Cp4.1LG06g05280.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGAGTTTTTTCTTAAAATATAAAAAATAAAAATAAAAAATAATTTTTATCTTAAAATTATGAATATTAATTTTAACAATTTTTTTTTTAATTTTTATTTTGATCAAATTACACCTTAATTTTATTCATTTAATAAGTTATCGTTTTTTTTTTTTTTGTCTCATTCAATAAAATAAATTATTATAATTTAAGTATTTAAAAACATTTTCTTCTATCAATTCAATAAATTAATATATTAATTTTTTTTTCTTTTTGATATAGTCATTTAGTGCTAATATGTACATTATATTTTGTATAATATATATATATATATAAATAATGAGTTCAAGAATATTTAAACAGTTTTTAAAATTAAATTAGGGGTCGAGTTGACGGTAATTAAACTAATAATAAAATATTATACGGTAAATTTAAAAACTCAGAATGAGAACAGACAAATTTAATGTCAATTATTACTGAGTTATGTTGACTTCGTTATGCATTGTGTAGGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAAAAATTATACGAAGGGGTGAGCTTTTCCCGCGTAATATCCCTTTCTTCTTTTGGAATCATTTTTTTCCTTTTGTTTACACGTTGTCCACTTTTCGTTTGTGCCTCTCGACATTTTTACGTTGCATAAAAGAATTCAGATAGATAGTCGATTAGAAACATCACCTCGACGGGAGTTAAAAGAATATGGTTCTCGAGCTTGTAATAACAAACGTTTAATAGAACTGTGAGCTTTATATTTGGTCTGCGCAAGTGGATCGAGGTGATTCTTCAAATACAAACAGCTTGTAATAGAACGAACAAAGTTTTTCAATCACAAGGCTATAAGATATTACAATGTTCTTCATGCTTGAGGATCTTTTGACTGATTGACTGCTAAAAAAACACAAATCAGTCAACTTAACTGGAAAAATGAATGAGAGGCTGATTTTACAACAAATCACACCGCAGCCAGACACGGTTCGTTGGCTAACGTCGAGTCGAACGACACATCAATGATCAACCCTCCGAAATCTATGGTTCCTGCGGTAAACGAAGAAAGTTCGGTTGGTTTTCCTCTCATTTGCCACACTATGTATATAAAACTAGCCGTCCAAGCCCACCACTAGTAGACATTGTCCGCTTTGACTTGTTACGTATCGTC ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGGCGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGGTGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATACGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGACGGAGACGGTATAATAGTAAAAACGAGGTTGAAGGATCTACTCTAATGTCCTTCGTCTTTTATGGGAATCTTCAAAAAGAGGTGTAA MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAAWAKQRKCEKTERRQTKAVERWWWKGAADTRKVSGGGETPVRLLGGEGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRRRRYNSKNEVEGSTLMSFVFYGNLQKEV
BLAST of Cp4.1LG06g05280.1 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54 Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TrEMBL
Match: A0A068UBX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23 Identity = 72/160 (45.00%), Postives = 92/160 (57.50%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21 Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21 Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TrEMBL
Match: A0A0D2PI92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 7.5e-21 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TAIR10
Match: AT3G14760.1 (AT3G14760.1 unknown protein) HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15 Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein) HSP 1 Score: 47.8 bits (112), Expect = 8.0e-06 Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus]) HSP 1 Score: 226.1 bits (575), Expect = 4.6e-56 Identity = 113/144 (78.47%), Postives = 122/144 (84.72%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus]) HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54 Identity = 109/139 (78.42%), Postives = 117/139 (84.17%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo]) HSP 1 Score: 213.4 bits (542), Expect = 3.1e-52 Identity = 108/140 (77.14%), Postives = 117/140 (83.57%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. NCBI nr
Match: gi|661890563|emb|CDP06060.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23 Identity = 72/160 (45.00%), Postives = 92/160 (57.50%), Query Frame = 1
BLAST of Cp4.1LG06g05280.1 vs. NCBI nr
Match: gi|566194776|ref|XP_006377711.1| (hypothetical protein POPTR_0011s10460g [Populus trichocarpa]) HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21 Identity = 72/166 (43.37%), Postives = 92/166 (55.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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