Cp4.1LG08g00850 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Arginine/serine-rich splicing factor, putative
Location	Cp4.1LG08 : 3988538 .. 3992010 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTACAGTGAAAATACTAGGGCTTTCTTTTGGTATTTAAAATGAACTGAAAATTGGATCACATAGGGCTCTTCAAAAAGATACAGGCTTTCTCTTCCTCTCTCCTAGGGTTTTTCTTCTGTTCGAGTCCAAGAATCTGCAAGGTTTGTTTCTGCAATCATATGATCCATGCTATTCTAAGCATTTTTCATTCGCTACTTGATCGATTTACTTCTTGTTTCTGGTCAAACTCTGAAAGTGAGTTCTTCGTTAACGCATTCCTTTACCTCTCTTATCCCTTTGATCTCTTCTAGTTTAACTGGAAAAAGAATAGATATCACTATGTTGGTGAAGTTGTTTACTAGTTTCTTTTTATGGTCTTGTCATTTTGTTAATCTTGGGACTTGTTGGCTTTGTTTTCTACAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTATACTGCAATTTCTTTGTAATACCATGCAGTGCCGTTTTTAACGAAGATGTTCTAATGTTGAATATTTTTATTTCTAAGGTGGTATGAGGGAACTGTGGTGCTTACTTAAATTTTTTGTTTTTGTTTATTGTGAAACTGTAAATTTCCTTACCTAGTTTTGACATGCGAAGGTAATAGATGTATGGAAAAGACTGTGTTCAACTTGATTTAGGATATGCGTATTGGATGTTGCATTTGGATTACGGGGTATATTTTAATTTAATGCTGCAATATTCCCAGTGAACCACCTTCCTTTTGTAGTGTGTTGATCTTGGTATGGTGACATGGACCTGCATATATGTATGCATTCATGGATGACTTTATTGTTTTGGGTTTTACGAAGTATTGTCAAATGTTATTTCCTTGTTTAAACTTTCTAGTTGCTGATCTTTTTCTTGTTACTTATGGGCTTTTAGTTTCGCTTTCATTGTTTGTAATCATCTTAACTACTCTATATTTAAGTTCATAATTGTATAGTTGTCTTCTGGAATTTTCTTGTCTCTTACCCACCTTCCCTGACATCCTTAATCCTACGTAGTTATCGTTCAGTTAATGATTTTAGACATCTTGGGTTTTCTGGTGTATGAAATTATGGTATTTTAGTTCGAGGATGTTCCACTGGTGCTAATACTTGGTATTTCAGTGCGAGGATGCTCCACTGACGCTAATACTAGGTAAAAAAGTTGTGTCAAGTTTTTATCAATAAGACAAGAAATTGATGTTTTTTTTAAATTCTAAAACCCTGTTCAGTGACATGGATGCATAGCTATTATGCTATGATAATATCCGCTGGTCCATTTTTTCTGATGAAAACTTGATGGGAGGCAAAAATTTACTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTACTAAGGAAAATGAACCAAGCTCCTATCTGGGCTCATCACCATCTGTGCATAAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTAGCTTCATCTAAAGATATCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCTTCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCACGCCTCATCAATTAAGTCGCAATTCACCAGAATCGTCTTAATGGATGTTCTATATCTCATGCCTTGCCTACCTATCACCTCTGATCATAGGACATCACTGAATTCTGGTCATGCCTCCCATTTGATAATAGTGGCTGAATGAATCTGTCTTGCCATGCCTTCCATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGCATGGTTGAAATTTTGGATTAAAACCTTTAGTATGCAACCATCTTATTTCATCATGCAACGTCTCTACAGCTAAATGTGCATCAGTCCTACCATATTTTCAGGTGTTGTACTTTTTATAGTTTATCCCAGGGAAAGAAATCATGAGGCTGAGTGACAATACCTGCTAAATAGATAATGCTTCAATATCTTACCATATTTTATATATCTAATTGTTCTATTTTGTAGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTAGGCCTTTCTCCCACCGTTGTTGCCCCCTTTCTTGGGTCTATGCATTTTAGAAGCTGGTTTATTTCATGCTTTGAAAATATCTCTTTCTTTTCATATATGGCAACCAATAGTTGATTTTAACTTTAGCTTTTTGTTTGGTTGGGTTAGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGGTTAGCAGTGTTTTGGGTTTCCCACATGGTTGTTGCTCCTTTCAATTGGCATATTTAATTTCTTTCTCTAAAATACTGTATTGGCTTTATAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGGTAATTTTTTTTATCTTTTTCATAGTTGGCTCAGCTTCCATTTGAGTTGTTGTCACATATCTCTTTTAGCTTATAAATTCAAGCTAACTCCCCGTTTTTCATAACTATGTTGACAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGCTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGAATTAGTAGTTGCTTTGGTGTTAACGTTTTACCAAGGCTGTCCTGTCTTAACGATGTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCAATGCATGAGCTTTGTTGAATTCCCTCACTGAGGCCCTTTATCTTTCATCATCT

mRNA sequence

TATCTACAGTGAAAATACTAGGGCTTTCTTTTGGTATTTAAAATGAACTGAAAATTGGATCACATAGGGCTCTTCAAAAAGATACAGGCTTTCTCTTCCTCTCTCCTAGGGTTTTTCTTCTGTTCGAGTCCAAGAATCTGCAAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGCTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGAATTAGTAGTTGCTTTGGTGTTAACGTTTTACCAAGGCTGTCCTGTCTTAACGATGTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCAATGCATGAGCTTTGTTGAATTCCCTCACTGAGGCCCTTTATCTTTCATCATCT

Coding sequence (CDS)

ATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGA

Protein sequence

MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDYARNRSPEYGRYRSRSPIRRSRT

Homology

[Close]

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 331.3 bits (848), Expect = 9.4e-90
Identity = 182/263 (69.20%), Postives = 205/263 (77.95%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 180
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 181 A---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSP------- 240
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SP       
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 241 DYARNRSPEYGRYRSRSPIRRSR 249
           DY R RSP Y RYRSRSP+ R R
Sbjct: 241 DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.9e-84
Identity = 172/250 (68.80%), Postives = 199/250 (79.60%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 181 RRAAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDYARNRSP 240
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPDY R RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 236

Query: 241 EYGRYRSRSP 244
           +YGR R+RSP
Sbjct: 241 DYGRARARSP 236

[Close]

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-66
Identity = 146/266 (54.89%), Postives = 184/266 (69.17%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIHTRVRDIERHFEP 120
           G   RRL VEW + ERG   R   GS+ S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 180
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +  S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH--S 180

Query: 181 PRRAAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDYARNR---- 240
           P R     P     RRSPSP +R R SPDYG  +     Y   R+ R SPDY R R    
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 241 -------SPEYGRYR--SRSPIRRSR 249
                  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-66
Identity = 145/275 (52.73%), Postives = 181/275 (65.82%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+S+LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD  +TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GK++NVRIRRNF+F+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 RR-----------AAYGRPGDSP-YRRSPSPL---RRRPSPDYGPR------------SP 240
           RR           + Y R   SP Y R  SP+   R R SPDYG              SP
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP 240

Query: 241 AYDRYNGPRERRKSPDYA--RNRSPEYGRYRSRSP 244
            Y R +  RER  SP+    RNRSP  GR  SRSP
Sbjct: 241 DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275

[Close]

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 83/266 (31.20%), Postives = 113/266 (42.48%), Query Frame = 1


Query: 4   IFVGNFGYDTRQSELERAFAKYGRVDRIDMKSG----FAFVYFEDERDADDAIRGLDNMP 63
           ++VGN   D R+ E+E  F KYGR+  +D+KSG    FAFV FED RDA+DA+R  D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 64  FGHDRRRLSVEWARG------------ERGRH--------RDGSKSMANQRPTKTLFVIN 123
           F  D RR+ VE+ RG            + G H        R G +    QR T    ++ 
Sbjct: 71  F--DGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 124 FDPIHTRVRDIERHFEPYGKVLNVRIRRN-FSFVQFETQEEATKALECTHMSKILDRVVS 183
             P     +D++ H    G V    + R+    V+F   E+   A+     +K       
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 190

Query: 184 VEY-ALRDDGERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNG 243
             Y  +R+D   G          + G   D    RSP    RR SP Y PR         
Sbjct: 191 TAYIRVREDNSSGG--------GSGGGGRDRSRSRSPR-AERRASPKYSPR--------- 250

[Close]

BLAST of Cp4.1LG08g00850 vs. TrEMBL
Match: A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.0e-124
Identity = 229/253 (90.51%), Postives = 242/253 (95.65%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEY-G 240
             YGRPGDSPYRRSPSP+ RRRPSPDYG   SPAYDRYNGP ERR+SPDY RNRSPEY G
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RYRSRSPIRRSRT 250
           R+RSRSPIRRSRT
Sbjct: 241 RFRSRSPIRRSRT 253

[Close]

BLAST of Cp4.1LG08g00850 vs. TrEMBL
Match: A0A067K840_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14221 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 8.2e-109
Identity = 207/252 (82.14%), Postives = 226/252 (89.68%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           ++P+FVGNF YDTRQS+LER F+KYGRVDR+DMKSGFAFVYFEDERDA  AIRGLDN PF
Sbjct: 3   LRPVFVGNFEYDTRQSDLERLFSKYGRVDRVDMKSGFAFVYFEDERDAAGAIRGLDNTPF 62

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGS+SMANQRPTKTLFVINFDPI TRV DI+RHFE YG+V
Sbjct: 63  GYDRRRLSVEWARGERGRHRDGSRSMANQRPTKTLFVINFDPIRTRVEDIKRHFERYGEV 122

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGE+GD Y DSPRR 
Sbjct: 123 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGEKGDRY-DSPRRG 182

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +Y       Y RSPSP+ RRRPSPDY G RSP YD+YNGP  +RR+SPDY RNRSPEYGR
Sbjct: 183 SY-------YGRSPSPVYRRRPSPDYGGARSPVYDKYNGPAYDRRRSPDYGRNRSPEYGR 242

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 243 YRSRSPIRRSRT 246

[Close]

BLAST of Cp4.1LG08g00850 vs. TrEMBL
Match: W9S2E8_9ROSA (Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.2e-106
Identity = 200/242 (82.64%), Postives = 219/242 (90.50%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYG V+R+DMKSGFAFVYF+D+RDA+DAIRGLD+ PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGPVERVDMKSGFAFVYFDDDRDAEDAIRGLDSRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRHRDGS+   NQRPTKTLFVINFDP+HTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRP--NQRPTKTLFVINFDPLHTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKI+DRVVSVEYAL+DD ERGD Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKIIDRVVSVEYALKDDDERGDRYYDSPRRG 180

Query: 181 AYGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
            YGR   SPYRRSPSP  RRRPSPDYG PRSP YDRY+GP  +RRKSP Y RN SPEYGR
Sbjct: 181 GYGR--HSPYRRSPSPAYRRRPSPDYGRPRSPVYDRYDGPAYDRRKSPGYGRNISPEYGR 238

[Close]

BLAST of Cp4.1LG08g00850 vs. TrEMBL
Match: A0A068UJD0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027680001 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.0e-106
Identity = 204/252 (80.95%), Postives = 221/252 (87.70%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+F GNF Y+TRQS+LER F+KYGRV+R+DMKSGFAFVYFEDERDA+DAIRGLDN PF
Sbjct: 1   MRPVFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNAPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           GHDRRRLSVEWA+GERGRHRD S+SM NQRPTKTLFVINFDPI TR+RDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWAKGERGRHRDSSRSMVNQRPTKTLFVINFDPIRTRIRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGD Y DSPRR 
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDRY-DSPRR- 180

Query: 181 AYGRPGDSPYRRSPSPL--RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEYGR 240
            YG  G SPYRRSPSP+  R R SPDYG  RSP YD+YNGP ERR        RSPEY R
Sbjct: 181 DYGGRGGSPYRRSPSPVYRRGRASPDYGHVRSPVYDKYNGPYERR--------RSPEYDR 240

Query: 241 YRSRSPIRRSRT 250
           +RSRSP+RRSRT
Sbjct: 241 HRSRSPVRRSRT 242

[Close]

BLAST of Cp4.1LG08g00850 vs. TrEMBL
Match: V4U1V1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021673mg PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-104
Identity = 204/269 (75.84%), Postives = 224/269 (83.27%), Query Frame = 1


Query: 2   KPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFG 61
           +PIFVGNF Y+TRQSELER F+KYGR++R+DMKSGFAFVYFED+RDA DAIRGLDN+PFG
Sbjct: 3   RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62

Query: 62  HDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVL 121
           +DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TR RDI+RHFEPYG VL
Sbjct: 63  YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122

Query: 122 NVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRAA 181
           +VRIRRNF+FVQFETQEEATKALE T  SK++DRV+SVEYAL+DD ER D Y DSPRR  
Sbjct: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 182

Query: 182 YGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGP-------------------RE 241
           YGR   SPY RSPSP  RRRPSPDYG  RSPAYDRYNGP                    +
Sbjct: 183 YGR--HSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYD 242

Query: 242 RRKSPDYARNRSPEYGRYRSRSPIRRSRT 250
           RR+SPDY RNRSP +GRYRSRSP+RRSRT
Sbjct: 243 RRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268

[Close]

BLAST of Cp4.1LG08g00850 vs. TAIR10
Match: AT3G61860.1 (AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 331.3 bits (848), Expect = 5.3e-91
Identity = 182/263 (69.20%), Postives = 205/263 (77.95%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 180
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 181 A---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSP------- 240
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SP       
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 241 DYARNRSPEYGRYRSRSPIRRSR 249
           DY R RSP Y RYRSRSP+ R R
Sbjct: 241 DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cp4.1LG08g00850 vs. TAIR10
Match: AT2G46610.1 (AT2G46610.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-85
Identity = 172/250 (68.80%), Postives = 199/250 (79.60%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 181 RRAAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDYARNRSP 240
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPDY R RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 236

Query: 241 EYGRYRSRSP 244
           +YGR R+RSP
Sbjct: 241 DYGRARARSP 236

[Close]

BLAST of Cp4.1LG08g00850 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-67
Identity = 146/266 (54.89%), Postives = 184/266 (69.17%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIHTRVRDIERHFEP 120
           G   RRL VEW + ERG   R   GS+ S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 180
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +  S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH--S 180

Query: 181 PRRAAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDYARNR---- 240
           P R     P     RRSPSP +R R SPDYG  +     Y   R+ R SPDY R R    
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 241 -------SPEYGRYR--SRSPIRRSR 249
                  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of Cp4.1LG08g00850 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 145/275 (52.73%), Postives = 181/275 (65.82%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+S+LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD  +TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GK++NVRIRRNF+F+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 RR-----------AAYGRPGDSP-YRRSPSPL---RRRPSPDYGPR------------SP 240
           RR           + Y R   SP Y R  SP+   R R SPDYG              SP
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP 240

Query: 241 AYDRYNGPRERRKSPDYA--RNRSPEYGRYRSRSP 244
            Y R +  RER  SP+    RNRSP  GR  SRSP
Sbjct: 241 DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275

[Close]

BLAST of Cp4.1LG08g00850 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 88/277 (31.77%), Postives = 116/277 (41.88%), Query Frame = 1


Query: 2   KPIFVGNFGYDTRQSELERAFAKYGRVDRIDMK-----SGFAFVYFEDERDADDAIRGLD 61
           + ++VGN   D R+ E+E  F+KYG V +ID+K      G+AFV F+D RDA+DAI G D
Sbjct: 7   RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66

Query: 62  NMPFGHDRRRLSVEWARGER-----------------GRHRDGSKSMANQRPTKTLFVIN 121
              F  D  RL VE A G R                 GR R    S    R ++   ++ 
Sbjct: 67  GYDF--DGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVT 126

Query: 122 FDPIHTRVRDIERHFEPYGKVLNVRIRRN-------FSFVQFETQEEATKALECTHMSKI 181
             P     +D++ H    G V   ++ R+         +  +E  + A K L+ T     
Sbjct: 127 GLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNA 186

Query: 182 LDR--VVSVEYALRDDG---ERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGP 241
                V   EY  R D     RG  Y  S R  + GR       RS S   R P      
Sbjct: 187 FSNGYVRVREYDSRKDSRSPSRGRSYSKS-RSRSRGRSVSRSRSRSRS-RSRSPKAKSSR 246

Query: 242 RSPAYDRYNGPRERRKSPDYARNRSPEYGRYRSRSPI 245
           RSPA      P  R KS    R+ SP   R RSRSP+
Sbjct: 247 RSPAKSTSRSPGPRSKS----RSPSPRRSRSRSRSPL 275

[Close]

BLAST of Cp4.1LG08g00850 vs. NCBI nr
Match: gi|449432024|ref|XP_004133800.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 229/253 (90.51%), Postives = 242/253 (95.65%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEY-G 240
             YGRPGDSPYRRSPSP+ RRRPSPDYG   SPAYDRYNGP ERR+SPDY RNRSPEY G
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RYRSRSPIRRSRT 250
           R+RSRSPIRRSRT
Sbjct: 241 RFRSRSPIRRSRT 253

[Close]

BLAST of Cp4.1LG08g00850 vs. NCBI nr
Match: gi|1009142455|ref|XP_015888731.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 424.1 bits (1089), Expect = 1.7e-115
Identity = 216/252 (85.71%), Postives = 233/252 (92.46%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF YDTRQSELER F+KYGRV+R+DMKSGFAFVYFEDERDA+DAIRGLDN PF
Sbjct: 1   MRPVFVGNFEYDTRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRD S+  ANQRPTKTLFVINFDP+ TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDDSRLSANQRPTKTLFVINFDPLRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYAL+DDGERGD Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALKDDGERGDRY-DSPRRG 180

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +YGR GDSPY RSPSPL RRRPSPDYG PRSPAYDRYNG   ++R+SPDY RN SPEYGR
Sbjct: 181 SYGRRGDSPYGRSPSPLYRRRPSPDYGRPRSPAYDRYNGSSYDKRRSPDYGRNLSPEYGR 240

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 241 YRSRSPIRRSRT 251

[Close]

BLAST of Cp4.1LG08g00850 vs. NCBI nr
Match: gi|645254569|ref|XP_008233099.1| (PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume])

HSP 1 Score: 418.7 bits (1075), Expect = 7.1e-114
Identity = 209/252 (82.94%), Postives = 232/252 (92.06%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQSELER F+K+GRVDR+DMKSGFAFVYFEDERDA+DAI+ LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKHGRVDRVDMKSGFAFVYFEDERDAEDAIQNLDNKPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRH DGSKS+ANQRPTKTLFVINFDP+ T+VRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHHDGSKSVANQRPTKTLFVINFDPLRTKVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQF+TQEEATKALE TH SKILDRVVSVEYALRDDGERGD Y DSP+R 
Sbjct: 121 LHVRIRRNFAFVQFDTQEEATKALEATHASKILDRVVSVEYALRDDGERGDRYHDSPKRG 180

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGP-RERRKSPDYARNRSPEYGR 240
           +YGR GDSP+ RSPSP+ RRRPSPDYG PRSPAYDRYNGP  +R +SPDY RN SPEYGR
Sbjct: 181 SYGRRGDSPFGRSPSPVYRRRPSPDYGRPRSPAYDRYNGPVYDRHRSPDYGRNESPEYGR 240

Query: 241 YRSRSPIRRSRT 250
           YRSRSP+RRSRT
Sbjct: 241 YRSRSPVRRSRT 252

[Close]

BLAST of Cp4.1LG08g00850 vs. NCBI nr
Match: gi|694400704|ref|XP_009375433.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 406.4 bits (1043), Expect = 3.7e-110
Identity = 207/258 (80.23%), Postives = 231/258 (89.53%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQSEL+R F+KYGR++R+DMKSGFAFVYFEDERDA++AI  LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSELDRLFSKYGRIERVDMKSGFAFVYFEDERDAEEAIHHLDNRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRH DGSKS+ANQRPTKTLFVINFDP+HT+VRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHHDGSKSLANQRPTKTLFVINFDPVHTKVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDG-----ERGDPYDD 180
           L+VRIRRNF+FVQF+TQEEATKAL+ TH+SKILDRVVSVEYALRDD      ERGD Y D
Sbjct: 121 LHVRIRRNFAFVQFDTQEEATKALQATHLSKILDRVVSVEYALRDDSERGDVERGDRYRD 180

Query: 181 S-PRRAAYGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGP-RERRKSPDYARNR 240
           S PRR +YGR GDSPY RSPSP  RRRPSPDYG PRSP YDRYNGP  +RR+SP+Y RN 
Sbjct: 181 SPPRRGSYGRRGDSPYGRSPSPGYRRRPSPDYGRPRSPVYDRYNGPVYDRRRSPEYGRNE 240

Query: 241 SPEYGRYRSRSPIRRSRT 250
           SPEYGRYRSRSPIRRSRT
Sbjct: 241 SPEYGRYRSRSPIRRSRT 258

[Close]

BLAST of Cp4.1LG08g00850 vs. NCBI nr
Match: gi|802694339|ref|XP_012083147.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like [Jatropha curcas])

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 207/252 (82.14%), Postives = 226/252 (89.68%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           ++P+FVGNF YDTRQS+LER F+KYGRVDR+DMKSGFAFVYFEDERDA  AIRGLDN PF
Sbjct: 3   LRPVFVGNFEYDTRQSDLERLFSKYGRVDRVDMKSGFAFVYFEDERDAAGAIRGLDNTPF 62

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGS+SMANQRPTKTLFVINFDPI TRV DI+RHFE YG+V
Sbjct: 63  GYDRRRLSVEWARGERGRHRDGSRSMANQRPTKTLFVINFDPIRTRVEDIKRHFERYGEV 122

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGE+GD Y DSPRR 
Sbjct: 123 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGEKGDRY-DSPRRG 182

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +Y       Y RSPSP+ RRRPSPDY G RSP YD+YNGP  +RR+SPDY RNRSPEYGR
Sbjct: 183 SY-------YGRSPSPVYRRRPSPDYGGARSPVYDKYNGPAYDRRRSPDYGRNRSPEYGR 242

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 243 YRSRSPIRRSRT 246

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS31_ARATH	9.4e-90	69.20	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 S...	[more]
RS31A_ARATH	5.9e-84	68.80	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2...	[more]
RS40_ARATH	1.9e-66	54.89	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 S...	[more]
SRS41_ARATH	2.5e-66	52.73	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 S...	[more]
RSP3_CAEEL	1.7e-14	31.20	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rs...	[more]

BLAST of Cp4.1LG08g00850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8H4_CUCSA	9.0e-124	90.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1	[more]
A0A067K840_JATCU	8.2e-109	82.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14221 PE=4 SV=1	[more]
W9S2E8_9ROSA	2.2e-106	82.64	Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=...	[more]
A0A068UJD0_COFCA	5.0e-106	80.95	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027680001 PE=4 SV=1	[more]
V4U1V1_9ROSI	1.2e-104	75.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021673mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61860.1	5.3e-91	69.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	3.3e-85	68.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	1.1e-67	54.89	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	1.4e-67	52.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.1	1.1e-14	31.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG08g00850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432024\|ref\|XP_004133800.1\|	1.3e-123	90.51	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus...	[more]
gi\|1009142455\|ref\|XP_015888731.1\|	1.7e-115	85.71	PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus j...	[more]
gi\|645254569\|ref\|XP_008233099.1\|	7.1e-114	82.94	PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume]	[more]
gi\|694400704\|ref\|XP_009375433.1\|	3.7e-110	80.23	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Pyrus x bretsch...	[more]
gi\|802694339\|ref\|XP_012083147.1\|	1.2e-108	82.14	PREDICTED: serine/arginine-rich splicing factor RS31-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
biological_process	GO:0018149	peptide cross-linking
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00850.1	Cp4.1LG08g00850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 95..157 score: 1.2E-10coord: 4..62 score: 2.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..70 score: 6.2E-15coord: 94..160 score: 3.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..74 score: 16.909coord: 93..164 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 75..170 score: 3.1E-19coord: 4..74 score: 9.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..166 score: 9.46
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 4..218 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00850	CmaCh00G005870	Cucurbita maxima (Rimu)	cmacpeB014
Cp4.1LG08g00850	CmaCh14G021260	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g00850	CmaCh06G009810	Cucurbita maxima (Rimu)	cmacpeB848
Cp4.1LG08g00850	CmoCh14G021870	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g00850	CmoCh06G010240	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00850	Cla021132	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00850	Csa3G119350	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00850	MELO3C006002	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00850	Lsi05G021500	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g00850	MELO3C006002.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00850	Bhi01G000378	Wax gourd	cpewgoB1105
Cp4.1LG08g00850	Carg25710	Silver-seed gourd	carcpeB0180
Cp4.1LG08g00850	Carg20910	Silver-seed gourd	carcpeB1380

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g00850	Cp4.1LG03g15890	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00850	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00850	Cucurbita maxima (Rimu)	cmacpeB015
Cp4.1LG08g00850	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00850	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g00850	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00850	Cucumber (Gy14) v2	cgybcpeB704
Cp4.1LG08g00850	Melon (DHL92) v3.6.1	cpemedB929
Cp4.1LG08g00850	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00850	Cucumber (Chinese Long) v3	cpecucB1071
Cp4.1LG08g00850	Wax gourd	cpewgoB1098