Cla021803	Watermelon (97103) v1	carwmB0953
Carg23731	Csa3G167380	Cucumber (Chinese Long) v2	carcuB0967
Carg23731	MELO3C006721	Melon (DHL92) v3.5.1	carmeB0934
Carg23731	ClCG05G006630	Watermelon (Charleston Gray)	carwcgB0929
Carg23731	CSPI03G15050	Wild cucumber (PI 183967)	carcpiB0989
Carg23731	Cucsa.252480	Cucumber (Gy14) v1	carcgyB1072
Carg23731	CmaCh06G015660	Cucurbita maxima (Rimu)	carcmaB1307
Carg23731	CmaCh14G015850	Cucurbita maxima (Rimu)	carcmaB1304
Carg23731	CmoCh06G015620	Cucurbita moschata (Rifu)	carcmoB1276
Carg23731	Cp4.1LG03g11850	Cucurbita pepo (Zucchini)	carcpeB1320
Carg23731	Cp4.1LG08g05340	Cucurbita pepo (Zucchini)	carcpeB1321
Carg23731	CsGy3G015180	Cucumber (Gy14) v2	carcgybB0939
Carg23731	MELO3C006721.2	Melon (DHL92) v3.6.1	carmedB0940
Carg23731	CsaV3_3G015240	Cucumber (Chinese Long) v3	carcucB0995
Carg23731	Cla97C05G088220	Watermelon (97103) v2	carwmbB1003
Carg23731	Bhi01G000788	Wax gourd	carwgoB1105

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23731	Carg19616	Silver-seed gourd	carcarB318

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23731	Cucurbita maxima (Rimu)	carcmaB1305