CmaCh09G006800 (gene) Cucurbita maxima (Rimu)

NameCmaCh09G006800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal RNA small subunit methyltransferase G, putative
LocationCma_Chr09 : 3205037 .. 3205480 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGACGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGACGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGTAGTTTTTCTTAA

mRNA sequence

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGACGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGACGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGTAGTTTTTCTTAA

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACGCAACAAGCCTTCATTCTCTTAACGTGCACGGCGGTCGCCGTCCTAGGGTTTTGCGCGGCGACGTGGGCGAAACAGAGGAAGTGCGAGAAGACAGAGCGCCGACAGACGAAGGCGACGGAGAGGTGGTGGTGGAAGGGGGCAGCGGATAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGCGAAGGGGAAGATTTCGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATTTTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGAAGATTGCTGCAGGATCAAATTGCCGCCATGGAAAACGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGTAGTTTTTCTTAA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAAMENGYKVLLRKFFRSFS
BLAST of CmaCh09G006800 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.4e-53
Identity = 108/139 (77.70%), Postives = 116/139 (83.45%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAA WAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                RRK SGGGETPVRLLG   EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYK 137
           DERGRLLQ+QIAAMENGYK
Sbjct: 121 DERGRLLQEQIAAMENGYK 138

BLAST of CmaCh09G006800 vs. TrEMBL
Match: A0A068UBX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRK----------CEKTE--- 60
           MEALW LEDKWKLSTQ+A     CTA  V+G C AT+ K+R           C  TE   
Sbjct: 1   MEALWKLEDKWKLSTQEAVAFFACTAFLVIGVCFATFLKRRAKRSGLVHQEPCMNTEATD 60

Query: 61  ---RRQTKATERWW-----------WKGAA--DRRKVSGGGE---TPVRLLGGEG--EDF 120
              R   K  ++W            W GA+  + R++SG       P+ ++GGE   E+ 
Sbjct: 61  EAKRSDQKQIKKWGAVKELLMGSVRWSGASKLEERRLSGSQRERAAPLLVVGGEKCEENL 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 125
           G  S NS++AVWQRPILMGEKCE+ ++SGLILYDERGR L
Sbjct: 121 GRLSHNSSSAVWQRPILMGEKCELPRFSGLILYDERGRPL 160

BLAST of CmaCh09G006800 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 72/156 (46.15%), Postives = 92/156 (58.97%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATER---- 60
           MEALW+LE+KWKL+TQ+A +LL C A AV+G CAAT  K+++  K +++Q    +R    
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKR--KAQKKQMVDRDRVADG 75

Query: 61  -----W------W------------WKGAADRRKVS-GGGETPVRLLGGEGED----FGS 120
                W      W            W GA    + S G  E P  LLG EG D    + S
Sbjct: 76  AVHAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRS 135

Query: 121 RNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 125
            NS + VWQRPILMGEKCE+ ++SGLILYDERG+LL
Sbjct: 136 HNSDSPVWQRPILMGEKCELPRFSGLILYDERGQLL 169

BLAST of CmaCh09G006800 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERR-----QTKATE 60
           MEALWNLED+WKL+TQ+A +L  CTA+AV+  CAA   K RK +  +R       T +++
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLK-RKAQTKQRSVNQDPSTGSSK 60

Query: 61  RW---------W------------WKGAADRRKVSGGGET------PVRLLGGE----GE 120
           RW         W            W GA+   + S G  +      P  +LG E      
Sbjct: 61  RWSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSM 120

Query: 121 DFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAA 131
            + S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +
Sbjct: 121 GWQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTS 165

BLAST of CmaCh09G006800 vs. TrEMBL
Match: B9SZ20_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494070 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-21
Identity = 69/169 (40.83%), Postives = 89/169 (52.66%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTE------------- 60
           MEALWNLEDKW+LST++AF++  C+A AV+G C  T  K RK ++ +             
Sbjct: 1   MEALWNLEDKWRLSTKEAFLVFVCSAFAVIGLCTVTVLK-RKAQRKQMANHVETVAESSI 60

Query: 61  --------------RRQTKATERWWWKGAADRRKVSGGGETP-------VRLLGGE---- 120
                         RR    + RW     A++ +  GGG  P         LLG E    
Sbjct: 61  TWSETHDSNNWVKIRRMLMESMRW---SEANKWEEKGGGRPPPPPASASASLLGLERCDS 120

Query: 121 -GEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQDQIAA 131
            G  + S NS + VWQRPILMGEKCE+  +SGLILYDERGRLL   + +
Sbjct: 121 SGIGWQSHNSVSPVWQRPILMGEKCELPIFSGLILYDERGRLLDHSLTS 165

BLAST of CmaCh09G006800 vs. TAIR10
Match: AT3G14760.1 (AT3G14760.1 unknown protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAAT----------------WA------ 60
           MEALW LE+K KL+T++A ++L  TA AV   C A                 WA      
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADAEWASETAFG 60

Query: 61  -----KQRKCEKTERRQTKATERWWWKGAADRRKVSGGGETPVRLLGGEGEDFGSRNSTA 120
                ++RKC+ ++ ++T     + W  AA   ++    + P+  +        S N+  
Sbjct: 61  SRTMEEKRKCKWSKVKRT-LMGSFCWSSAAKWMEMETRRQPPLLAVKER-----SLNAVD 120

Query: 121 AVWQRPILMGEKCEMLKYSGLILYDERG 122
            VWQRPILMGEKCE+ ++SGLILYDE G
Sbjct: 121 PVWQRPILMGEKCELPRFSGLILYDECG 142

BLAST of CmaCh09G006800 vs. TAIR10
Match: AT1G49000.1 (AT1G49000.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.3e-06
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 1

Query: 68  VSGGGETPVRLLGGEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQD 127
           +S    T VR      E   +      +WQR ILMG KCE L +SG+I YD  GRLL +
Sbjct: 80  LSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLLNE 138

BLAST of CmaCh09G006800 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 4.0e-56
Identity = 115/149 (77.18%), Postives = 123/149 (82.55%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAA WAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADRRKVSGGGETPVRLLGGE--GEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                RRK SGGGETPVRLLG E  GE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYKVLLRKFFRSF 147
           DERGRLLQ+QIAAMENGYKVLLRK F  F
Sbjct: 121 DERGRLLQEQIAAMENGYKVLLRKLFGRF 148

BLAST of CmaCh09G006800 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 108/139 (77.70%), Postives = 116/139 (83.45%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWW-W 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+G CAA WAK+RK EK +    +  +RWW W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK-KAHPRRTDQRWWKW 60

Query: 61  KGAADRRKVSGGGETPVRLLG--GEGEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120
                RRK SGGGETPVRLLG   EGE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLILY
Sbjct: 61  PATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILY 120

Query: 121 DERGRLLQDQIAAMENGYK 137
           DERGRLLQ+QIAAMENGYK
Sbjct: 121 DERGRLLQEQIAAMENGYK 138

BLAST of CmaCh09G006800 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-50
Identity = 107/140 (76.43%), Postives = 116/140 (82.86%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATERWWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT  AV+  CAA WA++RK EK   R  + T++ WWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHR--RRTDQRWWK 60

Query: 61  GAADRR--KVSGGGETPVRLLGGE--GEDFGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
            AA+ R     GGGETPVRLLG E  GE+ GSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WAAEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLQDQIAAMENGYK 137
           YDERGRLLQDQIAAMENGYK
Sbjct: 121 YDERGRLLQDQIAAMENGYK 138

BLAST of CmaCh09G006800 vs. NCBI nr
Match: gi|661890563|emb|CDP06060.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRK----------CEKTE--- 60
           MEALW LEDKWKLSTQ+A     CTA  V+G C AT+ K+R           C  TE   
Sbjct: 1   MEALWKLEDKWKLSTQEAVAFFACTAFLVIGVCFATFLKRRAKRSGLVHQEPCMNTEATD 60

Query: 61  ---RRQTKATERWW-----------WKGAA--DRRKVSGGGE---TPVRLLGGEG--EDF 120
              R   K  ++W            W GA+  + R++SG       P+ ++GGE   E+ 
Sbjct: 61  EAKRSDQKQIKKWGAVKELLMGSVRWSGASKLEERRLSGSQRERAAPLLVVGGEKCEENL 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 125
           G  S NS++AVWQRPILMGEKCE+ ++SGLILYDERGR L
Sbjct: 121 GRLSHNSSSAVWQRPILMGEKCELPRFSGLILYDERGRPL 160

BLAST of CmaCh09G006800 vs. NCBI nr
Match: gi|590611129|ref|XP_007022014.1| (Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 72/156 (46.15%), Postives = 92/156 (58.97%), Query Frame = 1

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAVAVLGFCAATWAKQRKCEKTERRQTKATER---- 60
           MEALW+LE+KWKL+TQ+A +LL C A AV+G CAAT  K+++  K +++Q    +R    
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKR--KAQKKQMVDRDRVADG 75

Query: 61  -----W------W------------WKGAADRRKVS-GGGETPVRLLGGEGED----FGS 120
                W      W            W GA    + S G  E P  LLG EG D    + S
Sbjct: 76  AVHAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRS 135

Query: 121 RNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 125
            NS + VWQRPILMGEKCE+ ++SGLILYDERG+LL
Sbjct: 136 HNSDSPVWQRPILMGEKCELPRFSGLILYDERGQLL 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L376_CUCSA8.4e-5377.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1[more]
A0A068UBX3_COFCA1.2e-2245.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1[more]
A0A061FGE7_THECC1.0e-2146.15Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=... [more]
B9N7S2_POPTR2.2e-2142.77Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1[more]
B9SZ20_RICCO6.5e-2140.83Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G14760.11.4e-1435.81 unknown protein[more]
AT1G49000.15.3e-0642.37 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778695623|ref|XP_011654026.1|4.0e-5677.18PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus][more]
gi|700199869|gb|KGN55027.1|1.2e-5277.70hypothetical protein Csa_4G622860 [Cucumis sativus][more]
gi|659131296|ref|XP_008465611.1|1.9e-5076.43PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo][more]
gi|661890563|emb|CDP06060.1|1.7e-2245.63unnamed protein product [Coffea canephora][more]
gi|590611129|ref|XP_007022014.1|1.4e-2146.15Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G006800.1CmaCh09G006800.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 1..128
score: 2.9
NoneNo IPR availablePANTHERPTHR33237:SF9GENOMIC DNA, CHROMOSOME 3, BAC CLONE: T21E2coord: 1..128
score: 2.9