Cla023304 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023304
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 19411765 .. 19412298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTTACGTGCACGGCGGTCGCGGTTGTTGGGTTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAGGGAGAGAAGGGAGAGAAGAAAGAGCGCCGAAGGACGACGGCAACGGAGAAGTGGTGGAAATGGGCGGCAGAAAGGCGGAAGGGGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCAGAGAAGGGGAAGGGGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGACGATTGCTGCAGGAGCAAATCGCCGCCATGGAAAATGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGATTTTTTTAATAGGGAAAAAAAAAAAAAAAAAGCGTTCAATGATTAAAAACATATTTACTCATACGACTTTAAAGAAAATGACATTATAA

mRNA sequence

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTTACGTGCACGGCGGTCGCGGTTGTTGGGTTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAGGGAGAGAAGGGAGAGAAGAAAGAGCGCCGAAGGACGACGGCAACGGAGAAGTGGTGGAAATGGGCGGCAGAAAGGCGGAAGGGGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCAGAGAAGGGGAAGGGGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGACGATTGCTGCAGGAGCAAATCGCCGCCATGGAAAATGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGATTTTTTTAATAGGGAAAAAAAAAAAAAAAAAGCGTTCAATGATTAAAAACATATTTACTCATACGACTTTAAAGAAAATGACATTATAA

Coding sequence (CDS)

ATGGAAGCTCTGTGGAATTTAGAAGACAAATGGAAGCTCTCAACCCAACAAGCTTTCATTCTCTTTACGTGCACGGCGGTCGCGGTTGTTGGGTTCTGCGCGGCGGCGTGGGCGAAGAAGAGGAAGGGAGAGAAGGGAGAGAAGAAAGAGCGCCGAAGGACGACGGCAACGGAGAAGTGGTGGAAATGGGCGGCAGAAAGGCGGAAGGGGAGCGGCGGCGGAGAGACGCCGGTGCGGCTGTTGGGCAGAGAAGGGGAAGGGGAAGAATTGGGAAGCCGGAATTCGACGGCGGCGGTGTGGCAACGGCCGATATTAATGGGGGAAAAGTGTGAGATGCTGAAATACAGTGGGCTTATTCTGTACGACGAAAGGGGACGATTGCTGCAGGAGCAAATCGCCGCCATGGAAAATGGTTACAAGGTGCTGCTTCGTAAGTTCTTTCGGATTTTTTTAATAGGGAAAAAAAAAAAAAAAAAGCGTTCAATGATTAAAAACATATTTACTCATACGACTTTAAAGAAAATGACATTATAA

Protein sequence

MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKWWKWAAERRKGSGGGETPVRLLGREGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQEQIAAMENGYKVLLRKFFRIFLIGKKKKKKRSMIKNIFTHTTLKKMTL

Homology

[Close]

BLAST of Cla023304 vs. TrEMBL
Match: A0A0A0L376_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.9e-61
Identity = 121/142 (85.21%), Postives = 125/142 (88.03%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLEDKWKLSTQQAF+L TCT  AV+G CAAAWAKKRKGEK  K   RRT   ++W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK--KAHPRRTD--QRW 60

Query: 61  WKWAA--ERRKGSGGGETPVRLLGREGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120
           WKW A   RRKGSGGGETPVRLLGRE EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL
Sbjct: 61  WKWPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120

Query: 121 ILYDERGRLLQEQIAAMENGYK 141
           ILYDERGRLLQEQIAAMENGYK
Sbjct: 121 ILYDERGRLLQEQIAAMENGYK 138

[Close]

BLAST of Cla023304 vs. TrEMBL
Match: B9N7S2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-25
Identity = 72/165 (43.64%), Postives = 91/165 (55.15%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLED+WKL+TQ+A +LF CTA+AV+  CAA   K++   K     +  +T + K 
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRSVNQDPSTGSSKR 60

Query: 61  WK--------WAAERR------------------KGSGGGE---TPVRLLGREGEGEELG 120
           W         W   RR                   GSG G     P  +LG E     +G
Sbjct: 61  WSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSMG 120

Query: 121 --SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQEQIAA 135
             S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +
Sbjct: 121 WQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTS 165

[Close]

BLAST of Cla023304 vs. TrEMBL
Match: A0A0D2PI92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-24
Identity = 70/160 (43.75%), Postives = 92/160 (57.50%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKK--RKGEKGEKKERRRTTATE 60
           MEALW+LE+KWKL+TQ+A I+F C A A+VG CAA   KK  RK +  +       +   
Sbjct: 1   MEALWSLEEKWKLTTQEAVIVFVCAASAIVGLCAATVLKKKARKKQVADGDAVGDGSMNA 60

Query: 61  KW------W----------KWAAERRKGSGG---GETPVRLLGREGEGEELG--SRNSTA 120
           KW      W           W+  +R G       E P  LLG E  G+ +G  S NS +
Sbjct: 61  KWREPGCSWVPKKVLMGSVMWSGAKRWGERSFRWEERPPPLLGLEEYGDSVGWRSHNSDS 120

Query: 121 AVWQRPILMGEKCEMLKYSGLILYDERGRLLQEQIAAMEN 138
            VWQRPILMGEKCE+ ++SGLILYDERG+LL + +  + +
Sbjct: 121 PVWQRPILMGEKCELPRFSGLILYDERGQLLDDSVKRLSD 160

[Close]

BLAST of Cla023304 vs. TrEMBL
Match: A0A061FGE7_THECC (Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=TCM_032143 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.8e-24
Identity = 73/154 (47.40%), Postives = 88/154 (57.14%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAA-WAKKRKGEKGEKKERRRTT---A 60
           MEALW+LE+KWKL+TQ+A +L  C A AVVG CAA    KKRK +K +  +R R      
Sbjct: 16  MEALWDLEEKWKLTTQEAVLLLACAASAVVGLCAATVLKKKRKAQKKQMVDRDRVADGAV 75

Query: 61  TEKWWK-----------------WAAERRKGS---GGGETPVRLLGREGEGEELG--SRN 120
             KW +                 W+   R G    G  E P  LLG EG     G  S N
Sbjct: 76  HAKWCEPSCNWVSAKRVFMGSAMWSGANRWGERSFGWEERPPPLLGLEGYDSCAGWRSHN 135

Query: 121 STAAVWQRPILMGEKCEMLKYSGLILYDERGRLL 129
           S + VWQRPILMGEKCE+ ++SGLILYDERG+LL
Sbjct: 136 SDSPVWQRPILMGEKCELPRFSGLILYDERGQLL 169

[Close]

BLAST of Cla023304 vs. TrEMBL
Match: A0A068UBX3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.8e-23
Identity = 71/162 (43.83%), Postives = 90/162 (55.56%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKG-------------E 60
           MEALW LEDKWKLSTQ+A   F CTA  V+G C A + K+R    G             +
Sbjct: 1   MEALWKLEDKWKLSTQEAVAFFACTAFLVIGVCFATFLKRRAKRSGLVHQEPCMNTEATD 60

Query: 61  KKERRRTTATEKW------------WKWAA--ERRKGSGGGE---TPVRLLGREGEGEEL 120
           + +R      +KW            W  A+  E R+ SG       P+ ++G E   E L
Sbjct: 61  EAKRSDQKQIKKWGAVKELLMGSVRWSGASKLEERRLSGSQRERAAPLLVVGGEKCEENL 120

Query: 121 G--SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQE 131
           G  S NS++AVWQRPILMGEKCE+ ++SGLILYDERGR L +
Sbjct: 121 GRLSHNSSSAVWQRPILMGEKCELPRFSGLILYDERGRPLDQ 162

[Close]

BLAST of Cla023304 vs. NCBI nr
Match: gi|778695623|ref|XP_011654026.1| (PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.7e-64
Identity = 128/152 (84.21%), Postives = 132/152 (86.84%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLEDKWKLSTQQAF+L TCT  AV+G CAAAWAKKRKGEK  K   RRT   ++W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK--KAHPRRTD--QRW 60

Query: 61  WKWAA--ERRKGSGGGETPVRLLGREGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120
           WKW A   RRKGSGGGETPVRLLGRE EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL
Sbjct: 61  WKWPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120

Query: 121 ILYDERGRLLQEQIAAMENGYKVLLRKFFRIF 151
           ILYDERGRLLQEQIAAMENGYKVLLRK F  F
Sbjct: 121 ILYDERGRLLQEQIAAMENGYKVLLRKLFGRF 148

[Close]

BLAST of Cla023304 vs. NCBI nr
Match: gi|700199869|gb|KGN55027.1| (hypothetical protein Csa_4G622860 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 8.5e-61
Identity = 121/142 (85.21%), Postives = 125/142 (88.03%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLEDKWKLSTQQAF+L TCT  AV+G CAAAWAKKRKGEK  K   RRT   ++W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTVAAVIGLCAAAWAKKRKGEK--KAHPRRTD--QRW 60

Query: 61  WKWAA--ERRKGSGGGETPVRLLGREGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120
           WKW A   RRKGSGGGETPVRLLGRE EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL
Sbjct: 61  WKWPATESRRKGSGGGETPVRLLGREEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120

Query: 121 ILYDERGRLLQEQIAAMENGYK 141
           ILYDERGRLLQEQIAAMENGYK
Sbjct: 121 ILYDERGRLLQEQIAAMENGYK 138

[Close]

BLAST of Cla023304 vs. NCBI nr
Match: gi|659131296|ref|XP_008465611.1| (PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.8e-58
Identity = 119/142 (83.80%), Postives = 125/142 (88.03%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLEDKWKLSTQQAF+L TCT  AV+  CAAAWA+KRKGEK  K  RRRT   ++W
Sbjct: 1   MEALWNLEDKWKLSTQQAFVLLTCTLAAVIALCAAAWARKRKGEK--KAHRRRTD--QRW 60

Query: 61  WKWAAERR-KGSGGG-ETPVRLLGREGEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120
           WKWAAE R KGSGGG ETPVRLLG E EGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL
Sbjct: 61  WKWAAEIRWKGSGGGGETPVRLLGEEEEGEELGSRNSTAAVWQRPILMGEKCEMLKYSGL 120

Query: 121 ILYDERGRLLQEQIAAMENGYK 141
           ILYDERGRLLQ+QIAAMENGYK
Sbjct: 121 ILYDERGRLLQDQIAAMENGYK 138

[Close]

BLAST of Cla023304 vs. NCBI nr
Match: gi|566194776|ref|XP_006377711.1| (hypothetical protein POPTR_0011s10460g [Populus trichocarpa])

HSP 1 Score: 122.9 bits (307), Expect = 5.8e-25
Identity = 72/165 (43.64%), Postives = 91/165 (55.15%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTTATEKW 60
           MEALWNLED+WKL+TQ+A +LF CTA+AV+  CAA   K++   K     +  +T + K 
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRSVNQDPSTGSSKR 60

Query: 61  WK--------WAAERR------------------KGSGGGE---TPVRLLGREGEGEELG 120
           W         W   RR                   GSG G     P  +LG E     +G
Sbjct: 61  WSEPEPGSNNWITIRRVLMESMRWSGASKWDEGSSGSGSGSGMLLPPPVLGLERCESSMG 120

Query: 121 --SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQEQIAA 135
             S +S +AVWQRPILMGEKCE+ +YSGLILYDERGRLL   + +
Sbjct: 121 WQSPDSLSAVWQRPILMGEKCELPRYSGLILYDERGRLLDHSLTS 165

[Close]

BLAST of Cla023304 vs. NCBI nr
Match: gi|743925357|ref|XP_011006814.1| (PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 72/163 (44.17%), Postives = 92/163 (56.44%), Query Frame = 1


Query: 1   MEALWNLEDKWKLSTQQAFILFTCTAVAVVGFCAAAWAKKRKGEKGEKKERRRTT----- 60
           MEALWNLED+WKL+TQ+A +LF CTA+AV+  CAA   K++   K     +  +T     
Sbjct: 1   MEALWNLEDEWKLTTQEAVLLFVCTALAVIALCAAIMLKRKAQTKQRAVNQDPSTDFSIR 60

Query: 61  ------ATEKW------------WKWAA---ERRKGSGGGET-PVRLLGREGEGEELG-- 120
                  +  W            W  A+   ERR GSG G   P  +LG E     +G  
Sbjct: 61  RSEPEPGSNNWITIRRVLMESMRWSGASKWDERRSGSGSGMLLPPPVLGSERCESSMGWQ 120

Query: 121 SRNSTAAVWQRPILMGEKCEMLKYSGLILYDERGRLLQEQIAA 135
           S  S +AVWQRPILMGEKCE+ +YSG+ILYDERGRLL   + +
Sbjct: 121 SPESLSAVWQRPILMGEKCELPRYSGVILYDERGRLLDHSLTS 163

The following BLAST results are available for this feature:

BLAST of Cla023304 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L376_CUCSA	5.9e-61	85.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622860 PE=4 SV=1	[more]
B9N7S2_POPTR	4.0e-25	43.64	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10460g PE=4 SV=1	[more]
A0A0D2PI92_GOSRA	4.4e-24	43.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G332200 PE=4 SV=1	[more]
A0A061FGE7_THECC	5.8e-24	47.40	Ribosomal RNA small subunit methyltransferase G, putative OS=Theobroma cacao GN=...	[more]
A0A068UBX3_COFCA	3.8e-23	43.83	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021414001 PE=4 SV=1	[more]

BLAST of Cla023304 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695623\|ref\|XP_011654026.1\|	3.7e-64	84.21	PREDICTED: uncharacterized protein LOC105435286 [Cucumis sativus]	[more]
gi\|700199869\|gb\|KGN55027.1\|	8.5e-61	85.21	hypothetical protein Csa_4G622860 [Cucumis sativus]	[more]
gi\|659131296\|ref\|XP_008465611.1\|	1.8e-58	83.80	PREDICTED: uncharacterized protein LOC103503252 [Cucumis melo]	[more]
gi\|566194776\|ref\|XP_006377711.1\|	5.8e-25	43.64	hypothetical protein POPTR_0011s10460g [Populus trichocarpa]	[more]
gi\|743925357\|ref\|XP_011006814.1\|	2.2e-24	44.17	PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023304	Cla023304.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	FAMILY NOT NAMED	coord: 1..132 score: 1.2
None	No IPR available	PANTHER	PTHR33237:SF9	GENOMIC DNA, CHROMOSOME 3, BAC CLONE: T21E2	coord: 1..132 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023304	Csa4G622860	Cucumber (Chinese Long) v2	cuwmB349
Cla023304	ClCG11G017140	Watermelon (Charleston Gray)	wcgwmB103
Cla023304	CSPI04G22480	Wild cucumber (PI 183967)	cpiwmB356
Cla023304	CmaCh09G006800	Cucurbita maxima (Rimu)	cmawmB038
Cla023304	CmoCh09G006600	Cucurbita moschata (Rifu)	cmowmB030
Cla023304	Lsi04G019760	Bottle gourd (USVL1VR-Ls)	lsiwmB333
Cla023304	Cp4.1LG06g05280	Cucurbita pepo (Zucchini)	cpewmB776
Cla023304	CsGy4G020990	Cucumber (Gy14) v2	cgybwmB326
Cla023304	Carg03082	Silver-seed gourd	carwmB0635
Cla023304	CsaV3_4G032800	Cucumber (Chinese Long) v3	cucwmB367
Cla023304	Bhi09G002912	Wax gourd	wgowmB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla023304	Watermelon (97103) v2	wmwmbB358
Cla023304	Cucumber (Gy14) v1	cgywmB047
Cla023304	Cucurbita maxima (Rimu)	cmawmB463
Cla023304	Cucurbita moschata (Rifu)	cmowmB457
Cla023304	Melon (DHL92) v3.5.1	mewmB539
Cla023304	Cucurbita pepo (Zucchini)	cpewmB581
Cla023304	Melon (DHL92) v3.6.1	medwmB524
Cla023304	Silver-seed gourd	carwmB0304