Cp4.1LG06g05280 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g05280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosomal RNA small subunit methyltransferase G, putative
Location	Cp4.1LG06 : 3175497 .. 3177148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGAGTTTTTTCTTAAAATATAAAAAATAAAAATAAAAAATAATTTTTATCTTAAAATTATGAATATTAATTTTAACAATTTTTTTTTTAATTTTTATTTTGATCAAATTACACCTTAATTTTATTCATTTAATAAGTTATCGTTTTTTTTTTTTTTGTCTCATTCAATAAAATAAATTATTATAATTTAAGTATTTAAAAACATTTTCTTCTATCAATTCAATAAATTAATATATTAATTTTTTTTTCTTTTTGATATAGTCATTTAGTGCTAATATGTACATTATATTTTGTATAATATATATATATATATAAATAATGAGTTCAAGAATATTTAAACAGTTTTTAAAATTAAATTAGGGGTCGAGTTGACGGTAATTAAACTAATAATAAAATATTATACGGTAAATTTAAAAACTCAGAATGAGAACAGACAAATTTAATGTCAATTATTACTGAGTTATGTTGACTTCGTTATGCATTGTGTAGGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC

mRNA sequence

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV

Homology

[Close]

BLAST of Cp4.1LG06g05280 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAAAWAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                 RK SGGGETPVRLLG E EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYK 139
           DERGRLLQ+QIAAMENGYK
Sbjct: 121 DERGRLLQEQIAAMENGYK 138

[Close]

BLAST of Cp4.1LG06g05280 vs. TrEMBL
Match: A0A068UBX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 72/160 (45.00%), Postives = 92/160 (57.50%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRK----------CEKTE--- 60
           MEALW LEDKWKLSTQ+A     CTA  V+G C A + K+R           C  TE   
Sbjct: 1   MEALWKLEDKWKLSTQEAVAFFACTAFLVIGVCFATFLKRRAKRSGLVHQEPCMNTEATD 60

Query: 61  ---RRQTKAVERWW-----------WKGAA--DTRKVSGGGE---TPVRLLGGEGEGEDF 120
              R   K +++W            W GA+  + R++SG       P+ ++GGE   E+ 
Sbjct: 61  EAKRSDQKQIKKWGAVKELLMGSVRWSGASKLEERRLSGSQRERAAPLLVVGGEKCEENL 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 127
           G  S NS++AVWQRPILMGEKCE+ ++SGLILYDERGR L
Sbjct: 121 GRLSHNSSSAVWQRPILMGEKCELPRFSGLILYDERGRPL 160

[Close]

BLAST of Cp4.1LG06g05280 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERR-----QTKAVE 60
           MEALWNLED+WKL+TQ+A +L  CTA+AV+  CAA   K RK +  +R       T + +
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLK-RKAQTKQRSVNQDPSTGSSK 60

Query: 61  RW---------W------------WKGAADTRKVSGGGET------PVRLLGGEGEGEDF 120
           RW         W            W GA+   + S G  +      P  +LG E      
Sbjct: 61  RWSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSM 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAA 133
           G  S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +
Sbjct: 121 GWQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTS 165

[Close]

BLAST of Cp4.1LG06g05280 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21
Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAA-WAKQRKCEKTE-----RRQTKAV 60
           MEALW+LE+KWKL+TQ+A +LL C A AV+G CAA    K+RK +K +     R    AV
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  ERWW-------------------WKGAADTRKVS-GGGETPVRLLGGEGEGEDFG--SRN 120
              W                   W GA    + S G  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 127
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLL 169

[Close]

BLAST of Cp4.1LG06g05280 vs. TrEMBL
Match: A0A0D2PI92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21
Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAV------ 60
           MEALW+LE+KWKL+TQ+A I+  C A A++G CAA   K +K  K +     AV      
Sbjct: 1   MEALWSLEEKWKLTTQEAVIVFVCAASAIVGLCAATVLK-KKARKKQVADGDAVGDGSMN 60

Query: 61  ERW------W-----------WKGAADTRKVS-GGGETPVRLLGGEGEGEDFG--SRNST 120
            +W      W           W GA    + S    E P  LLG E  G+  G  S NS 
Sbjct: 61  AKWREPGCSWVPKKVLMGSVMWSGAKRWGERSFRWEERPPPLLGLEEYGDSVGWRSHNSD 120

Query: 121 AAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMEN 136
           + VWQRPILMGEKCE+ ++SGLILYDERG+LL D +  + +
Sbjct: 121 SPVWQRPILMGEKCELPRFSGLILYDERGQLLDDSVKRLSD 160

[Close]

BLAST of Cp4.1LG06g05280 vs. TAIR10
Match: AT3G14760.1 (AT3G14760.1 unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAA----------------WA------ 60
           MEALW LE+K KL+T++A ++L  TA AV   C AA                WA      
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADAEWASETAFG 60

Query: 61  -----KQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNS 120
                ++RKC+ ++ ++T  +  + W  AA   ++    + P+  +          S N+
Sbjct: 61  SRTMEEKRKCKWSKVKRT-LMGSFCWSSAAKWMEMETRRQPPLLAVKER-------SLNA 120

Query: 121 TAAVWQRPILMGEKCEMLKYSGLILYDERG 124
              VWQRPILMGEKCE+ ++SGLILYDE G
Sbjct: 121 VDPVWQRPILMGEKCELPRFSGLILYDECG 142

[Close]

BLAST of Cp4.1LG06g05280 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1


Query: 97  VWQRPILMGEKCEMLKYSGLILYDERGRLLQD 129
           +WQR ILMG KCE L +SG+I YD  GRLL +
Sbjct: 107 LWQREILMGGKCEPLDFSGVIYYDSNGRLLNE 138

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.6e-56
Identity = 113/144 (78.47%), Postives = 122/144 (84.72%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAAAWAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                 RK SGGGETPVRLLG E EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYKVLLRR 144
           DERGRLLQ+QIAAMENGYKVLLR+
Sbjct: 121 DERGRLLQEQIAAMENGYKVLLRK 143

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54
Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAAAWAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                 RK SGGGETPVRLLG E EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYK 139
           DERGRLLQ+QIAAMENGYK
Sbjct: 121 DERGRLLQEQIAAMENGYK 138

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 3.1e-52
Identity = 108/140 (77.14%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+  CAAAWA++RK EK   R  +  ++ WWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHR--RRTDQRWWK 60

Query: 61  GAADTR--KVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
            AA+ R     GGGETPVRLLG E EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WAAEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLQDQIAAMENGYK 139
           YDERGRLLQDQIAAMENGYK
Sbjct: 121 YDERGRLLQDQIAAMENGYK 138

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: gi|661890563|emb|CDP06060.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 72/160 (45.00%), Postives = 92/160 (57.50%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRK----------CEKTE--- 60
           MEALW LEDKWKLSTQ+A     CTA  V+G C A + K+R           C  TE   
Sbjct: 1   MEALWKLEDKWKLSTQEAVAFFACTAFLVIGVCFATFLKRRAKRSGLVHQEPCMNTEATD 60

Query: 61  ---RRQTKAVERWW-----------WKGAA--DTRKVSGGGE---TPVRLLGGEGEGEDF 120
              R   K +++W            W GA+  + R++SG       P+ ++GGE   E+ 
Sbjct: 61  EAKRSDQKQIKKWGAVKELLMGSVRWSGASKLEERRLSGSQRERAAPLLVVGGEKCEENL 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 127
           G  S NS++AVWQRPILMGEKCE+ ++SGLILYDERGR L
Sbjct: 121 GRLSHNSSSAVWQRPILMGEKCELPRFSGLILYDERGRPL 160

[Close]

BLAST of Cp4.1LG06g05280 vs. NCBI nr
Match: gi|566194776|ref|XP_006377711.1| (hypothetical protein POPTR_0011s10460g [Populus trichocarpa])

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERR-----QTKAVE 60
           MEALWNLED+WKL+TQ+A +L  CTA+AV+  CAA   K RK +  +R       T + +
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLK-RKAQTKQRSVNQDPSTGSSK 60

Query: 61  RW---------W------------WKGAADTRKVSGGGET------PVRLLGGEGEGEDF 120
           RW         W            W GA+   + S G  +      P  +LG E      
Sbjct: 61  RWSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSM 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAA 133
           G  S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +
Sbjct: 121 GWQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTS 165

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L376_CUCSA	5.2e-54	78.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1	[more]
A0A068UBX3_COFCA	3.6e-23	45.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1	[more]
B9N7S2_POPTR	1.5e-21	43.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1	[more]
A0A061FGE7_THECC	3.4e-21	47.40	Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=...	[more]
A0A0D2PI92_GOSRA	7.5e-21	43.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g05280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14760.1	2.5e-15	36.00	unknown protein	[more]
AT1G49000.1	8.0e-06	62.50	unknown protein	[more]

BLAST of Cp4.1LG06g05280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695623\|ref\|XP_011654026.1\|	4.6e-56	78.47	PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus]	[more]
gi\|700199869\|gb\|KGN55027.1\|	7.4e-54	78.42	hypothetical protein Csa_4G622860 [Cucumis sativus]	[more]
gi\|659131296\|ref\|XP_008465611.1\|	3.1e-52	77.14	PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo]	[more]
gi\|661890563\|emb\|CDP06060.1\|	5.2e-23	45.00	unnamed protein product [Coffea canephora]	[more]
gi\|566194776\|ref\|XP_006377711.1\|	2.2e-21	43.37	hypothetical protein POPTR_0011s10460g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g05280.1	Cp4.1LG06g05280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..130 score: 8.7
None	No IPR available	PANTHER	PTHR33237:SF9	GENOMIC DNA, CHROMOSOME 3, BAC CLONE: T21E2	coord: 1..130 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g05280	CmaCh09G006800	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g05280	CmoCh09G006600	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g05280	Cla023304	Watermelon (97103) v1	cpewmB776
Cp4.1LG06g05280	Csa4G622860	Cucumber (Chinese Long) v2	cpecuB786
Cp4.1LG06g05280	ClCG11G017140	Watermelon (Charleston Gray)	cpewcgB695
Cp4.1LG06g05280	CSPI04G22480	Wild cucumber (PI 183967)	cpecpiB788
Cp4.1LG06g05280	Lsi04G019760	Bottle gourd (USVL1VR-Ls)	cpelsiB639
Cp4.1LG06g05280	CsaV3_4G032800	Cucumber (Chinese Long) v3	cpecucB0973
Cp4.1LG06g05280	Bhi09G002912	Wax gourd	cpewgoB0990
Cp4.1LG06g05280	CsGy4G020990	Cucumber (Gy14) v2	cgybcpeB566
Cp4.1LG06g05280	Carg03082	Silver-seed gourd	carcpeB0906

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g05280	Cucurbita pepo (Zucchini)	cpecpeB469
Cp4.1LG06g05280	Cucumber (Gy14) v1	cgycpeB0074
Cp4.1LG06g05280	Cucurbita maxima (Rimu)	cmacpeB503
Cp4.1LG06g05280	Cucurbita moschata (Rifu)	cmocpeB461
Cp4.1LG06g05280	Melon (DHL92) v3.5.1	cpemeB737
Cp4.1LG06g05280	Melon (DHL92) v3.6.1	cpemedB870
Cp4.1LG06g05280	Silver-seed gourd	carcpeB0432
Cp4.1LG06g05280	Cucumber (Chinese Long) v3	cpecucB0979