Cp4.1LG08g00850.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00850.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Arginine/serine-rich splicing factor, putative
Location	Cp4.1LG08 : 3988538 .. 3992010 (+)
Sequence length	1281

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTACAGTGAAAATACTAGGGCTTTCTTTTGGTATTTAAAATGAACTGAAAATTGGATCACATAGGGCTCTTCAAAAAGATACAGGCTTTCTCTTCCTCTCTCCTAGGGTTTTTCTTCTGTTCGAGTCCAAGAATCTGCAAGGTTTGTTTCTGCAATCATATGATCCATGCTATTCTAAGCATTTTTCATTCGCTACTTGATCGATTTACTTCTTGTTTCTGGTCAAACTCTGAAAGTGAGTTCTTCGTTAACGCATTCCTTTACCTCTCTTATCCCTTTGATCTCTTCTAGTTTAACTGGAAAAAGAATAGATATCACTATGTTGGTGAAGTTGTTTACTAGTTTCTTTTTATGGTCTTGTCATTTTGTTAATCTTGGGACTTGTTGGCTTTGTTTTCTACAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTATACTGCAATTTCTTTGTAATACCATGCAGTGCCGTTTTTAACGAAGATGTTCTAATGTTGAATATTTTTATTTCTAAGGTGGTATGAGGGAACTGTGGTGCTTACTTAAATTTTTTGTTTTTGTTTATTGTGAAACTGTAAATTTCCTTACCTAGTTTTGACATGCGAAGGTAATAGATGTATGGAAAAGACTGTGTTCAACTTGATTTAGGATATGCGTATTGGATGTTGCATTTGGATTACGGGGTATATTTTAATTTAATGCTGCAATATTCCCAGTGAACCACCTTCCTTTTGTAGTGTGTTGATCTTGGTATGGTGACATGGACCTGCATATATGTATGCATTCATGGATGACTTTATTGTTTTGGGTTTTACGAAGTATTGTCAAATGTTATTTCCTTGTTTAAACTTTCTAGTTGCTGATCTTTTTCTTGTTACTTATGGGCTTTTAGTTTCGCTTTCATTGTTTGTAATCATCTTAACTACTCTATATTTAAGTTCATAATTGTATAGTTGTCTTCTGGAATTTTCTTGTCTCTTACCCACCTTCCCTGACATCCTTAATCCTACGTAGTTATCGTTCAGTTAATGATTTTAGACATCTTGGGTTTTCTGGTGTATGAAATTATGGTATTTTAGTTCGAGGATGTTCCACTGGTGCTAATACTTGGTATTTCAGTGCGAGGATGCTCCACTGACGCTAATACTAGGTAAAAAAGTTGTGTCAAGTTTTTATCAATAAGACAAGAAATTGATGTTTTTTTTAAATTCTAAAACCCTGTTCAGTGACATGGATGCATAGCTATTATGCTATGATAATATCCGCTGGTCCATTTTTTCTGATGAAAACTTGATGGGAGGCAAAAATTTACTATTTTTATGGGGAAAACCTCCATATAAGATGTTTCTTTTGACGCAGGAATTTCTACTAAGGAAAATGAACCAAGCTCCTATCTGGGCTCATCACCATCTGTGCATAAAAATTAATTTGGAAGGAAACTTCCTGCTTGCCTGCTTAGCTTCATCTAAAGATATCATCATCCTGATTTTTCTTCAATCAATCATTCGTCATTCATCTACCTCTTCACTTAAGTTGCAATACACCAGAATCGTCTTAATGGATTGATCTTTATCTCACGCCTCATCAATTAAGTCGCAATTCACCAGAATCGTCTTAATGGATGTTCTATATCTCATGCCTTGCCTACCTATCACCTCTGATCATAGGACATCACTGAATTCTGGTCATGCCTCCCATTTGATAATAGTGGCTGAATGAATCTGTCTTGCCATGCCTTCCATTTCTGAACTCGTGCTGTGTGAAAGGCGAAGCATGGTTGAAATTTTGGATTAAAACCTTTAGTATGCAACCATCTTATTTCATCATGCAACGTCTCTACAGCTAAATGTGCATCAGTCCTACCATATTTTCAGGTGTTGTACTTTTTATAGTTTATCCCAGGGAAAGAAATCATGAGGCTGAGTGACAATACCTGCTAAATAGATAATGCTTCAATATCTTACCATATTTTATATATCTAATTGTTCTATTTTGTAGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTAGGCCTTTCTCCCACCGTTGTTGCCCCCTTTCTTGGGTCTATGCATTTTAGAAGCTGGTTTATTTCATGCTTTGAAAATATCTCTTTCTTTTCATATATGGCAACCAATAGTTGATTTTAACTTTAGCTTTTTGTTTGGTTGGGTTAGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGGTTAGCAGTGTTTTGGGTTTCCCACATGGTTGTTGCTCCTTTCAATTGGCATATTTAATTTCTTTCTCTAAAATACTGTATTGGCTTTATAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGGTAATTTTTTTTATCTTTTTCATAGTTGGCTCAGCTTCCATTTGAGTTGTTGTCACATATCTCTTTTAGCTTATAAATTCAAGCTAACTCCCCGTTTTTCATAACTATGTTGACAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGCTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGAATTAGTAGTTGCTTTGGTGTTAACGTTTTACCAAGGCTGTCCTGTCTTAACGATGTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCAATGCATGAGCTTTGTTGAATTCCCTCACTGAGGCCCTTTATCTTTCATCATCT

mRNA sequence

TATCTACAGTGAAAATACTAGGGCTTTCTTTTGGTATTTAAAATGAACTGAAAATTGGATCACATAGGGCTCTTCAAAAAGATACAGGCTTTCTCTTCCTCTCTCCTAGGGTTTTTCTTCTGTTCGAGTCCAAGAATCTGCAAGCGCGTTTGATAGTATCAACGATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGAAGAAAAAAGCTAATTTGGATTTTCAGCTACATTCTTAGGTGTAGGTAATGGTGGAGTGTTTAGATATTAGTGACAAGTTCCTGTACTATAAAACCAACCCCTATATTGACTACTTGAACAATTGTTGGTAGTTTGGGGATGATGATGAAACACGTTTCTCTGTTTTTGAATTAGTAGTTGCTTTGGTGTTAACGTTTTACCAAGGCTGTCCTGTCTTAACGATGTGTCAGTGGCCACGAGCCGGCGTCCTTTCAGTTAGTGTTAATTCCTGGTTTACTTCTATCTAGTACGTCTTGTCTAAACGATTTGTGGCAATGCATGAGCTTTGTTGAATTCCCTCACTGAGGCCCTTTATCTTTCATCATCT

Coding sequence (CDS)

ATGAAGCCGATATTTGTTGGGAACTTTGGGTATGACACCCGGCAATCTGAGCTGGAGCGGGCATTCGCCAAATATGGGAGGGTCGATAGGATCGACATGAAATCTGGTTTTGCTTTTGTTTACTTTGAAGATGAGAGGGATGCTGATGATGCTATTCGTGGCCTTGATAACATGCCATTTGGTCATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGGGGTCGTCATCGTGATGGATCCAAGTCGATGGCAAATCAGAGGCCAACCAAAACCTTGTTTGTGATCAATTTCGACCCAATTCATACTAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTCCTCAATGTCCGCATAAGAAGGAACTTTTCATTTGTACAATTTGAGACGCAGGAGGAGGCAACCAAAGCCCTTGAGTGTACACACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACCCTTATGATGATAGCCCCCGGAGAGCAGCATATGGGCGGCCTGGGGATAGTCCTTACCGGAGGTCACCTAGTCCATTGCGCCGTCGACCAAGTCCTGACTATGGGCCTCGCAGCCCTGCTTATGACAGGTATAATGGCCCTCGTGAACGACGCAAGAGTCCTGATTATGCTCGGAATCGAAGCCCTGAATATGGTAGATATCGCAGTCGTTCACCCATTCGGAGGTCAAGAACCTGA

Protein sequence

MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFGHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNGPRERRKSPDYARNRSPEYGRYRSRSPIRRSRT

Homology

[Close]

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot
Match: SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 SV=2)

HSP 1 Score: 331.3 bits (848), Expect = 9.4e-90
Identity = 182/263 (69.20%), Postives = 205/263 (77.95%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 180
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 181 A---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSP------- 240
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SP       
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 241 DYARNRSPEYGRYRSRSPIRRSR 249
           DY R RSP Y RYRSRSP+ R R
Sbjct: 241 DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot
Match: RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.9e-84
Identity = 172/250 (68.80%), Postives = 199/250 (79.60%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 181 RRAAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDYARNRSP 240
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPDY R RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 236

Query: 241 EYGRYRSRSP 244
           +YGR R+RSP
Sbjct: 241 DYGRARARSP 236

[Close]

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot
Match: RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-66
Identity = 146/266 (54.89%), Postives = 184/266 (69.17%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIHTRVRDIERHFEP 120
           G   RRL VEW + ERG   R   GS+ S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 180
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +  S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH--S 180

Query: 181 PRRAAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDYARNR---- 240
           P R     P     RRSPSP +R R SPDYG  +     Y   R+ R SPDY R R    
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 241 -------SPEYGRYR--SRSPIRRSR 249
                  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot
Match: SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-66
Identity = 145/275 (52.73%), Postives = 181/275 (65.82%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+S+LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD  +TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GK++NVRIRRNF+F+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 RR-----------AAYGRPGDSP-YRRSPSPL---RRRPSPDYGPR------------SP 240
           RR           + Y R   SP Y R  SP+   R R SPDYG              SP
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP 240

Query: 241 AYDRYNGPRERRKSPDYA--RNRSPEYGRYRSRSP 244
            Y R +  RER  SP+    RNRSP  GR  SRSP
Sbjct: 241 DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275

[Close]

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 83/266 (31.20%), Postives = 113/266 (42.48%), Query Frame = 1


Query: 4   IFVGNFGYDTRQSELERAFAKYGRVDRIDMKSG----FAFVYFEDERDADDAIRGLDNMP 63
           ++VGN   D R+ E+E  F KYGR+  +D+KSG    FAFV FED RDA+DA+R  D   
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 64  FGHDRRRLSVEWARG------------ERGRH--------RDGSKSMANQRPTKTLFVIN 123
           F  D RR+ VE+ RG            + G H        R G +    QR T    ++ 
Sbjct: 71  F--DGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVE 130

Query: 124 FDPIHTRVRDIERHFEPYGKVLNVRIRRN-FSFVQFETQEEATKALECTHMSKILDRVVS 183
             P     +D++ H    G V    + R+    V+F   E+   A+     +K       
Sbjct: 131 GLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGE 190

Query: 184 VEY-ALRDDGERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGPRSPAYDRYNG 243
             Y  +R+D   G          + G   D    RSP    RR SP Y PR         
Sbjct: 191 TAYIRVREDNSSGG--------GSGGGGRDRSRSRSPR-AERRASPKYSPR--------- 250

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL
Match: A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 9.0e-124
Identity = 229/253 (90.51%), Postives = 242/253 (95.65%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEY-G 240
             YGRPGDSPYRRSPSP+ RRRPSPDYG   SPAYDRYNGP ERR+SPDY RNRSPEY G
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RYRSRSPIRRSRT 250
           R+RSRSPIRRSRT
Sbjct: 241 RFRSRSPIRRSRT 253

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL
Match: A0A067K840_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14221 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 8.2e-109
Identity = 207/252 (82.14%), Postives = 226/252 (89.68%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           ++P+FVGNF YDTRQS+LER F+KYGRVDR+DMKSGFAFVYFEDERDA  AIRGLDN PF
Sbjct: 3   LRPVFVGNFEYDTRQSDLERLFSKYGRVDRVDMKSGFAFVYFEDERDAAGAIRGLDNTPF 62

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGS+SMANQRPTKTLFVINFDPI TRV DI+RHFE YG+V
Sbjct: 63  GYDRRRLSVEWARGERGRHRDGSRSMANQRPTKTLFVINFDPIRTRVEDIKRHFERYGEV 122

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGE+GD Y DSPRR 
Sbjct: 123 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGEKGDRY-DSPRRG 182

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +Y       Y RSPSP+ RRRPSPDY G RSP YD+YNGP  +RR+SPDY RNRSPEYGR
Sbjct: 183 SY-------YGRSPSPVYRRRPSPDYGGARSPVYDKYNGPAYDRRRSPDYGRNRSPEYGR 242

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 243 YRSRSPIRRSRT 246

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL
Match: W9S2E8_9ROSA (Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.2e-106
Identity = 200/242 (82.64%), Postives = 219/242 (90.50%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYG V+R+DMKSGFAFVYF+D+RDA+DAIRGLD+ PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGPVERVDMKSGFAFVYFDDDRDAEDAIRGLDSRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRHRDGS+   NQRPTKTLFVINFDP+HTRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHRDGSRP--NQRPTKTLFVINFDPLHTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKI+DRVVSVEYAL+DD ERGD Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKIIDRVVSVEYALKDDDERGDRYYDSPRRG 180

Query: 181 AYGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
            YGR   SPYRRSPSP  RRRPSPDYG PRSP YDRY+GP  +RRKSP Y RN SPEYGR
Sbjct: 181 GYGR--HSPYRRSPSPAYRRRPSPDYGRPRSPVYDRYDGPAYDRRKSPGYGRNISPEYGR 238

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL
Match: A0A068UJD0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027680001 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.0e-106
Identity = 204/252 (80.95%), Postives = 221/252 (87.70%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+F GNF Y+TRQS+LER F+KYGRV+R+DMKSGFAFVYFEDERDA+DAIRGLDN PF
Sbjct: 1   MRPVFCGNFEYETRQSDLERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNAPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           GHDRRRLSVEWA+GERGRHRD S+SM NQRPTKTLFVINFDPI TR+RDIERHFEPYGKV
Sbjct: 61  GHDRRRLSVEWAKGERGRHRDSSRSMVNQRPTKTLFVINFDPIRTRIRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGD Y DSPRR 
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDRY-DSPRR- 180

Query: 181 AYGRPGDSPYRRSPSPL--RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEYGR 240
            YG  G SPYRRSPSP+  R R SPDYG  RSP YD+YNGP ERR        RSPEY R
Sbjct: 181 DYGGRGGSPYRRSPSPVYRRGRASPDYGHVRSPVYDKYNGPYERR--------RSPEYDR 240

Query: 241 YRSRSPIRRSRT 250
           +RSRSP+RRSRT
Sbjct: 241 HRSRSPVRRSRT 242

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL
Match: V4U1V1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021673mg PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.2e-104
Identity = 204/269 (75.84%), Postives = 224/269 (83.27%), Query Frame = 1


Query: 2   KPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPFG 61
           +PIFVGNF Y+TRQSELER F+KYGR++R+DMKSGFAFVYFED+RDA DAIRGLDN+PFG
Sbjct: 3   RPIFVGNFEYETRQSELERLFSKYGRIERVDMKSGFAFVYFEDDRDAADAIRGLDNIPFG 62

Query: 62  HDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKVL 121
           +DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TR RDI+RHFEPYG VL
Sbjct: 63  YDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL 122

Query: 122 NVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRAA 181
           +VRIRRNF+FVQFETQEEATKALE T  SK++DRV+SVEYAL+DD ER D Y DSPRR  
Sbjct: 123 HVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDSERDDRY-DSPRRGG 182

Query: 182 YGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGP-------------------RE 241
           YGR   SPY RSPSP  RRRPSPDYG  RSPAYDRYNGP                    +
Sbjct: 183 YGR--HSPYGRSPSPAYRRRPSPDYGRGRSPAYDRYNGPVYDQRRSPDHGRHRSPVPVYD 242

Query: 242 RRKSPDYARNRSPEYGRYRSRSPIRRSRT 250
           RR+SPDY RNRSP +GRYRSRSP+RRSRT
Sbjct: 243 RRRSPDYGRNRSPNFGRYRSRSPVRRSRT 268

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10
Match: AT3G61860.1 (AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 331.3 bits (848), Expect = 5.3e-91
Identity = 182/263 (69.20%), Postives = 205/263 (77.95%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQS+LER F KYGRVDR+DMKSG+AFVYFEDERDA+DAIR LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+++RRLSVEWA+GERGR R  +K+ +N +PTKTLFVINFDPI T+  DIE+HFEPYGKV
Sbjct: 61  GYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDD-SPRR 180
            NVRIRRNFSFVQFETQE+ATKALE T  SKILDRVVSVEYAL+DD ER D     SPRR
Sbjct: 121 TNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRR 180

Query: 181 A---AYGRPGDSPYRRSPSPLR-RRPSPDYG-PRSPAYDRYNGPR--ERRKSP------- 240
           +    Y R     Y R PSP + RRPSPDYG  RSP YDRY GP   ERR+SP       
Sbjct: 181 SLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSS 240

Query: 241 DYARNRSPEYGRYRSRSPIRRSR 249
           DY R RSP Y RYRSRSP+ R R
Sbjct: 241 DYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10
Match: AT2G46610.1 (AT2G46610.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-85
Identity = 172/250 (68.80%), Postives = 199/250 (79.60%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+ ++VGNF YDTR S+LER F+K+GRV R+DMKSG+AFVYFEDERDA+DAIR  DN  F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GHDRRRLSVEWAR---GERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G+ RR+LSVEWA+   GERG+ RDG K+++NQRPTKTLFVINFDPI TR RD+ERHFEPY
Sbjct: 61  GYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDMERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GKVLNVR+RRNF+FVQF TQE+ATKAL+ TH SK+LD+VVSVEYALR+ GER D Y  S 
Sbjct: 121 GKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSR 180

Query: 181 RRAAYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR--ERRKSPDYARNRSP 240
           R            RRSPSP+ RRRPSPDY   RSP YDRY GP   ERRKSPDY R RS 
Sbjct: 181 R------------RRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGR-RSS 236

Query: 241 EYGRYRSRSP 244
           +YGR R+RSP
Sbjct: 241 DYGRARARSP 236

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10
Match: AT4G25500.1 (AT4G25500.1 arginine/serine-rich splicing factor 35)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-67
Identity = 146/266 (54.89%), Postives = 184/266 (69.17%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+ +LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   F
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSK-SMANQRPTKTLFVINFDPIHTRVRDIERHFEP 120
           G   RRL VEW + ERG   R   GS+ S ++ RP+KTLFVINFD  +TR RD+E+HFEP
Sbjct: 61  GRKGRRLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEP 120

Query: 121 YGKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDS 180
           YGK++NVRIRRNF+F+Q+E QE+AT+AL+ ++ SK++D+V+SVEYA++DD  RG+ +  S
Sbjct: 121 YGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH--S 180

Query: 181 PRRAAYGRPGDSPYRRSPSPLRR-RPSPDYGPRSPAYDRYNGPRERRKSPDYARNR---- 240
           P R     P     RRSPSP +R R SPDYG  +     Y   R+ R SPDY R R    
Sbjct: 181 PERRRDRSP--ERRRRSPSPYKRERGSPDYGRGASPVAAY---RKERTSPDYGRRRSPSP 240

Query: 241 -------SPEYGRYR--SRSPIRRSR 249
                  SPEYGR R  + SP RR R
Sbjct: 241 YKKSRRGSPEYGRDRRGNDSPRRRER 259

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10
Match: AT5G52040.2 (AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-67
Identity = 145/275 (52.73%), Postives = 181/275 (65.82%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           MKP+F GNF YD R+S+LER F KYG+V+R+DMK+GFAFVY EDERDA+DAIR LD   +
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GHDRRRLSVEWARGERG---RHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPY 120
           G   RRL VEW + +RG   R     +S +  RP+KTLFVINFD  +TR RD+ERHFEPY
Sbjct: 61  GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY 120

Query: 121 GKVLNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSP 180
           GK++NVRIRRNF+F+Q+E QE+AT+AL+ T+ SK++D+V+SVEYA++DD  RG+ Y    
Sbjct: 121 GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER 180

Query: 181 RR-----------AAYGRPGDSP-YRRSPSPL---RRRPSPDYGPR------------SP 240
           RR           + Y R   SP Y R  SP+   R R SPDYG              SP
Sbjct: 181 RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP 240

Query: 241 AYDRYNGPRERRKSPDYA--RNRSPEYGRYRSRSP 244
            Y R +  RER  SP+    RNRSP  GR  SRSP
Sbjct: 241 DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSP 275

[Close]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 88/277 (31.77%), Postives = 116/277 (41.88%), Query Frame = 1


Query: 2   KPIFVGNFGYDTRQSELERAFAKYGRVDRIDMK-----SGFAFVYFEDERDADDAIRGLD 61
           + ++VGN   D R+ E+E  F+KYG V +ID+K      G+AFV F+D RDA+DAI G D
Sbjct: 7   RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66

Query: 62  NMPFGHDRRRLSVEWARGER-----------------GRHRDGSKSMANQRPTKTLFVIN 121
              F  D  RL VE A G R                 GR R    S    R ++   ++ 
Sbjct: 67  GYDF--DGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVT 126

Query: 122 FDPIHTRVRDIERHFEPYGKVLNVRIRRN-------FSFVQFETQEEATKALECTHMSKI 181
             P     +D++ H    G V   ++ R+         +  +E  + A K L+ T     
Sbjct: 127 GLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNA 186

Query: 182 LDR--VVSVEYALRDDG---ERGDPYDDSPRRAAYGRPGDSPYRRSPSPLRRRPSPDYGP 241
                V   EY  R D     RG  Y  S R  + GR       RS S   R P      
Sbjct: 187 FSNGYVRVREYDSRKDSRSPSRGRSYSKS-RSRSRGRSVSRSRSRSRS-RSRSPKAKSSR 246

Query: 242 RSPAYDRYNGPRERRKSPDYARNRSPEYGRYRSRSPI 245
           RSPA      P  R KS    R+ SP   R RSRSP+
Sbjct: 247 RSPAKSTSRSPGPRSKS----RSPSPRRSRSRSRSPL 275

[Close]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr
Match: gi|449432024|ref|XP_004133800.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 229/253 (90.51%), Postives = 242/253 (95.65%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+PIFVGNFGYDTRQSELER F+KYGRV+RIDMKSGFAFVYFEDERDA+DAIRGLDN+PF
Sbjct: 1   MRPIFVGNFGYDTRQSELERLFSKYGRVERIDMKSGFAFVYFEDERDAEDAIRGLDNLPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPI TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           LNVRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGERGDP+D+SPRRA
Sbjct: 121 LNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA 180

Query: 181 -AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPRERRKSPDYARNRSPEY-G 240
             YGRPGDSPYRRSPSP+ RRRPSPDYG   SPAYDRYNGP ERR+SPDY RNRSPEY G
Sbjct: 181 GGYGRPGDSPYRRSPSPVFRRRPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGG 240

Query: 241 RYRSRSPIRRSRT 250
           R+RSRSPIRRSRT
Sbjct: 241 RFRSRSPIRRSRT 253

[Close]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr
Match: gi|1009142455|ref|XP_015888731.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 424.1 bits (1089), Expect = 1.7e-115
Identity = 216/252 (85.71%), Postives = 233/252 (92.46%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF YDTRQSELER F+KYGRV+R+DMKSGFAFVYFEDERDA+DAIRGLDN PF
Sbjct: 1   MRPVFVGNFEYDTRQSELERLFSKYGRVERVDMKSGFAFVYFEDERDAEDAIRGLDNRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRD S+  ANQRPTKTLFVINFDP+ TRVRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWARGERGRHRDDSRLSANQRPTKTLFVINFDPLRTRVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYAL+DDGERGD Y DSPRR 
Sbjct: 121 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALKDDGERGDRY-DSPRRG 180

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +YGR GDSPY RSPSPL RRRPSPDYG PRSPAYDRYNG   ++R+SPDY RN SPEYGR
Sbjct: 181 SYGRRGDSPYGRSPSPLYRRRPSPDYGRPRSPAYDRYNGSSYDKRRSPDYGRNLSPEYGR 240

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 241 YRSRSPIRRSRT 251

[Close]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr
Match: gi|645254569|ref|XP_008233099.1| (PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume])

HSP 1 Score: 418.7 bits (1075), Expect = 7.1e-114
Identity = 209/252 (82.94%), Postives = 232/252 (92.06%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQSELER F+K+GRVDR+DMKSGFAFVYFEDERDA+DAI+ LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSELERLFSKHGRVDRVDMKSGFAFVYFEDERDAEDAIQNLDNKPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRH DGSKS+ANQRPTKTLFVINFDP+ T+VRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHHDGSKSVANQRPTKTLFVINFDPLRTKVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQF+TQEEATKALE TH SKILDRVVSVEYALRDDGERGD Y DSP+R 
Sbjct: 121 LHVRIRRNFAFVQFDTQEEATKALEATHASKILDRVVSVEYALRDDGERGDRYHDSPKRG 180

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDYG-PRSPAYDRYNGP-RERRKSPDYARNRSPEYGR 240
           +YGR GDSP+ RSPSP+ RRRPSPDYG PRSPAYDRYNGP  +R +SPDY RN SPEYGR
Sbjct: 181 SYGRRGDSPFGRSPSPVYRRRPSPDYGRPRSPAYDRYNGPVYDRHRSPDYGRNESPEYGR 240

Query: 241 YRSRSPIRRSRT 250
           YRSRSP+RRSRT
Sbjct: 241 YRSRSPVRRSRT 252

[Close]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr
Match: gi|694400704|ref|XP_009375433.1| (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 406.4 bits (1043), Expect = 3.7e-110
Identity = 207/258 (80.23%), Postives = 231/258 (89.53%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           M+P+FVGNF Y+TRQSEL+R F+KYGR++R+DMKSGFAFVYFEDERDA++AI  LDN PF
Sbjct: 1   MRPVFVGNFEYETRQSELDRLFSKYGRIERVDMKSGFAFVYFEDERDAEEAIHHLDNRPF 60

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWA+GERGRH DGSKS+ANQRPTKTLFVINFDP+HT+VRDIERHFEPYGKV
Sbjct: 61  GYDRRRLSVEWAKGERGRHHDGSKSLANQRPTKTLFVINFDPVHTKVRDIERHFEPYGKV 120

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDG-----ERGDPYDD 180
           L+VRIRRNF+FVQF+TQEEATKAL+ TH+SKILDRVVSVEYALRDD      ERGD Y D
Sbjct: 121 LHVRIRRNFAFVQFDTQEEATKALQATHLSKILDRVVSVEYALRDDSERGDVERGDRYRD 180

Query: 181 S-PRRAAYGRPGDSPYRRSPSP-LRRRPSPDYG-PRSPAYDRYNGP-RERRKSPDYARNR 240
           S PRR +YGR GDSPY RSPSP  RRRPSPDYG PRSP YDRYNGP  +RR+SP+Y RN 
Sbjct: 181 SPPRRGSYGRRGDSPYGRSPSPGYRRRPSPDYGRPRSPVYDRYNGPVYDRRRSPEYGRNE 240

Query: 241 SPEYGRYRSRSPIRRSRT 250
           SPEYGRYRSRSPIRRSRT
Sbjct: 241 SPEYGRYRSRSPIRRSRT 258

[Close]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr
Match: gi|802694339|ref|XP_012083147.1| (PREDICTED: serine/arginine-rich splicing factor RS31-like [Jatropha curcas])

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 207/252 (82.14%), Postives = 226/252 (89.68%), Query Frame = 1


Query: 1   MKPIFVGNFGYDTRQSELERAFAKYGRVDRIDMKSGFAFVYFEDERDADDAIRGLDNMPF 60
           ++P+FVGNF YDTRQS+LER F+KYGRVDR+DMKSGFAFVYFEDERDA  AIRGLDN PF
Sbjct: 3   LRPVFVGNFEYDTRQSDLERLFSKYGRVDRVDMKSGFAFVYFEDERDAAGAIRGLDNTPF 62

Query: 61  GHDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIHTRVRDIERHFEPYGKV 120
           G+DRRRLSVEWARGERGRHRDGS+SMANQRPTKTLFVINFDPI TRV DI+RHFE YG+V
Sbjct: 63  GYDRRRLSVEWARGERGRHRDGSRSMANQRPTKTLFVINFDPIRTRVEDIKRHFERYGEV 122

Query: 121 LNVRIRRNFSFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDGERGDPYDDSPRRA 180
           L+VRIRRNF+FVQFETQE+ATKALECTHMSKILDRVVSVEYALRDDGE+GD Y DSPRR 
Sbjct: 123 LHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGEKGDRY-DSPRRG 182

Query: 181 AYGRPGDSPYRRSPSPL-RRRPSPDY-GPRSPAYDRYNGPR-ERRKSPDYARNRSPEYGR 240
           +Y       Y RSPSP+ RRRPSPDY G RSP YD+YNGP  +RR+SPDY RNRSPEYGR
Sbjct: 183 SY-------YGRSPSPVYRRRPSPDYGGARSPVYDKYNGPAYDRRRSPDYGRNRSPEYGR 242

Query: 241 YRSRSPIRRSRT 250
           YRSRSPIRRSRT
Sbjct: 243 YRSRSPIRRSRT 246

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS31_ARATH	9.4e-90	69.20	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana GN=RS31 PE=1 S...	[more]
RS31A_ARATH	5.9e-84	68.80	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2...	[more]
RS40_ARATH	1.9e-66	54.89	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana GN=RS40 PE=1 S...	[more]
SRS41_ARATH	2.5e-66	52.73	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana GN=RS41 PE=1 S...	[more]
RSP3_CAEEL	1.7e-14	31.20	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rs...	[more]

BLAST of Cp4.1LG08g00850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8H4_CUCSA	9.0e-124	90.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119350 PE=4 SV=1	[more]
A0A067K840_JATCU	8.2e-109	82.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14221 PE=4 SV=1	[more]
W9S2E8_9ROSA	2.2e-106	82.64	Arginine/serine-rich-splicing factor RSP31 OS=Morus notabilis GN=L484_023468 PE=...	[more]
A0A068UJD0_COFCA	5.0e-106	80.95	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027680001 PE=4 SV=1	[more]
V4U1V1_9ROSI	1.2e-104	75.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021673mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00850.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61860.1	5.3e-91	69.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G46610.1	3.3e-85	68.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.1	1.1e-67	54.89	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	1.4e-67	52.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.1	1.1e-14	31.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG08g00850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432024\|ref\|XP_004133800.1\|	1.3e-123	90.51	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Cucumis sativus...	[more]
gi\|1009142455\|ref\|XP_015888731.1\|	1.7e-115	85.71	PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Ziziphus j...	[more]
gi\|645254569\|ref\|XP_008233099.1\|	7.1e-114	82.94	PREDICTED: arginine/serine-rich-splicing factor RSP31 [Prunus mume]	[more]
gi\|694400704\|ref\|XP_009375433.1\|	3.7e-110	80.23	PREDICTED: serine/arginine-rich splicing factor RS31 isoform X1 [Pyrus x bretsch...	[more]
gi\|802694339\|ref\|XP_012083147.1\|	1.2e-108	82.14	PREDICTED: serine/arginine-rich splicing factor RS31-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g00850	Cp4.1LG08g00850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g00850.1	Cp4.1LG08g00850.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g00850.1:five_prime_utr:002	Cp4.1LG08g00850.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG08g00850.1:five_prime_utr:001	Cp4.1LG08g00850.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g00850.1:cds:005	Cp4.1LG08g00850.1:cds:005	CDS
Cp4.1LG08g00850.1:cds:004	Cp4.1LG08g00850.1:cds:004	CDS
Cp4.1LG08g00850.1:cds:003	Cp4.1LG08g00850.1:cds:003	CDS
Cp4.1LG08g00850.1:cds:002	Cp4.1LG08g00850.1:cds:002	CDS
Cp4.1LG08g00850.1:cds:001	Cp4.1LG08g00850.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g00850.1:three_prime_utr:001	Cp4.1LG08g00850.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 95..157 score: 1.2E-10coord: 4..62 score: 2.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..70 score: 6.2E-15coord: 94..160 score: 3.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..74 score: 16.909coord: 93..164 score: 14
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 75..170 score: 3.1E-19coord: 4..74 score: 9.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 4..166 score: 9.46
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 4..218 score: 3.3