Cla021132 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021132
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Arginine/serine-rich splicing factor 31 (AHRD V1 **-- D7LSQ1_ARALL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Location	Chr5 : 670114 .. 672782 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCTATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCGCCAAATACGGGAGAGTTGAAAGGATCGACATGAAATCTGGTATATTACAATTTCTTTGCTATAGTATGCAATGCCATTTTAAACGATCATGTTATAAGATAGGTCATAACTTGTGCAGATTATATTGTACGAAGGATCCCTTTTTGTGGTCAGCTTCGAACGAATTGATTCTGTTGAATATTGCTCTTAAAACCTCTTTTTTGGTATTGACAATGGTGTAATGAGTGGGATGCAATGCTTGCTTAATTTATTTTTTGTTCAATGTGAAATTATGTCAAGATAATAGATGTACCAAAAGGATCTTGTTCATTTTGGTTAAGTTCATACGCATTGGATGGTGCATTTGGATAATTGGTGTATGTTTTTATTTGAAATCTTCGATGTTCCCTAAGAATCATACTTTTGTTGTGTGTCAGAGTGTGGTAGGCTACGTATGTATGCATTGATGGATGACACTTTGGTGTTGGTTTTACTTAGTATTGGCAAGTAGAATTCATACTTTTAAGCTTCCTAGTTTGGAATTTTTTTGTTACATGTGACTTTTTTGTACTTTGATTTCATCATTCGAATCATCTTACCTTTTCCTTTTTAACTGACCTTGGTTACTCTGGGTATGAGTTTTTAATGACGTTTATTTTCTTGATAACTTCCTTGGCCCTCACTCACCTTGCCTTACATCCTTAGTCTTACAAAGATATATTTCAATTTTTTGGGTATAGGGGTTTATTGATTTGTGGTATTTCAGCGGGAGGCTACTCCACTGATACTAACACTAATTGTAAAAGTAATATCACATTTTTATCAATAAAATTGATGTTTTTTAAATAATAAAATCCAGTTCAGTGACATGGATGCATAGCTATTATGCTATGAATAACATCCAATGGTCCATTTTTCTGATGAAAACTTAATGGCAGGCACAATTGCTATTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTCCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATGACACCATCTGTGCATAAAAATTAATTTGGAAGGAAACTTCCTGCTTGACTGCTTAGCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATCATTCATCTACCTCTTCACTTAAGTTGCAATTCACCAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCATCAGAATCGTGTTAATGGATTGATCTTTATCTCATGCCTTGCCTAGCTATCACCACTGATCATAGGACATCACTGAAATCTGATCATGCCTTCCACATATGATAATAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCCATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGGATAGTTGAAATTTTGGATTAAAACCTTTAGTAGGCAACCATCTTAGTCCATCATGCAACGTCTCTACCGCTATATGAGCATCAGTCCTCCCGTATTTGCAGGTGTTGTATTTTTTATAGTTTATCCTAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGAAAGAAATCACGAGGCTGAGTGACAATACCTGCTAGATGGATGATGCTTCAACAGCTTACCAGTTTTATATATCTTATTGTTATTTTTTTTTGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTTAGACCTCTCTCACTACATTCTTCTGTCCCTCCTTGCCCTTCCTTTTGGGTTTATGTATTTTAGAAGCTGGTTTATTTCATGTTCGGAAGATGGGTCATTTTATTCTAACTTTTGGTTTGAATGGATTAGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGGTAAGCCGAGTTTTGATTCTCCCGCATGCTTTCTCTTTTCATTTGGTGTATTTATTTCCTTCTCTCTTATGGACGTGAAATATTGTATTGTGCCTTGTAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

mRNA sequence

ATGAGGCCTATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCGCCAAATACGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

Coding sequence (CDS)

ATGAGGCCTATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGCTTATTCGCCAAATACGGGAGAGTTGAAAGGATCGACATGAAATCTGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAA

Protein sequence

MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRR

Homology

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BLAST of Cla021132 vs. Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-96
Identity = 182/244 (74.59%), Postives = 199/244 (81.56%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFEDERDAEDAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGD-PFDESPRR 180
            NVRIRRNF+FVQFETQEDATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 181 A---GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP--YERRRSPDYGRNRS 239
           +    Y R     Y R PSP   RRPSPDYGRARSP YDRY GP  YERRRSPDYGR RS
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RS 240

[Close]

BLAST of Cla021132 vs. Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 6.8e-93
Identity = 176/243 (72.43%), Postives = 198/243 (81.48%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MR ++VGNF YDTR S+LERLF+K+GRV+R+DMKSG+AFVYFEDERDAEDAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GYDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 120
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 121 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 180
           GKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK+LD+VVSVEYALR+ GER D +  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 181 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNG--PYERRRSPDYGRNRSP 239
           R            RRSPSPV+RRRPSPDY R RSP YDRY G  PYERR+SPDYGR RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 229

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BLAST of Cla021132 vs. Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 1.3e-72
Identity = 146/249 (58.63%), Postives = 175/249 (70.28%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GYDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIRTRVRDIERHFEP 120
           G   RRL VEW + ERG   R   GS+ S ++ RP+KTLFVINFD   TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDES 180
           YGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ SK++D+V+SVEYA++DD  RG+    S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGN--GHS 180

Query: 181 PRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSP--AYDRYNGPYERRRSPDYGRNRS 240
           P R     P     RRSPSP  R R SPDYGR  SP  AY +       R SPDYGR RS
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAYRK------ERTSPDYGRRRS 239

Query: 241 PEYGGRFRR 244
           P    + RR
Sbjct: 241 PSPYKKSRR 239

HSP 2 Score: 45.8 bits (107), Expect = 7.7e-04
Identity = 76/265 (28.68%), Postives = 104/265 (39.25%), Query Frame = 1


Query: 1   MRP---IFVGNFGYD-TRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLD 60
           MRP   +FV NF  D TR  +LE+ F  YG++  + ++  FAF+ +E + DA  A+   +
Sbjct: 93  MRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152

Query: 61  NLPFGYDRRRLSVEW------ARG-----ERGRHRDGSKSMANQRPTKTLFVINFDPIRT 120
           N       + +SVE+      ARG     ER R R   +   +  P K            
Sbjct: 153 NSKL--MDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKR----------- 212

Query: 121 RVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRD 180
                ER    YG+  +       A+ +  T  D  +    +   K   R  S EY  RD
Sbjct: 213 -----ERGSPDYGRGASPVA----AYRKERTSPDYGRRRSPSPYKK--SRRGSPEYG-RD 272

Query: 181 DGERGDPFDESPRR-------AGYGR-PGDSPYRRSP--SPVFRRRPSPDYGRARSPAYD 240
              RG   ++SPRR         Y R P +   R SP  SP  +  P    G   SP   
Sbjct: 273 --RRG---NDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIER 323

[Close]

BLAST of Cla021132 vs. Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 273.1 bits (697), Expect = 3.0e-72
Identity = 139/236 (58.90%), Postives = 167/236 (70.76%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GYDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESP 180
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 RRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNR 234
           RR    R  D   RRSPSP  R R SPDYGR  SP   +       R SPDYGR R
Sbjct: 181 RR---DRSPDR-RRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGR 227

HSP 2 Score: 256.5 bits (654), Expect = 2.9e-67
Identity = 147/277 (53.07%), Postives = 175/277 (63.18%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY EDERDAEDAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GYDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD   TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPF---- 180
           GK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK++D+V+SVEYA++DD  RG+ +    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 --DESPRRA--------------GYGRPGDSPY--------------RRSPSPVFRRRPS 239
             D SP R                YGR G SP               RRSPSP  R R S
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGR-GASPVAHKRERTSPDYGRGRRSPSPYKRARLS 240

[Close]

BLAST of Cla021132 vs. Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-18
Identity = 81/258 (31.40%), Postives = 110/258 (42.64%), Query Frame = 1


Query: 4   IFVGNFGYDTRQSELERLFAKYGRVERIDMKSG----FAFVYFEDERDAEDAIRGLDNLP 63
           ++VGN   D R+ E+E +F KYGR++ +D+KSG    FAFV FED RDAEDA+R  D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG-- 70

Query: 64  FGYDRRRLSVEWARG------------ERGRH--------RDGSKSMANQRPTKTLFVIN 123
           + +D RR+ VE+ RG            + G H        R G +    QR T    ++ 
Sbjct: 71  YEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 124 FDPIRTRVRDIERHFEPYGKVLNVRIRRN-FAFVQFETQEDATKALECTHMSKILDRVVS 183
             P     +D++ H    G V    + R+    V+F   ED   A+     +K       
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 190

Query: 184 VEY-ALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRY 236
             Y  +R+D   G          G    G     RS SP   RR SP Y   RS +  R 
Sbjct: 191 TAYIRVREDNSSG----------GGSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSR- 250

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BLAST of Cla021132 vs. TrEMBL
Match: A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 2.4e-137
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RFR 243
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of Cla021132 vs. TrEMBL
Match: W9S2E8_9ROSA (Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-114
Identity = 206/244 (84.43%), Postives = 224/244 (91.80%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRPIFVGNFGYDTRQSELERLF+KYG VER+DMKSGFAFVYF+D+RDAEDAIRGLD+ PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGPVERVDMKSGFAFVYFDDDRDAEDAIRGLDSRPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWA+GERGRHRDGS+   NQRPTKTLFVINFDP+ TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRP--NQRPTKTLFVINFDPLHTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQFETQEDATKALECTHMSKI+DRVVSVEYAL+DD ERGD + +SPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKIIDRVVSVEYALKDDDERGDRYYDSPRRG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP-YERRRSPDYGRNRSPEYGG 240
           GYGR   SPYRRSPSP +RRRPSPDYGR RSP YDRY+GP Y+RR+SP YGRN SPEY G
Sbjct: 181 GYGR--HSPYRRSPSPAYRRRPSPDYGRPRSPVYDRYDGPAYDRRKSPGYGRNISPEY-G 239

Query: 241 RFRR 244
           R+RR
Sbjct: 241 RYRR 239

[Close]

BLAST of Cla021132 vs. TrEMBL
Match: A0A061E050_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_005096 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.1e-113
Identity = 201/244 (82.38%), Postives = 220/244 (90.16%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF Y+TRQSELERLF+KYGR+ER+DMKSGFAFVYFEDERDAEDAIRGLDN+PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDERDAEDAIRGLDNIPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWA+GERGRHRDGS+S  NQRPTKTLFVINFDPIRTR RDI RHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRSTTNQRPTKTLFVINFDPIRTRERDILRHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQF TQEDATKALE T  SK+LDRVVSVEYALRDD ER D ++   R  
Sbjct: 121 LHVRIRRNFAFVQFATQEDATKALEATQRSKLLDRVVSVEYALRDDDERDDRYESPRRGG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP-YERRRSPDYGRNRSPEYG- 240
           GY R GDSPY RSPSP +RRRPSPDYGRARSP YDRYNGP Y+RR+SP+YGR+RSPE+G 
Sbjct: 181 GYRRRGDSPYGRSPSPAYRRRPSPDYGRARSPVYDRYNGPAYDRRKSPEYGRHRSPEHGS 240

Query: 241 GRFR 243
           GR+R
Sbjct: 241 GRYR 244

[Close]

BLAST of Cla021132 vs. TrEMBL
Match: A0A061DUB0_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=TCM_005096 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.1e-113
Identity = 201/244 (82.38%), Postives = 220/244 (90.16%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF Y+TRQSELERLF+KYGR+ER+DMKSGFAFVYFEDERDAEDAIRGLDN+PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDERDAEDAIRGLDNIPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWA+GERGRHRDGS+S  NQRPTKTLFVINFDPIRTR RDI RHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRSTTNQRPTKTLFVINFDPIRTRERDILRHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQF TQEDATKALE T  SK+LDRVVSVEYALRDD ER D ++   R  
Sbjct: 121 LHVRIRRNFAFVQFATQEDATKALEATQRSKLLDRVVSVEYALRDDDERDDRYESPRRGG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP-YERRRSPDYGRNRSPEYG- 240
           GY R GDSPY RSPSP +RRRPSPDYGRARSP YDRYNGP Y+RR+SP+YGR+RSPE+G 
Sbjct: 181 GYRRRGDSPYGRSPSPAYRRRPSPDYGRARSPVYDRYNGPAYDRRKSPEYGRHRSPEHGS 240

Query: 241 GRFR 243
           GR+R
Sbjct: 241 GRYR 244

[Close]

BLAST of Cla021132 vs. TrEMBL
Match: A0A061DSF2_THECC (RNA-binding (RRM/RBD/RNP motifs) family protein isoform 3 OS=Theobroma cacao GN=TCM_005096 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.1e-113
Identity = 201/244 (82.38%), Postives = 220/244 (90.16%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF Y+TRQSELERLF+KYGR+ER+DMKSGFAFVYFEDERDAEDAIRGLDN+PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDERDAEDAIRGLDNIPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWA+GERGRHRDGS+S  NQRPTKTLFVINFDPIRTR RDI RHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRSTTNQRPTKTLFVINFDPIRTRERDILRHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQF TQEDATKALE T  SK+LDRVVSVEYALRDD ER D ++   R  
Sbjct: 121 LHVRIRRNFAFVQFATQEDATKALEATQRSKLLDRVVSVEYALRDDDERDDRYESPRRGG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP-YERRRSPDYGRNRSPEYG- 240
           GY R GDSPY RSPSP +RRRPSPDYGRARSP YDRYNGP Y+RR+SP+YGR+RSPE+G 
Sbjct: 181 GYRRRGDSPYGRSPSPAYRRRPSPDYGRARSPVYDRYNGPAYDRRKSPEYGRHRSPEHGS 240

Query: 241 GRFR 243
           GR+R
Sbjct: 241 GRYR 244

[Close]

BLAST of Cla021132 vs. NCBI nr
Match: gi|449432024|ref|XP_004133800.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 3.4e-137
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240
            GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSPEYGG
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RFR 243
           RFR
Sbjct: 241 RFR 243

[Close]

BLAST of Cla021132 vs. NCBI nr
Match: gi|1009142455|ref|XP_015888731.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 438.0 bits (1125), Expect = 1.1e-119
Identity = 214/243 (88.07%), Postives = 227/243 (93.42%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF YDTRQSELERLF+KYGRVER+DMKSGFAFVYFEDERDAEDAIRGLDN PF
Sbjct: 1   MRPVFVGNFEYDTRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNRPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWARGERGRHRD S+  ANQRPTKTLFVINFDP+RTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDDSRLSANQRPTKTLFVINFDPLRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYAL+DDGERGD +D SPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALKDDGERGDRYD-SPRRG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNG-PYERRRSPDYGRNRSPEYGG 240
            YGR GDSPY RSPSP++RRRPSPDYGR RSPAYDRYNG  Y++RRSPDYGRN SPEY G
Sbjct: 181 SYGRRGDSPYGRSPSPLYRRRPSPDYGRPRSPAYDRYNGSSYDKRRSPDYGRNLSPEY-G 240

Query: 241 RFR 243
           R+R
Sbjct: 241 RYR 241

[Close]

BLAST of Cla021132 vs. NCBI nr
Match: gi|645254569|ref|XP_008233099.1| (PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume])

HSP 1 Score: 429.1 bits (1102), Expect = 5.2e-117
Identity = 205/243 (84.36%), Postives = 226/243 (93.00%), Query Frame = 1


Query: 1   MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60
           MRP+FVGNF Y+TRQSELERLF+K+GRV+R+DMKSGFAFVYFEDERDAEDAI+ LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKHGRVDRVDMKSGFAFVYFEDERDAEDAIQNLDNKPF 60

Query: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120
           GYDRRRLSVEWA+GERGRH DGSKS+ANQRPTKTLFVINFDP+RT+VRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHHDGSKSVANQRPTKTLFVINFDPLRTKVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180
           L+VRIRRNFAFVQF+TQE+ATKALE TH SKILDRVVSVEYALRDDGERGD + +SP+R 
Sbjct: 121 LHVRIRRNFAFVQFDTQEEATKALEATHASKILDRVVSVEYALRDDGERGDRYHDSPKRG 180

Query: 181 GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGP-YERRRSPDYGRNRSPEYGG 240
            YGR GDSP+ RSPSPV+RRRPSPDYGR RSPAYDRYNGP Y+R RSPDYGRN SPEY G
Sbjct: 181 SYGRRGDSPFGRSPSPVYRRRPSPDYGRPRSPAYDRYNGPVYDRHRSPDYGRNESPEY-G 240

Query: 241 RFR 243
           R+R
Sbjct: 241 RYR 242

[Close]

BLAST of Cla021132 vs. NCBI nr
Match: gi|778676805|ref|XP_011650664.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 1.1e-116
Identity = 206/209 (98.56%), Postives = 207/209 (99.04%), Query Frame = 1


Query: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 19  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 78

Query: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 79  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 138

Query: 155 RVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPA 214
           RVVSVEYALRDDGERGDPFDESPRRA GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPA
Sbjct: 139 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 198

Query: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFR 243
           YDRYNGPYERRRSPDYGRNRSPEYGGRFR
Sbjct: 199 YDRYNGPYERRRSPDYGRNRSPEYGGRFR 227

[Close]

BLAST of Cla021132 vs. NCBI nr
Match: gi|778676805|ref|XP_011650664.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus])

HSP 1 Score: 41.2 bits (95), Expect = 3.0e+00
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1


Query: 2   RPIFVGNFG-YDTRQSELERLFAKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 61
           + +FV NF    TR  ++ER F  YG+V  + ++  FAFV FE + DA  A+    ++  
Sbjct: 77  KTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALE-CTHMSK 136

Query: 62  GYDRRRLSVEWA---RGERGRHRDGSKSMA 88
             D R +SVE+A    GERG   D S   A
Sbjct: 137 ILD-RVVSVEYALRDDGERGDPFDESPRRA 164

HSP 2 Score: 427.9 bits (1099), Expect = 1.1e-116
Identity = 206/209 (98.56%), Postives = 207/209 (99.04%), Query Frame = 1


Query: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75

Query: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135

Query: 155 RVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPA 214
           RVVSVEYALRDDGERGDPFDESPRRA GYGRPGDSPYRRSPSPVFRRRPSPDYGRA SPA
Sbjct: 136 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPA 195

Query: 215 YDRYNGPYERRRSPDYGRNRSPEYGGRFR 243
           YDRYNGPYERRRSPDYGRNRSPEYGGRFR
Sbjct: 196 YDRYNGPYERRRSPDYGRNRSPEYGGRFR 224

The following BLAST results are available for this feature:

BLAST of Cla021132 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS31_ARATH	1.0e-96	74.59	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 S...	[more]
RS31A_ARATH	6.8e-93	72.43	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2...	[more]
RS40_ARATH	1.3e-72	58.63	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 S...	[more]
SRS41_ARATH	3.0e-72	58.90	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 S...	[more]
RSP3_CAEEL	2.5e-18	31.40	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rs...	[more]

BLAST of Cla021132 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8H4_CUCSA	2.4e-137	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1	[more]
W9S2E8_9ROSA	1.3e-114	84.43	Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=...	[more]
A0A061E050_THECC	3.1e-113	82.38	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_005096 PE=4 SV=1	[more]
A0A061DUB0_THECC	3.1e-113	82.38	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2 OS=Theobroma cacao GN=...	[more]
A0A061DSF2_THECC	3.1e-113	82.38	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 3 OS=Theobroma cacao GN=...	[more]

BLAST of Cla021132 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432024\|ref\|XP_004133800.1\|	3.4e-137	98.77	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus...	[more]
gi\|1009142455\|ref\|XP_015888731.1\|	1.1e-119	88.07	PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus j...	[more]
gi\|645254569\|ref\|XP_008233099.1\|	5.2e-117	84.36	PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume]	[more]
gi\|778676805\|ref\|XP_011650664.1\|	1.1e-116	98.56	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus...	[more]
gi\|778676805\|ref\|XP_011650664.1\|	3.0e+00	37.78	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X2 [Cucumis sativus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0018149	peptide cross-linking
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU38732	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021132	Cla021132.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38732	WMU38732	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 95..157 score: 2.7E-12coord: 4..60 score: 2.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 94..160 score: 3.3E-17coord: 3..70 score: 7.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..74 score: 17.438coord: 93..164 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 75..170 score: 2.2E-20coord: 4..74 score: 2.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 2..167 score: 1.56
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 202..221 score: 1.0E-35coord: 4..169 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021132	Csa3G119350	Cucumber (Chinese Long) v2	cuwmB233
Cla021132	MELO3C006002	Melon (DHL92) v3.5.1	mewmB461
Cla021132	Cucsa.259460	Cucumber (Gy14) v1	cgywmB479
Cla021132	CmaCh06G009810	Cucurbita maxima (Rimu)	cmawmB803
Cla021132	CmaCh14G021260	Cucurbita maxima (Rimu)	cmawmB242
Cla021132	CmoCh14G021870	Cucurbita moschata (Rifu)	cmowmB231
Cla021132	CmoCh06G010240	Cucurbita moschata (Rifu)	cmowmB793
Cla021132	Lsi05G021500	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021132	Cp4.1LG03g15890	Cucurbita pepo (Zucchini)	cpewmB613
Cla021132	Cp4.1LG08g00850	Cucurbita pepo (Zucchini)	cpewmB845
Cla021132	CsGy5G000050	Cucumber (Gy14) v2	cgybwmB373
Cla021132	MELO3C006002.2	Melon (DHL92) v3.6.1	medwmB447
Cla021132	Carg25710	Silver-seed gourd	carwmB0122
Cla021132	Carg20910	Silver-seed gourd	carwmB0992
Cla021132	Bhi01G000378	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021132	Cucumber (Gy14) v2	cgybwmB217
Cla021132	Melon (DHL92) v3.6.1	medwmB018
Cla021132	Cucumber (Chinese Long) v3	cucwmB239
Cla021132	Cucumber (Chinese Long) v3	cucwmB423
Cla021132	Watermelon (97103) v2	wmwmbB187
Cla021132	Watermelon (97103) v2	wmwmbB206
Cla021132	Wax gourd	wgowmB071
Cla021132	Watermelon (97103) v1	wmwmB119
Cla021132	Cucumber (Gy14) v1	cgywmB398
Cla021132	Cucurbita maxima (Rimu)	cmawmB799
Cla021132	Melon (DHL92) v3.5.1	mewmB022
Cla021132	Watermelon (Charleston Gray)	wcgwmB130
Cla021132	Watermelon (Charleston Gray)	wcgwmB286
Cla021132	Cucumber (Chinese Long) v2	cuwmB397
Cla021132	Cucurbita pepo (Zucchini)	cpewmB704
Cla021132	Bottle gourd (USVL1VR-Ls)	lsiwmB018