Lsi04G019760 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G019760
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRibosomal RNA small subunit methyltransferase G, putative
Locationchr04 : 26790250 .. 26791727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAATAATAATATATAGCTCCGACTTGATCAGCATCCTCCCATGTCTTGAAAGCCATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGATTTTTTTTAATAGAAAAAAAAATCAATTTTAACCCAGTACCTTAAATAGTATTAAATCACCCATTAACCAAAATTAAAGCAATGGACGAATATAAATTTAATATTATAATAACAATCTAACAAATTGTGTTGCACATTCTAATCGTTCCTTGAGAAAAACTTCTCATATGCATTCAATTGTTAAAAAACATATTTAGTCATAAGATTTTAAAGAAAATGCCATCATAAATTTTTTAATGGGGAATTTAAAAAAAATAAGAAAAATTATTCACATAGAATAACAAAATTTTTAGATAGTTGTAATAGACGCGGATAGAAGCCTATCACTAATAGATAGTGATAGAAGTTTGTTAATGTCTATCAATATTTTTTTATGTCTATCAATATTTTTTTTGTTATTTTATGTAAATAGTTTGACATTTTTTCTATCTAGAAAAATCTCCCTTTTTTAGTCGTTGAAAATTATTTTAATTTTATTTTAATTATAATAGTTTCAAAAGAAAGTAATCACGACCTGTTATTATTCAACTTATGTAATTAAATTAATTATCATTTAAAAAGAAATGATGTCACTAAACTGATAATATACTTTAGAACACATTTAAATATTTAAAATGATAAGTTTTTCTAATAGAAAATTTTAAAAACTTCATTTCTATGGCGTTTAGGAGTGTTCACGGTTCAATTCGGTTCGGTCGAAGCCCAAACGTTGGTGTTTGTGTGTTTAGCTGTTTGCATTGTAATTTTCTTTTTGGCCTTAACATTACATGTTTTGATTAATAAAATGTAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGATGCTGTTCCTCTTCCATGGGAATCTTCAAAAAAGAGGTGTAAAAATTATACAAAGGGGTGAGCTTTTCCAATGTAATATCCCTTTCTTCTTTTGGTTAGATTCTCCAAATAAGCTTTCTTTCTCTCCATTTGTTACAAATTATCC

mRNA sequence

AATAATAATAATATATAGCTCCGACTTGATCAGCATCCTCCCATGTCTTGAAAGCCATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGATGCTGTTCCTCTTCCATGGGAATCTTCAAAAAAGAGGTGTAAAAATTATACAAAGGGGTGAGCTTTTCCAATGTAATATCCCTTTCTTCTTTTGGTTAGATTCTCCAAATAAGCTTTCTTTCTCTCCATTTGTTACAAATTATCC

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTAACGTGCACGGCGGCCGCCATTGTCGGGCTCTGCGCGGCGGCATGGGCAAAGAAAAGGAAGGGGGAGAAGAAAGAGCACCGACAACGGACGACGGTGACAGAGAGGTGGTGGAAATGGACGGCGGAAAGGCGGAAGGTGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCGGGGAAGGGGAAGGTGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGACTTATTCTGTACGACGAAAGGGGAAGATTGCTGCCGGATCAAATCGCCGCCATGGAAAATAGTTACAAGGAAGGAGAAGCCATAATAGTAAAGACAAGGTTGAAGGATCTACTCTGA

Protein sequence

MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL
Homology
[Close]
BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-66
Identity = 132/155 (85.16%), Postives = 138/155 (89.03%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQEQIAAMENGYKEGEVIKVKTRLKDLL 153

[Close]
BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-25
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAA-AWAKKRKGEKKEHRQRTTVTE--- 60
           MEALW+LE+KWKL+TQ+A +LL C A+A+VGLCAA    KKRK +KK+   R  V +   
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  --RWWK----WTAERRKVSGGG----------------ETPVRLLGGEGEGEELG--SRN 120
             +W +    W + +R   G                  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQI---AAMENSYKEGEAIIVKTRL 154
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL       +  E + +E     ++T L
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLLDHSAKGSSDQEETLQEETTGRIRTTL 195

[Close]
BLAST of Lsi04G019760 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-25
Identity = 80/188 (42.55%), Postives = 107/188 (56.91%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQR---TTVTER 60
           MEALWNLED+WKL+TQ+A +L  CTA A++ LCAA   K++   K+    +   T  ++R
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRSVNQDPSTGSSKR 60

Query: 61  WWK-------WTAERRKV----------------SGGGE-----TPVRLLGGEGEGEELG 120
           W +       W   RR +                SG G       P  +LG E     +G
Sbjct: 61  WSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSMG 120

Query: 121 --SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAA--MENSYKEGEAIIV 154
             S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +   EN ++E  A ++
Sbjct: 121 WQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTSSRKENIHEEKPAAVL 180

[Close]
BLAST of Lsi04G019760 vs. TrEMBL
Match: A0A0D2PI92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 78/182 (42.86%), Postives = 105/182 (57.69%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTE---- 60
           MEALW+LE+KWKL+TQ+A I+  C A+AIVGLCAA   KK K  KK+      V +    
Sbjct: 1   MEALWSLEEKWKLTTQEAVIVFVCAASAIVGLCAATVLKK-KARKKQVADGDAVGDGSMN 60

Query: 61  -RW------W----------KWTAERR---KVSGGGETPVRLLGGEGEGEELG--SRNST 120
            +W      W           W+  +R   +     E P  LLG E  G+ +G  S NS 
Sbjct: 61  AKWREPGCSWVPKKVLMGSVMWSGAKRWGERSFRWEERPPPLLGLEEYGDSVGWRSHNSD 120

Query: 121 AAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAI---IVKTRLKD 154
           + VWQRPILMGEKCE+ ++SGLILYDERG+LL D +  + +   + +     +V+T L+D
Sbjct: 121 SPVWQRPILMGEKCELPRFSGLILYDERGQLLDDSVKRLSDQANDNQGKSTGVVRTTLRD 180

[Close]
BLAST of Lsi04G019760 vs. TrEMBL
Match: V4TUY8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024060mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKK--------EHRQRT 60
           MEALWNLEDKWKL+T+++ +L  C A A+VGLC     +++  + K              
Sbjct: 1   MEALWNLEDKWKLTTRESLLLFVCAAVAVVGLCTVTILQRKAQKTKVVDVDDGPSKSVHV 60

Query: 61  TVTERWWKWTAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLK 120
            + E    W + +R +       VR  GG G      S NS + VWQRPILMGEKCE+ +
Sbjct: 61  KLGEPSCGWVSIKRMLMSS----VRWTGGVG----WQSHNSASPVWQRPILMGEKCELPR 120

Query: 121 YSGLILYDERGRLLPDQIAA---MENSYKEGEAIIVKTRLKDLL 154
           +SGLILYDERG+ L   + A    ++ ++E  A +V+T LKDLL
Sbjct: 121 FSGLILYDERGKPLHHSLKAASYKDDIHQEKSAAVVRTTLKDLL 156

[Close]
BLAST of Lsi04G019760 vs. TAIR10
Match: AT3G14760.1 (AT3G14760.1 unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-18
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKE-----------HR 60
           MEALW LE+K KL+T++A ++L  TAAA+  LC AA    R    K+             
Sbjct: 1   MEALWKLEEKLKLTTKEAVVILVGTAAAVTLLCIAAAFLNRNSRGKQVADAEWASETAFG 60

Query: 61  QRTTVTERWWKWTAERRKVSGG--GETPVRLLGGEGEGE------ELGSRNSTAAVWQRP 120
            RT   +R  KW+  +R + G     +  + +  E   +      +  S N+   VWQRP
Sbjct: 61  SRTMEEKRKCKWSKVKRTLMGSFCWSSAAKWMEMETRRQPPLLAVKERSLNAVDPVWQRP 120

Query: 121 ILMGEKCEMLKYSGLILYDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           ILMGEKCE+ ++SGLILYDE G   P     ++   K+    +V+T L+DLL
Sbjct: 121 ILMGEKCELPRFSGLILYDECGH--PRHHPQLQEKVKQSS--VVRTTLRDLL 168

[Close]
BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 132/155 (85.16%), Postives = 138/155 (89.03%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL +QIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQEQIAAMENGYKEGEVIKVKTRLKDLL 153

[Close]
BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo])

HSP 1 Score: 256.1 bits (653), Expect = 3.8e-65
Identity = 130/155 (83.87%), Postives = 136/155 (87.74%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++ LCAAAWA+KRKGEKK HR+RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEKKAHRRRT--DQRWWK 60

Query: 61  WTAERR--KVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W AE R     GGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WAAEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYKEGEAIIVKTRLKDLL 154
           YDERGRLL DQIAAMEN YKEGE I VKTRLKDLL
Sbjct: 121 YDERGRLLQDQIAAMENGYKEGEGIKVKTRLKDLL 153

[Close]
BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 8.1e-60
Identity = 119/140 (85.00%), Postives = 125/140 (89.29%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTERWWK 60
           MEALWNLEDKWKLSTQQAF+LLTCT AA++GLCAAAWAKKRKGEKK H +RT   +RWWK
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEKKAHPRRT--DQRWWK 60

Query: 61  W--TAERRKVSGGGETPVRLLGGEGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120
           W  T  RRK SGGGETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL
Sbjct: 61  WPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLIL 120

Query: 121 YDERGRLLPDQIAAMENSYK 139
           YDERGRLL +QIAAMEN YK
Sbjct: 121 YDERGRLLQEQIAAMENGYK 138

[Close]
BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|743925357|ref|XP_011006814.1| (PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica])

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 81/187 (43.32%), Postives = 105/187 (56.15%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAAAWAKKRKGEKKEHRQRTTVTE---- 60
           MEALWNLED+WKL+TQ+A +L  CTA A++ LCAA   K++   K+    +   T+    
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRAVNQDPSTDFSIR 60

Query: 61  ----------------------RWW---KWTAERRKVSGGGET-PVRLLGGEGEGEELG- 120
                                 RW    KW  ERR  SG G   P  +LG E     +G 
Sbjct: 61  RSEPEPGSNNWITIRRVLMESMRWSGASKWD-ERRSGSGSGMLLPPPVLGSERCESSMGW 120

Query: 121 -SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQIAA--MENSYKEGEAIIVK 154
            S  S +AVWQRPILMGEKCE+ +YSG+ILYDERGRLL   + +   EN ++E  A +++
Sbjct: 121 QSPESLSAVWQRPILMGEKCELPRYSGVILYDERGRLLDHSLTSSRKENIHEEKPAAVLR 180

[Close]
BLAST of Lsi04G019760 vs. NCBI nr
Match: gi|590611129|ref|XP_007022014.1| (Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 1 

Query: 1   MEALWNLEDKWKLSTQQAFILLTCTAAAIVGLCAA-AWAKKRKGEKKEHRQRTTVTE--- 60
           MEALW+LE+KWKL+TQ+A +LL C A+A+VGLCAA    KKRK +KK+   R  V +   
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  --RWWK----WTAERRKVSGGG----------------ETPVRLLGGEGEGEELG--SRN 120
             +W +    W + +R   G                  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLLPDQI---AAMENSYKEGEAIIVKTRL 154
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL       +  E + +E     ++T L
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLLDHSAKGSSDQEETLQEETTGRIRTTL 195

The following BLAST results are available for this feature:
BLAST of Lsi04G019760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G019760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L376_CUCSA1.1e-6685.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1[more]
A0A061FGE7_THECC2.7e-2543.48Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=... [more]
B9N7S2_POPTR4.5e-2542.55Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1[more]
A0A0D2PI92_GOSRA1.0e-2442.86Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1[more]
V4TUY8_9ROSI1.6e-2241.46Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024060mg PE=4 SV=1[more]
BLAST of Lsi04G019760 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14760.16.3e-1836.63 unknown protein[more]
BLAST of Lsi04G019760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199869|gb|KGN55027.1|1.5e-6685.16hypothetical protein Csa_4G622860 [Cucumis sativus][more]
gi|659131296|ref|XP_008465611.1|3.8e-6583.87PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo][more]
gi|778695623|ref|XP_011654026.1|8.1e-6085.00PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus][more]
gi|743925357|ref|XP_011006814.1|1.0e-2543.32PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica][more]
gi|590611129|ref|XP_007022014.1|3.8e-2543.48Ribosomal RNA small subunit methyltransferase G, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G019760.1Lsi04G019760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33237FAMILY NOT NAMEDcoord: 1..126
score: 3.2
NoneNo IPR availablePANTHERPTHR33237:SF9GENOMIC DNA, CHROMOSOME 3, BAC CLONE: T21E2coord: 1..126
score: 3.2