Cp4.1LG03g15890 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g15890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Arginine/serine-rich splicing factor, putative
Location	Cp4.1LG03 : 13514699 .. 13522237 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGGCCGCTGCATTTACAAGGTAATTGGTATGCTATATGGTGCGGAAGTGTTATGAACCAATTGAAGCAGATTCATGCCTACAGCCTCAGAAACGGCGTAGATTATACCAAATTCCTCATCGAAAAACTCCTGCAGATCCCAAATCTACCGTATGCTTGCACCCTCTTCGACCTTATTCCTAAACCTTCTGTTTTTCTTTACAACAAGTTTATTCAAACATTTTCTTCCATTGGTCACCACCACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGGTTGCTCTCCCAATCACCATTCATTCACCTTTCTCTTTCCCGCATGCGCTTCCTTTTTAAATGCTTACCCTGGTCAGATGCTTCATTCCCATTTCTGTAAGTCCGGATTTGCCTCCGATGTATTTGCTTTGACGGCGTTGTTGGACATGTATGGGAAATTGGGGATTTTGAAGTCTGCACGCCAACTGTTTGATGAAAAGCCTGTTCGAGATATACCCACTTGGAATTCGATGATTGCAGGTTATGCGAGGTCCGGGTACATGGGGGCAGCATTGGACTTGTTCGACAAAATGCCTACGAGAAATGTGATCTCTTGGACAGCCTTGATATCTGGATATGCGCAGAATGGAAAGTATGCGAAGGCCTTGGAGATGTTTCTGAGGTTGGAAAACGAGAAAGGCACTAAACCGAATGAGGTGACCATAGCCAGTGTTCTTCCTGCCTGTGCCCATCTTGGGGCGTTGGATATTGGGAAGAGGATTGAAGCCTACGCTCGGAAGAATGGGTTTTTCAAAAACTTGTATGTGAGCAATGCGATACTGGAAGTGCATGCTAGGTGCGGTAACATTGAGGAAGCTAGGCGAGTTTTTGATGAGATTGGAAGCAAAAGAAATTTGTGCTCATGGAATACCATGATAATGGGATTGGCTGTTCATGGAAGATGCTGTGATGCTCTTCAGCTTTATGATCAAATGTTGGTGAGCCTTCTGTATCCTTCTTCCTCTGTTTGGTTTGGATTTTAGTTTCTAAATCACCAATAAATTCAGATATTTAAGTGGGTAGAGTATGTTATACTTCATCTTTTATGTGTGTTCTTGACATGTTCTCATTTGTATGCTTGACATAATCTCCTACTTTGATGCATGTAAACTACTGCTAGATCTAAAACGTTGAAGCTGATGCGTTATGGCATTGTTCTTAAAAGCTAATTGTATTGTCGTAACAGATGCAAAGAACAAGACCCGATGACGTGACATTTGTAGGGCTGCTCTTGGCTTGCACTCACGGGGGCATGGTTGCGAAAGGTCGACAACTCTTTGAATCAATGGAGAGAAAGTTTCAAATTGCTCCCAAATTAGAGCACTATGGGTGCTTGGTCGACCTATTGGGCAGGGCGGGAGAGATAGAAGAAGCTTACAGCCTCATTCAGAGCATGCCAATGCTTCCTGATTCTGTTATATGGGGAGCTCTTCTGGGAGCTTGCAGCTTCCACGGCAATGTTGAACTGGGTGAAGTAGCAGCTGAGTCCTTATTCAAGCTGGAGCCATGGAACCCTGGAAACTACGTCATTCTCTCAAACATTTACGCATCGGCCGGGGATTGGTCCGGAGTTGCGAGGGTGAGGAAGATGATGAAGGGAGGGCATATCAGGAAGAGAGCAGGATGTAGTTATATTGAAGTGGGAGATGGGATTCATGAGTTCATTGTGGAAGATAGATCACATCCGAAGAGTGATGAAATATATGCTTTACTTCATGCCGTTTATGCCATTATTAAACTTCATAACCAAAACGAAGGTGAAGAAGAACTACTGTATTCTTCATACATATGAGTGTATTTATTATTATTAGCAGCAGTTTGGTTTCTAATGTTTGAAAAGTCTCCTTGAGTTTCAGTTCGGCGTCTAACAAGTTTTTGAATTTTTTTTTTAATTAAATTCTTAAAATTTTAATTTTATATTTATTAAGTTTGAAATTTCAATTTTGTTACATTTCTAATAAAAAGGAATGTGTTAATTTAAAAAGTTATGAAAGTATATTAATTTATTGTTTTCATTTAGTTCCAAAAAAAAAATATATATATACTTTTATANAGCTTTTTTTTTTTTTTGGGGGGGGGGGGAGAAAATCATTCGGCTTCATTGAAGGAAGGTCTTTTAATAAAAAAAAAAGTCAGCTAATCGGACGGTCGGAAATGTACAACATCAATGCTAGGGCTCGCTTTCGCTATTTAAAATGAACAGAATTGGATCATCAAGGCTCGTAAGAAACGACTCGGGCTTTCTCTTCCTCTCTCCTAGGGTTTTTCTCTTCCGTTCGAATCCGAGAATCCACAAGGTTTGTTATCTTTAATCCTTTGATGGTTGATCGTTTTGTTTCTGGTTAAACCCTGAAAGTTAGTTCTTCTTTTACGATTGTTTTGTTTCCTCTAATCCCATTTATCTTTTGTGGTTTGATTGGAAAGGAAATAGCTCATTTCAAGTTCATGAAGTTGCTTATCAATTTTTTTTTTTTTTTGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGATGGAGCTGTAATCTTTTTCCACTTATCATTTGCTAATATTGTAGCTTATTGGCTTCGTTTTGTTTCGGTTGAATATTTCCTACGGCGCGATTAACAGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTCGGGTATGACACCAGGCAATCTGAACTGGAGCGGTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAGTCTGGTATATTGCAATTTCTCTGTACTAGTTTGCATGCCATTTTTAACGAAGTTATTATAAATTTGGTCATAACTCGTGTAGATTTTATTGTATGAAGGATCCATTTTTGTGGTCAGCTTCAAACGATTGCTTATGTTGAATATTGCTCCTCAATTCTTTTTGTATTACTATTGGTGGAATGAGTGGGTTGCGATGCTTGCTTATTTAGTATTATTTTTTGGACCTGTATATTTCGTCACCTAGTTTTGACATGCAAGGTAAAAGATGTATTGATATGATCGTGTACAGTTTGGTTAGGTACATGCGCAATGGATGGTGCTTTTGGATTATGTGTGCATGCTTTAACATAAATTCTTCACTGTTCCCAATTTGCCATGAGTTTGGTAGGCTCACAAGTGTCTGTATGCATGTATTGATGGATGACTCTTTGGTGTAGATTTTACTTAGTATTGTCAAGTAGAATTCCTACTTTTCAGCTTCCTAGTTGGATAATTTTTTTTTTTGTTACTCGTGGACTTTTGTACTTCAATTTCATCATTCGAATCATCTTTCAGCTTCCTAGTTTGAATTGACGTTTTTCATCTGGAAAAGTTCCTTGGCCCTCACCCACCTTGCCTGACATCCTTAATCCTACAAAATTTTAATGATTTATAGATTTTGGGTATACTGGTTTATTGAATTATGGTATTTTAGTGCGAGGCCGCCCTACTGATAATAATACTAGGTATGAAAGTAATGTAATGTTTTTATCAATAATACTAAAATTGATGTTTTTTAAATTATAAAACCAGTTTGTGAGATGGATCCATAGCTATTATGCTATGATAATATCCAATGGTCCATTTTTTTTTTTTATGAAAACTTGATGGCAGGCACAAATTTACTATTTTTATGGGGGAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTTCTAAGGAAAATGAGCCAAGCTCCTATCTGGGCTCACCACCATCTGTGCATAAAATTTATTTTGGAAGGAAACTTCCTGCTTGCCTGCTTAGCTTCACCTACAGATAGCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCATCACTTAAGTTGCAATACAACAGAATCGTCTTAATGGATTGATCTTTATCTCATGCCTCATCAATTAAGTTGCAATTCACCAGAATCGTGTTAATGGATTGACTATATCTCTTGCCTTTGCCTACCTATCACCACTGATCATAGGACTTCACTGAATTCTGGTCATGCCTTCCATATGATATTAGTGGCTGAATGAAATCTGTCATGCCATGCCTTCCATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGCATAGTTGAAATTTTGGATTTAAACCTTTAGTATGCAACCATCTTAGTTCATCATGCAACGTCTCTACAGCTATATGTGCATCAGTCCTCCCATATTTGCAGGTGTTGTATTTTTAATAGTTTATCCCAGGGAAAGAAACGATGAGGCTGGGTGACAATACCTGCTAAATGGATAAGGCTTCAACATCTTACCATGTTTTATACATCTAATTGTTTGTATTTTTCAGGTTTTGCCTTCGTTTACTTTGAAGAAGAGAGAGATGCTGAAGATTCTATTCGTAGCCTTGACAACATGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTAGTCCTCTCTCCTCCCTCGGTCCCTTCTTTTTGGGTTTATGCATTTTAGAAGCTGGTTTATTCATTTTCTCAAGATATTCATATCTGCCAGCAATAGGTGATTTTAACATTAGCTTTTGGTTTGGTTGGGTTAGGGCGAACGAGGTCGCAGTCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCGATTCGTACTAGAGTTCATGATATTGAAAGACACTTTGAACCTTATGGAAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAGGCCCTTGAGTGTACCCACATGAGGTAAGCTGAGTTTTGAGTCTCCTGCATGCATGCTTGCTCTTTTTATTTGGTGTATTTATTTTCTTTACTCTCTAAACGGCGTAAAATATTTTGTTGTTCTTTGTAATTTTGCAGCAAAATATTAGACAGGGTTGTATCAGTGGAGTATGCTTTGAGGGATGACGGTGAGAGGGGTGACCATTATGACGATAGCCCTCGAAGAGCAGCTTATGGGCGGCTTGGGGATAGTCCTTATCGGAGGTCACCTAGTCCTGTGTATCACCGTCGACCAAGTCCTGACTACGGACGAGCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTTATGAACGACGTAGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGAATTAGGCAGGAATCGAAGCCCTGAATATGGTAGTGTTCGCAGGTAATCTTTATTCTTTGATATTTGGCACAGCCAGCCTCTATTTTGAGTTACCATAGCCTTGTAATTCTAGCTAAGCACTCCTTTTCTCATGCCTTTGTTGACAGTCGTTCACCCATTCGGAGGTCAAGAACCTAAAGGAAATTGGACCCGACCCATTTGGAGGTCATGAACCCGATGGAAATCTAATTTATAATTTTCCGTAGTTACATTCATAGGTTTAGGTCTGGGGTGTTAAGGGATAGTGAGGAGTTTCTGTACAACCCTCGTGTTGAGTATTCGAACTAATGTTGGTAGATTTGGTATAATGAAGAAACCGTGGTTTTGATATATTTTTTGAAGCCTGTCGTCTTTGTCTTAACAATTGTGTACTTGGGAACTATCCAGCATGCTTGAGGTAAGTAAAAACGTTGGAACAGGTTGATATAACAAAATGGCAGATTACGGCAATCTTGTGTAATTCTCCGGATTTAATGTTACATGAGATGAGAGGTTAGGTGCATTAGGACATCGTCTTGTTTTTGAGGTCAATTAAAGCCATATGTAGGGATCTGATACCCTACTCGTTGGCCAAATTTAGTTCCATGGATAATGGTCAAGTTTTGATTGTCTAATGGGTCTCGTAAGATTGTATATCCAGATTGTGAGATAGTCGCCGTCTACAATTTGGTAGTGAAGCTGCTTGAAATCGGCGAAGTTTATGGTATGTGATAGGGGGTGGTGACTAAATGGAGAAGGTTGAAAATGGAAGTTAGTAGAGAATTCAAGGCTTGAATGATTATTTCATAAAGAAAGAAGGTAACAGGAATTGAGGAATTATGTTACAGAGAAAGGAGAAAGAGTTATGGGAAATGAAATGAAATGAAATGAAATGAAATGAAATGAAATGAAATGAAATTAGCAACATTCGTTGGTGATCTTGAACTTCTCCAAAACCACTTTGCCTTCTTTGTACCTCTGAGTTTCATCATAAGCCTTAATGTATTTCCATCCCAACATTTGGCCACACTCCGAACAAAACAAATCAGAAACTATGTATGTTCCGCTGAGTAACATCTTCTCCTGTTGAGGCCCCTCTTCCACATTCCTTGCTTCGTAGAACAAGAACGCTCTTCCCCGCAGCGACTGCACCAACACAGCAAATTATTCCTATAAATAACAAAATCAAAACCCAAACTTCTTTGTTGTTACCTGAAACCCTTTCGAAATAATGTCATCATGTCGTGATACTTCATTACTGCAATTCTGGCAACTGTACAGCCGCGCCCCGATCATCAAGTCCGCCATTATTGATGATGATGATGATGATAATGATCCTCTTCTGCACCTTCGAAACCAATCACTCGGAAAGGTATGTAAAGTTGTTCCTTTTAAAGGATGAATTTGCCAAATGCTGGCGATCATTCAGGGATTTTCTTAACAATAACAATATTTTCCTTTTTTTTTTTCTTTTTTTTTTTTTTTATTTTAATAAAAGATAATGACGCATATTCATTATATGTTACTTAATTTTATAGAACTCGTGTTCATAA

mRNA sequence

ATCCGGCCGCTGCATTTACAAGGTAATTGGTATGCTATATGGTGCGGAAGTGTTATGAACCAATTGAAGCAGATTCATGCCTACAGCCTCAGAAACGGCGTAGATTATACCAAATTCCTCATCGAAAAACTCCTGCAGATCCCAAATCTACCGTATGCTTGCACCCTCTTCGACCTTATTCCTAAACCTTCTGTTTTTCTTTACAACAAGTTTATTCAAACATTTTCTTCCATTGGTCACCACCACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGCCTTGATATCTGGATATGCGCAGAATGGAAAGTATGCGAAGGCCTTGGAGATGTTTCTGAGGTTGGAAAACGAGAAAGGCACTAAACCGAATGAGGTGACCATAGCCAGTGTTCTTCCTGCCTGTGCCCATCTTGGGGCGTTGGATATTGGGAAGAGGATTGAAGCCTACGCTCGGAAGAATGGGTTTTTCAAAAACTTGTATGTGAGCAATGCGATACTGGAAGTGCATGCTAGGTGCGGTAACATTGAGGAAGCTAGGCGAGTTTTTGATGAGATTGGAAGCAAAAGAAATTTGTGCTCATGGAATACCATGATAATGGGATTGGCTGTTCATGGAAGATGCTGTGATGCTCTTCAGCTTTATGATCAAATGTTGGGTTTTTCTCTTCCGTTCGAATCCGAGAATCCACAAGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTCGGGTATGACACCAGGCAATCTGAACTGGAGCGGTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAGTCTGGTTTTGCCTTCGTTTACTTTGAAGAAGAGAGAGATGCTGAAGATTCTATTCGTAGCCTTGACAACATGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGCGAACGAGGTCGCAGTCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCGATTCGTACTAGAGTTCATGATATTGAAAGACACTTTGAACCTTATGGAAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAGGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTATCAGTGGAGTATGCTTTGAGGGATGACGGTGAGAGGGGTGACCATTATGACGATAGCCCTCGAAGAGCAGCTTATGGGCGGCTTGGGGATAGTCCTTATCGGAGGTCACCTAGTCCTGTGTATCACCGTCGACCAAGTCCTGACTACGGACGAGCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTTATGAACGACGTAGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGAATTAGGCAGGAATCGAAGCCCTGAATATGGTAGTGTTCGCAGCCGCGCCCCGATCATCAAGTCCGCCATTATTGATGATGATGATGATGATAATGATCCTCTTCTGCACCTTCGAAACCAATCACTCGGAAAGAACTCGTGTTCATAA

Coding sequence (CDS)

ATCCGGCCGCTGCATTTACAAGGTAATTGGTATGCTATATGGTGCGGAAGTGTTATGAACCAATTGAAGCAGATTCATGCCTACAGCCTCAGAAACGGCGTAGATTATACCAAATTCCTCATCGAAAAACTCCTGCAGATCCCAAATCTACCGTATGCTTGCACCCTCTTCGACCTTATTCCTAAACCTTCTGTTTTTCTTTACAACAAGTTTATTCAAACATTTTCTTCCATTGGTCACCACCACCGATGCTGGTTGCTTTACTATCAAATGTGCCTCCAAGCCTTGATATCTGGATATGCGCAGAATGGAAAGTATGCGAAGGCCTTGGAGATGTTTCTGAGGTTGGAAAACGAGAAAGGCACTAAACCGAATGAGGTGACCATAGCCAGTGTTCTTCCTGCCTGTGCCCATCTTGGGGCGTTGGATATTGGGAAGAGGATTGAAGCCTACGCTCGGAAGAATGGGTTTTTCAAAAACTTGTATGTGAGCAATGCGATACTGGAAGTGCATGCTAGGTGCGGTAACATTGAGGAAGCTAGGCGAGTTTTTGATGAGATTGGAAGCAAAAGAAATTTGTGCTCATGGAATACCATGATAATGGGATTGGCTGTTCATGGAAGATGCTGTGATGCTCTTCAGCTTTATGATCAAATGTTGGGTTTTTCTCTTCCGTTCGAATCCGAGAATCCACAAGTAGCAACGATGAGGCCGATATTTGTTGGGAACTTCGGGTATGACACCAGGCAATCTGAACTGGAGCGGTTATTCGCCAAATATGGGAGAGTTGAAAGGATCGACATGAAGTCTGGTTTTGCCTTCGTTTACTTTGAAGAAGAGAGAGATGCTGAAGATTCTATTCGTAGCCTTGACAACATGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGCGAACGAGGTCGCAGTCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCGATTCGTACTAGAGTTCATGATATTGAAAGACACTTTGAACCTTATGGAAAGGTGCTCAATGTTCGCATTAGAAGGAACTTTGCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAGGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTATCAGTGGAGTATGCTTTGAGGGATGACGGTGAGAGGGGTGACCATTATGACGATAGCCCTCGAAGAGCAGCTTATGGGCGGCTTGGGGATAGTCCTTATCGGAGGTCACCTAGTCCTGTGTATCACCGTCGACCAAGTCCTGACTACGGACGAGCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTTATGAACGACGTAGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGATTATGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAATTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGAATCGGAGCCCTGAAGTTGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGGAATAGGCAGGGATCGGAGCCCTGAATTAGGCAGGAATCGAAGCCCTGAATATGGTAGTGTTCGCAGCCGCGCCCCGATCATCAAGTCCGCCATTATTGATGATGATGATGATGATAATGATCCTCTTCTGCACCTTCGAAACCAATCACTCGGAAAGAACTCGTGTTCATAA

Protein sequence

IRPLHLQGNWYAIWCGSVMNQLKQIHAYSLRNGVDYTKFLIEKLLQIPNLPYACTLFDLIPKPSVFLYNKFIQTFSSIGHHHRCWLLYYQMCLQALISGYAQNGKYAKALEMFLRLENEKGTKPNEVTIASVLPACAHLGALDIGKRIEAYARKNGFFKNLYVSNAILEVHARCGNIEEARRVFDEIGSKRNLCSWNTMIMGLAVHGRCCDALQLYDQMLGFSLPFESENPQVATMRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPFGYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRNRSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPELGRNRSPEYGSVRSRAPIIKSAIIDDDDDDNDPLLHLRNQSLGKNSCS

Homology

[Close]

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-98
Identity = 189/256 (73.83%), Postives = 210/256 (82.03%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFE+ERDAED+IR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+ HDIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDD-SPRR 415
            NVRIRRNF+FVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 416 A---AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGP--YERRRSPDYGRNRS 475
           +    Y R     Y R PSP   RRPSPDYGRARSP YDRY GP  YERRRSPDYGR RS
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RS 240

Query: 476 PDYGRNRSPDYGRNRS 486
            DYGR RSP Y R RS
Sbjct: 241 SDYGRQRSPGYDRYRS 255

[Close]

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-92
Identity = 184/264 (69.70%), Postives = 210/264 (79.55%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MR ++VGNF YDTR S+LERLF+K+GRV+R+DMKSG+AFVYFE+ERDAED+IR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 296 GYDRRRLSVEWAR---GERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPY 355
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR  D+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 356 GKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSP 415
           GKVLNVR+RRNFAFVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 416 RRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNG--PYERRRSPDYGRNRSP 475
           R            RRSPSPVY RRPSPDY R RSP YDRY G  PYERR+SPDYGR RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 240

Query: 476 DYGRNRSPDYGRNRSPDYGRNRSP 495
           DYGR R+      RSP Y R+RSP
Sbjct: 241 DYGRARA------RSPGYDRSRSP 244

[Close]

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 268.5 bits (685), Expect = 2.2e-70
Identity = 173/353 (49.01%), Postives = 220/353 (62.32%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY E+ERDAED+IR+LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 296 GYDRRRLSVEWARGERG---RSRDGSK-SMANQRPTKTLFVINFDPIRTRVHDIERHFEP 355
           G   RRL VEW + ERG   RS  GS+ S ++ RP+KTLFVINFD   TR  D+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 356 YGKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDS 415
           YGK++NVRIRRNFAF+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +   
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 416 PRRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSP--AYDRYNGPYERRRSPDYGRNRS 475
            RR           RRSPSP    R SPDYGR  SP  AY +       R SPDYGR RS
Sbjct: 181 RRRDR----SPERRRRSPSPYKRERGSPDYGRGASPVAAYRK------ERTSPDYGRRRS 240

Query: 476 PD-YGRNR--SPDYGRN-RSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRS 535
           P  Y ++R  SP+YGR+ R  D  R R       +      N+   +  N SP       
Sbjct: 241 PSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPR 300

Query: 536 PGIGRDRSPGIGRDR---SPGIGRDRSPG-IGRDRSPGIGRDRSPGIGRDRSP 575
            G+G   SP   R+R   SP  G+  SPG IGR  S G        + + RSP
Sbjct: 301 NGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSP 343

[Close]

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-69
Identity = 176/348 (50.57%), Postives = 220/348 (63.22%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY E+ERDAED+IR+LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 296 GYDRRRLSVEWARGERG---RSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPY 355
           G   RRL VEW + +RG   RS    +S +  RP+KTLFVINFD   TR  D+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 356 GKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSP 415
           GK++NVRIRRNFAF+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 416 RRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGR-NRSPD 475
           RR           RRSPSP    R SPDYGR  SP   +       R SPDYGR  RSP 
Sbjct: 181 RRDR----SPDRRRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGRRSPS 240

Query: 476 -YGRNR-SPDYGRN-------RSPDYG--RNRSPEFGR--NRSP----EFGRNRSP---- 535
            Y R R SPDY R+        SP+ G  RNRSP  GR  +RSP    +   +RSP    
Sbjct: 241 PYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYE 300

Query: 536 EVGRNRSP---EVGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRD 556
           +   +RSP   E  R+RS    +  SP  G+  SPG   +   G G D
Sbjct: 301 KRRESRSPPPYEKRRERSRSRSKS-SPENGQVESPGQIMEVEAGRGYD 338

[Close]

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-43
Identity = 102/254 (40.16%), Postives = 151/254 (59.45%), Query Frame = 1


Query: 1   IRPLHLQGNWYAIWCGSVMNQ--LKQIHAYSLRNGVDYTKF----LIEKLLQIPNLPYAC 60
           +RP H   N+      S  +   L+ +H+   R+G +   F    LI    ++  L  A 
Sbjct: 78  LRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCAR 137

Query: 61  TLFDLIPKPSVFLYNKFIQTFSSIGHHHRCWLLYYQMCLQ------ALISGYAQNGKYAK 120
            +FD + K  V ++N  I  +   G       L+  M  +       +ISG++QNG Y++
Sbjct: 138 RVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSE 197

Query: 121 ALEMFLRLENEKGTKPNEVTIASVLPACAHLGALDIGKRIEAYARKNGFFKNLYVSNAIL 180
           AL+MFL +E +K  KPN +T+ SVLPACA+LG L+IG+R+E YAR+NGFF N+YV NA +
Sbjct: 198 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATI 257

Query: 181 EVHARCGNIEEARRVFDEIGSKRNLCSWNTMIMGLAVHGRCCDALQLYDQMLGFSLPFES 240
           E++++CG I+ A+R+F+E+G++RNLCSWN+MI  LA HG+  +AL L+ QML      E 
Sbjct: 258 EMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR-----EG 317

Query: 241 ENPQVATMRPIFVG 243
           E P   T    FVG
Sbjct: 318 EKPDAVT----FVG 322

[Close]

BLAST of Cp4.1LG03g15890 vs. TrEMBL
Match: A0A0L9T543_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan181s000800 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.1e-128
Identity = 238/314 (75.80%), Postives = 271/314 (86.31%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+YD SPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYD-SPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y R        SPSPVYHRRPSPDYGR RSP YDRYNG  +RRRSPDYGR+RSPDYGR+
Sbjct: 181 GYDR--------SPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRHRSPDYGRH 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRSPGIGRDRSPG 535
           RSPDYGR RSPDYGR RSP++G+ RSP++ + RSP+  + RSP+ G+ RSP  G+ RSP 
Sbjct: 241 RSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDYVKPRSPDFGKPRSPDFGKPRSPD 300

Query: 536 IGRDRSPGIGRDRS 550
            G+ RSP  GR RS
Sbjct: 301 FGKPRSPEYGRFRS 303

[Close]

BLAST of Cp4.1LG03g15890 vs. TrEMBL
Match: V7APP1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G116100g PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 6.6e-127
Identity = 242/330 (73.33%), Postives = 274/330 (83.03%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y         RSPSPVYHRRPSPDYGR RSP YDRYNG  +RR SPDYGR   PDYGR 
Sbjct: 181 GYD--------RSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGR-AIPDYGRR 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRSPGIGRDRSPG 535
           RSPDYG+ RSPDYG+ RSP++ + RSP +G+ RSP  G+ RSP  G+ RSPG G+ RSP 
Sbjct: 241 RSPDYGKPRSPDYGKPRSPDYVKPRSPGYGKPRSPGYGKPRSPSYGKPRSPGYGKPRSPD 300

Query: 536 IGRDRSPGIGRDRSPGIGRDRSPGIGRDRS 566
            G+ RSP  G+ RSP   + RSP  GR RS
Sbjct: 301 NGKPRSPDYGKTRSPDYAKPRSPEYGRYRS 318

[Close]

BLAST of Cp4.1LG03g15890 vs. TrEMBL
Match: A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.6e-123
Identity = 225/247 (91.09%), Postives = 235/247 (95.14%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFE+ERDAED+IR LDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           GYDRRRLSVEWARGERGR RDGSKSMANQRPTKTLFVINFDPIRTRV DIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           LNVRIRRNFAFVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 416 -AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYG- 475
             YGR GDSPYRRSPSPV+ RRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSP+YG 
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 476 --RNRSP 479
             R+RSP
Sbjct: 241 RFRSRSP 247

[Close]

BLAST of Cp4.1LG03g15890 vs. TrEMBL
Match: A0A0S3SZJ1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G175800 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.2e-121
Identity = 226/290 (77.93%), Postives = 254/290 (87.59%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y         RSPSPVYHRRPSPDYGR RSP YDRYNG  +RRRSPDYGR RSPDYG+ 
Sbjct: 181 GYD--------RSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRRRSPDYGKP 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRS 526
           RSPDY + RSPDY + RSP+FG+ RSP+FG+ RSP+ G+ RSPE GR RS
Sbjct: 241 RSPDYVKPRSPDYVKPRSPDFGKPRSPDFGKPRSPDFGKPRSPEYGRFRS 279

[Close]

BLAST of Cp4.1LG03g15890 vs. TrEMBL
Match: A0A0B2Q2U8_GLYSO (Arginine/serine-rich-splicing factor RSP31 OS=Glycine soja GN=glysoja_013127 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.6e-112
Identity = 218/283 (77.03%), Postives = 245/283 (86.57%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQ+PTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKA+ECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKAIECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYN-GPYERRRSPDYGRNRSPDYGR 475
                    Y RSPSP YHRRPSPDYGR RSP YDRYN G  +RRRSPDYGR+RSPDYGR
Sbjct: 181 G--------YERSPSP-YHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDYGRHRSPDYGR 240

Query: 476 NRSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRS 518
            RSPDYGR +SPDYG+ RSPE+GR RS      RSP V R+R+
Sbjct: 241 RRSPDYGRRKSPDYGKPRSPEYGRYRS------RSP-VRRSRT 264

[Close]

BLAST of Cp4.1LG03g15890 vs. TAIR10
Match: AT3G61860.1 (AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 361.3 bits (926), Expect = 1.4e-99
Identity = 189/256 (73.83%), Postives = 210/256 (82.03%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRP+FVGNF Y+TRQS+LERLF KYGRV+R+DMKSG+AFVYFE+ERDAED+IR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           GY++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPIRT+ HDIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDD-SPRR 415
            NVRIRRNF+FVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 416 A---AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGP--YERRRSPDYGRNRS 475
           +    Y R     Y R PSP   RRPSPDYGRARSP YDRY GP  YERRRSPDYGR RS
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGR-RS 240

Query: 476 PDYGRNRSPDYGRNRS 486
            DYGR RSP Y R RS
Sbjct: 241 SDYGRQRSPGYDRYRS 255

[Close]

BLAST of Cp4.1LG03g15890 vs. TAIR10
Match: AT2G46610.1 (AT2G46610.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 341.3 bits (874), Expect = 1.5e-93
Identity = 184/264 (69.70%), Postives = 210/264 (79.55%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MR ++VGNF YDTR S+LERLF+K+GRV+R+DMKSG+AFVYFE+ERDAED+IR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 296 GYDRRRLSVEWAR---GERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPY 355
           GY RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPIRTR  D+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 356 GKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSP 415
           GKVLNVR+RRNFAFVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 416 RRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNG--PYERRRSPDYGRNRSP 475
           R            RRSPSPVY RRPSPDY R RSP YDRY G  PYERR+SPDYGR RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 240

Query: 476 DYGRNRSPDYGRNRSPDYGRNRSP 495
           DYGR R+      RSP Y R+RSP
Sbjct: 241 DYGRARA------RSPGYDRSRSP 244

[Close]

BLAST of Cp4.1LG03g15890 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35)

HSP 1 Score: 268.5 bits (685), Expect = 1.2e-71
Identity = 173/353 (49.01%), Postives = 220/353 (62.32%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           M+P+F GNF YD R+ +LERLF KYG+VER+DMK+GFAFVY E+ERDAED+IR+LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 296 GYDRRRLSVEWARGERG---RSRDGSK-SMANQRPTKTLFVINFDPIRTRVHDIERHFEP 355
           G   RRL VEW + ERG   RS  GS+ S ++ RP+KTLFVINFD   TR  D+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 356 YGKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDS 415
           YGK++NVRIRRNFAF+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +   
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180

Query: 416 PRRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSP--AYDRYNGPYERRRSPDYGRNRS 475
            RR           RRSPSP    R SPDYGR  SP  AY +       R SPDYGR RS
Sbjct: 181 RRRDR----SPERRRRSPSPYKRERGSPDYGRGASPVAAYRK------ERTSPDYGRRRS 240

Query: 476 PD-YGRNR--SPDYGRN-RSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRS 535
           P  Y ++R  SP+YGR+ R  D  R R       +      N+   +  N SP       
Sbjct: 241 PSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPR 300

Query: 536 PGIGRDRSPGIGRDR---SPGIGRDRSPG-IGRDRSPGIGRDRSPGIGRDRSP 575
            G+G   SP   R+R   SP  G+  SPG IGR  S G        + + RSP
Sbjct: 301 NGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSP 343

[Close]

BLAST of Cp4.1LG03g15890 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 267.3 bits (682), Expect = 2.7e-71
Identity = 182/367 (49.59%), Postives = 228/367 (62.13%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           M+P+F GNF YD R+S+LERLF KYG+VER+DMK+GFAFVY E+ERDAED+IR+LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 296 GYDRRRLSVEWARGERG---RSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPY 355
           G   RRL VEW + +RG   RS    +S +  RP+KTLFVINFD   TR  D+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 356 GKVLNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSP 415
           GK++NVRIRRNFAF+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 416 RRAAYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGR-NRSPD 475
           RR           RRSPSP    R SPDYGR  SP   +       R SPDYGR  RSP 
Sbjct: 181 RRDR----SPDRRRRSPSPYRRERGSPDYGRGASPVAHK-----RERTSPDYGRGRRSPS 240

Query: 476 -YGRNR-SPDYGRN-------RSPDYG--RNRSPEFGR--NRSP----EFGRNRSP---- 535
            Y R R SPDY R+        SP+ G  RNRSP  GR  +RSP    +   +RSP    
Sbjct: 241 PYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYE 300

Query: 536 EVGRNRSP---EVGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPGIGRDRSPG 575
           +   +RSP   E  R+RS    +  SP  G+  SPG   +   G G D +    R+ SP 
Sbjct: 301 KRRESRSPPPYEKRRERSRSRSKS-SPENGQVESPGQIMEVEAGRGYDGADSPIRESSP- 353

[Close]

BLAST of Cp4.1LG03g15890 vs. TAIR10
Match: AT5G08510.1 (AT5G08510.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 179.9 bits (455), Expect = 5.7e-45
Identity = 102/254 (40.16%), Postives = 151/254 (59.45%), Query Frame = 1


Query: 1   IRPLHLQGNWYAIWCGSVMNQ--LKQIHAYSLRNGVDYTKF----LIEKLLQIPNLPYAC 60
           +RP H   N+      S  +   L+ +H+   R+G +   F    LI    ++  L  A 
Sbjct: 78  LRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCAR 137

Query: 61  TLFDLIPKPSVFLYNKFIQTFSSIGHHHRCWLLYYQMCLQ------ALISGYAQNGKYAK 120
            +FD + K  V ++N  I  +   G       L+  M  +       +ISG++QNG Y++
Sbjct: 138 RVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSE 197

Query: 121 ALEMFLRLENEKGTKPNEVTIASVLPACAHLGALDIGKRIEAYARKNGFFKNLYVSNAIL 180
           AL+MFL +E +K  KPN +T+ SVLPACA+LG L+IG+R+E YAR+NGFF N+YV NA +
Sbjct: 198 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATI 257

Query: 181 EVHARCGNIEEARRVFDEIGSKRNLCSWNTMIMGLAVHGRCCDALQLYDQMLGFSLPFES 240
           E++++CG I+ A+R+F+E+G++RNLCSWN+MI  LA HG+  +AL L+ QML      E 
Sbjct: 258 EMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLR-----EG 317

Query: 241 ENPQVATMRPIFVG 243
           E P   T    FVG
Sbjct: 318 EKPDAVT----FVG 322

[Close]

BLAST of Cp4.1LG03g15890 vs. NCBI nr
Match: gi|920678733|gb|KOM25730.1| (hypothetical protein LR48_Vigan181s000800 [Vigna angularis])

HSP 1 Score: 468.0 bits (1203), Expect = 3.0e-128
Identity = 238/314 (75.80%), Postives = 271/314 (86.31%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+YD SPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYD-SPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y R        SPSPVYHRRPSPDYGR RSP YDRYNG  +RRRSPDYGR+RSPDYGR+
Sbjct: 181 GYDR--------SPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRHRSPDYGRH 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRSPGIGRDRSPG 535
           RSPDYGR RSPDYGR RSP++G+ RSP++ + RSP+  + RSP+ G+ RSP  G+ RSP 
Sbjct: 241 RSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDYVKPRSPDFGKPRSPDFGKPRSPD 300

Query: 536 IGRDRSPGIGRDRS 550
            G+ RSP  GR RS
Sbjct: 301 FGKPRSPEYGRFRS 303

[Close]

BLAST of Cp4.1LG03g15890 vs. NCBI nr
Match: gi|593266206|ref|XP_007135281.1| (hypothetical protein PHAVU_010G116100g [Phaseolus vulgaris])

HSP 1 Score: 463.0 bits (1190), Expect = 9.5e-127
Identity = 242/330 (73.33%), Postives = 274/330 (83.03%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y         RSPSPVYHRRPSPDYGR RSP YDRYNG  +RR SPDYGR   PDYGR 
Sbjct: 181 GYD--------RSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRVSPDYGR-AIPDYGRR 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRSPGIGRDRSPG 535
           RSPDYG+ RSPDYG+ RSP++ + RSP +G+ RSP  G+ RSP  G+ RSPG G+ RSP 
Sbjct: 241 RSPDYGKPRSPDYGKPRSPDYVKPRSPGYGKPRSPGYGKPRSPSYGKPRSPGYGKPRSPD 300

Query: 536 IGRDRSPGIGRDRSPGIGRDRSPGIGRDRS 566
            G+ RSP  G+ RSP   + RSP  GR RS
Sbjct: 301 NGKPRSPDYGKTRSPDYAKPRSPEYGRYRS 318

[Close]

BLAST of Cp4.1LG03g15890 vs. NCBI nr
Match: gi|449432024|ref|XP_004133800.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 3.7e-123
Identity = 225/247 (91.09%), Postives = 235/247 (95.14%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIFVGNFGYDTRQSELERLF+KYGRVERIDMKSGFAFVYFE+ERDAED+IR LDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           GYDRRRLSVEWARGERGR RDGSKSMANQRPTKTLFVINFDPIRTRV DIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           LNVRIRRNFAFVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 416 -AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYG- 475
             YGR GDSPYRRSPSPV+ RRPSPDYGRA SPAYDRYNGPYERRRSPDYGRNRSP+YG 
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 476 --RNRSP 479
             R+RSP
Sbjct: 241 RFRSRSP 247

[Close]

BLAST of Cp4.1LG03g15890 vs. NCBI nr
Match: gi|951067109|ref|XP_014524133.1| (PREDICTED: serine/arginine-rich splicing factor RS31 [Vigna radiata var. radiata])

HSP 1 Score: 447.2 bits (1149), Expect = 5.4e-122
Identity = 227/290 (78.28%), Postives = 255/290 (87.93%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y         RSPSPVYHRRPSPDYGR RSP YDRYNG  +RRRSPDYGR+RSPDYGR 
Sbjct: 181 GYD--------RSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRHRSPDYGRR 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRS 526
           RSPDYGR RSPDYG+ RSP++ + RSP+F + RSP+ G+ RSPE GR RS
Sbjct: 241 RSPDYGRRRSPDYGKPRSPDYVKPRSPDFVKPRSPDFGKPRSPEYGRYRS 279

[Close]

BLAST of Cp4.1LG03g15890 vs. NCBI nr
Match: gi|965611992|dbj|BAT98131.1| (hypothetical protein VIGAN_09175800 [Vigna angularis var. angularis])

HSP 1 Score: 444.1 bits (1141), Expect = 4.6e-121
Identity = 226/290 (77.93%), Postives = 254/290 (87.59%), Query Frame = 1


Query: 236 MRPIFVGNFGYDTRQSELERLFAKYGRVERIDMKSGFAFVYFEEERDAEDSIRSLDNMPF 295
           MRPIF GN  YDTRQSELERLF+KYGR++R+DMKSGFAFVY+E+ERDAE++IR+LDN+PF
Sbjct: 1   MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPF 60

Query: 296 GYDRRRLSVEWARGERGRSRDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKV 355
           G+++RRLSVEWARGERGR RDGSK  ANQRPTKTLFVINFDPIRTRV DIE+HFEPYG V
Sbjct: 61  GHEKRRLSVEWARGERGRHRDGSK--ANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNV 120

Query: 356 LNVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRA 415
           L+VRIRRNFAFVQFETQE+ATKALECT+MSKILDRVVSVEYALRDDGERGD+Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNY-DSPRRG 180

Query: 416 AYGRLGDSPYRRSPSPVYHRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPDYGRN 475
            Y         RSPSPVYHRRPSPDYGR RSP YDRYNG  +RRRSPDYGR RSPDYG+ 
Sbjct: 181 GYD--------RSPSPVYHRRPSPDYGRPRSPVYDRYNGGPDRRRSPDYGRRRSPDYGKP 240

Query: 476 RSPDYGRNRSPDYGRNRSPEFGRNRSPEFGRNRSPEVGRNRSPEVGRDRS 526
           RSPDY + RSPDY + RSP+FG+ RSP+FG+ RSP+ G+ RSPE GR RS
Sbjct: 241 RSPDYVKPRSPDYVKPRSPDFGKPRSPDFGKPRSPDFGKPRSPEYGRFRS 279

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS31_ARATH	2.4e-98	73.83	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 S...	[more]
RS31A_ARATH	2.6e-92	69.70	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2...	[more]
RS40_ARATH	2.2e-70	49.01	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 S...	[more]
SRS41_ARATH	1.1e-69	50.57	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 S...	[more]
PP371_ARATH	1.0e-43	40.16	Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG03g15890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9T543_PHAAN	2.1e-128	75.80	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan181s000800 PE=4 SV=1	[more]
V7APP1_PHAVU	6.6e-127	73.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G116100g PE=4 SV=1	[more]
A0A0A0L8H4_CUCSA	2.6e-123	91.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1	[more]
A0A0S3SZJ1_PHAAN	3.2e-121	77.93	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G175800 PE=...	[more]
A0A0B2Q2U8_GLYSO	4.6e-112	77.03	Arginine/serine-rich-splicing factor RSP31 OS=Glycine soja GN=glysoja_013127 PE=...	[more]

BLAST of Cp4.1LG03g15890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61860.1	1.4e-99	73.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	1.5e-93	69.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	1.2e-71	49.01	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	2.7e-71	49.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08510.1	5.7e-45	40.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG03g15890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920678733\|gb\|KOM25730.1\|	3.0e-128	75.80	hypothetical protein LR48_Vigan181s000800 [Vigna angularis]	[more]
gi\|593266206\|ref\|XP_007135281.1\|	9.5e-127	73.33	hypothetical protein PHAVU_010G116100g [Phaseolus vulgaris]	[more]
gi\|449432024\|ref\|XP_004133800.1\|	3.7e-123	91.09	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus...	[more]
gi\|951067109\|ref\|XP_014524133.1\|	5.4e-122	78.28	PREDICTED: serine/arginine-rich splicing factor RS31 [Vigna radiata var. radiata...	[more]
gi\|965611992\|dbj\|BAT98131.1\|	4.6e-121	77.93	hypothetical protein VIGAN_09175800 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR002885	Pentatricopeptide_repeat
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0018149	peptide cross-linking
biological_process	GO:0008150	biological_process
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15890.1	Cp4.1LG03g15890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 330..392 score: 4.4E-11coord: 239..296 score: 2.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 238..305 score: 6.2E-14coord: 329..395 score: 1.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 237..309 score: 17.063coord: 328..399 score: 15
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 95..117 score: 9.9E-4coord: 195..221 score: 6.4E-4coord: 165..189 score: 0
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 95..126 score: 4.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 125..159 score: 5.755coord: 89..124 score: 7.958coord: 192..226 score: 8.977coord: 160..190 score: 8
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 307..405 score: 2.4E-19coord: 233..306 score: 4.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 237..402 score: 3.04
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 26..221 score: 4.8
None	No IPR available	PANTHER	PTHR24015:SF148	SUBFAMILY NOT NAMED	coord: 26..221 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g15890	Cucsa.259460	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g15890	CmaCh14G021260	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g15890	CmaCh06G009810	Cucurbita maxima (Rimu)	cmacpeB834
Cp4.1LG03g15890	CmoCh14G021870	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g15890	CmoCh06G010240	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g15890	Cla021132	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g15890	Csa3G119350	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g15890	MELO3C006002	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g15890	Lsi05G021500	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g15890	MELO3C006002.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g15890	Bhi01G000378	Wax gourd	cpewgoB0770
Cp4.1LG03g15890	Carg25710	Silver-seed gourd	carcpeB0179
Cp4.1LG03g15890	Carg20910	Silver-seed gourd	carcpeB1379

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g15890	Cp4.1LG08g00850	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g15890	Wax gourd	cpewgoB0761
Cp4.1LG03g15890	Cucurbita pepo (Zucchini)	cpecpeB217
Cp4.1LG03g15890	Cucurbita pepo (Zucchini)	cpecpeB479
Cp4.1LG03g15890	Cucumber (Gy14) v1	cgycpeB0574
Cp4.1LG03g15890	Cucurbita maxima (Rimu)	cmacpeB639
Cp4.1LG03g15890	Cucurbita maxima (Rimu)	cmacpeB839
Cp4.1LG03g15890	Cucurbita moschata (Rifu)	cmocpeB589
Cp4.1LG03g15890	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g15890	Wild cucumber (PI 183967)	cpecpiB624
Cp4.1LG03g15890	Cucumber (Chinese Long) v2	cpecuB622
Cp4.1LG03g15890	Bottle gourd (USVL1VR-Ls)	cpelsiB486
Cp4.1LG03g15890	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g15890	Watermelon (97103) v1	cpewmB616
Cp4.1LG03g15890	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g15890	Cucumber (Gy14) v2	cgybcpeB678
Cp4.1LG03g15890	Melon (DHL92) v3.6.1	cpemedB651
Cp4.1LG03g15890	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g15890	Cucumber (Chinese Long) v3	cpecucB0774