Cp4.1LG06g01220 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone deacetylase complex subunit SAP30
LocationCp4.1LG06 : 620433 .. 623134 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAGGCGGGAGGAAGAAGGAGAATAATAGTAAAGATGATTTTTGGGAAAGAATTGGAGAGAGTGATCTGATTACACGTGGCGGCTTGTAATTAGTTGCTTTAAAGACGTTGGGATTCGTAGCAATACACACCAATGAACAATTCAAGTCACTCTCATTTCTCTCTCTCAAATAAAGCACACATTCTCTCTCTACTCTATCTCTCTCTTACTCTGCTATGTGTTTGTTGTCGACGAAAATTCCCAAATTTCTCTGCGATTTCGCTGTCTTTTGCTGCTGAAATTCCCGAAAACATGCTCGAAACTCCTTGATCTTTCTGCATCGTCTAATTTCCAAGCTCTGTTTCTATTGAATTTTCCCCTGTTTTCTCGAATTGATTGCCGAAGGATTCGGGAATGCTTGAAGCAGTGGAGAGCTCCGTCAATGGCGGCTTCTCGCAGTTGCAGACCAGTGGCGATAGTAGTGAAGAGGAGCTTTCTGTTCTCCCTCGTCATACGAAAGTTGTCGTCACTGGTAACAACCGCACCAAATCGGTGCTCGTCGGACTTCAAGGCGTTGTTAAAAAGGCTGTTGGTTTGGGCGGATGGCATTGGCTGGTATGTCACTTTGTTTAATTGACCTGTTTGTGTAAGTGAGACTAGGGCACAATGAGTCTGGATTGAATCAATTTCGAGTGTCAATGCTGTTTTCCCCAATTCACAATTTTGTTTAATCGGGGTTTTTTAATCAATTTTGTCGTTGTGGTTTCCAGCTATTATTGTATGTTCACTCTGTTTATTACATCCATTTACGAGTTTTGAATCTACTATGGAAAGAGAATCGGTTTTATGCTTTGATTTTGGGCTTTGAGCTATGAATTGCATGTTCAATTTGACCTATGGATCTGGTGATTGGAGATGGGGTTTTCATTAACAATGTAAAATCCATTTATTGCAATATTGGATTTTTTTTTATTGAATTTCGATTTCATAATTTCACGAATCTCCCCAGATTATTGTTCTGTTTCCTTCAGATATTCTTCCTAAGAATTTTGAAGTTTGTTTCCATGTTTATCCAGCTGTCGCATTGATGTTAGAACAGTGGGATTGTTCTTTTGAAATCTGCAGGTCACTAGATTTTGGGTACATTCTAGATTTAGCGTTTAATTTCGAAATTAAAAAATCCTCAGGTTCTCACGAACGGCATTGAAGTTAAGCTACAGAGAAATGCCCTCAGTGTAATCGGAGCTCCGACTGGCAACGAGGACGATGATGATTTCGAATTTGAAAACGTACACTGGAATGGATCCGATATGGGTAACTTCAGAATCTTTCCTATTCTTGTTCACTGATTGAATACACAACAATTGATTGTCGATTCTTCAAATGGATTAGATTAGTGAATATTGTAAGCTGGCATCAATTAAACATAGTAAAAAGGCCCCAAAAAAAGCTTATTGTCTCCACTTTTGTTTGATTCTGATTAGGGTATTCATAATTAAAACGCTTGCTTGTTTTGGGTAATTGTTTCATTGGTCCTCTGTAGTTGTTGTGGAATGATATGCGTTCTAGGAATAGTGGTTTGAGGTTGGTACTTAGGATTCTTTGCTCATTCACCTTTTACTTTATTTGAAACCTTGTTGTGTCTTTGATTCCTTCTCTTCTGGCCCCTCCCCATGCTTTACTTTTTTCATAATGCTTTTGGTATTCTGATTTCCCAGCATCTGATGACACTCTAAAGTCCCATAGACCAAGACATCGGACGCACAAATCATCGGGATCGTCACACAAAACCATCGGCCGATCCTTCTCTTATGAATCACAGTCCAAAGGATCTATTTCCACCCCTCGTGGGTCCATGGTACTTAAGAAACTGATCATTTTTTGAATGAAATGATACTACGCTTGTAATTTAAGTTGGGTTTTGATTAATGATGTTACCTGTACAGAAAGTTGACCTTGGTAAACTTGAGATGTCTGCCCTATGGAGATATTGGCGACACTTCAATCTTGTAAGTTACCGCTACTTTGGTATAAGTGTGTGATGGTTTGGTTAAGCTGCATGTTTCTACCACCATGATTGAGAGAATTCCATGTGTTCTAGGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGCTGGTGGATGTTGTTCAAAGGCATTTCATGTCACAGGTACTTAATTTTCTTGGTCTAACCGTTAATTGTTGCGTAGTACGTCCCATAACATGTTCGTTTGTTCACAATGCTTGTGCAGCAAATCGACGAGTTACAGGTGATTGTCGGGTTTGTCCACGCTGCAAAGAGACTCAAAACCATCTGCAAATGATGAGTAAAGGCTGTAACACCAAGCTTATTCCACCATTTCTAACTCAAGAAACAGCAGTACCCGAAATTCCCACTTCCCCGCTGCATTAATGGTTCTCTGTAATATAAGTATCTTGGCTTGTTATCGAGGTATCGTTACCCTTTTGTTAGTGTAATTATGGTAGATGAATATAGTAATTATATAATGTATGTATGACTGGCAAACAGACCTACGAAAACTAAGAAGTCCTTGCAGACTTCATTTTCCTAAGCCTCGATGGATTGAATGCTGACTTGGGAGACCGGGTATCTTGAAATGAATGTGTATATTCTTTTAATGCTTTATCTTTGTTTCTTGACATCTCGATTATACCAATGAATCAATGTCTAACCGCAGTCTTTATTCTTGGCTTCTGTT

mRNA sequence

TGAAAGGCGGGAGGAAGAAGGAGAATAATAGTAAAGATGATTTTTGGGAAAGAATTGGAGAGAGTGATCTGATTACACGTGGCGGCTTGTAATTAGTTGCTTTAAAGACGTTGGGATTCGTAGCAATACACACCAATGAACAATTCAAGTCACTCTCATTTCTCTCTCTCAAATAAAGCACACATTCTCTCTCTACTCTATCTCTCTCTTACTCTGCTATGTGTTTGTTGTCGACGAAAATTCCCAAATTTCTCTGCGATTTCGCTGTCTTTTGCTGCTGAAATTCCCGAAAACATGCTCGAAACTCCTTGATCTTTCTGCATCGTCTAATTTCCAAGCTCTGTTTCTATTGAATTTTCCCCTGTTTTCTCGAATTGATTGCCGAAGGATTCGGGAATGCTTGAAGCAGTGGAGAGCTCCGTCAATGGCGGCTTCTCGCAGTTGCAGACCAGTGGCGATAGTAGTGAAGAGGAGCTTTCTGTTCTCCCTCGTCATACGAAAGTTGTCGTCACTGGTAACAACCGCACCAAATCGGTGCTCGTCGGACTTCAAGGCGTTGTTAAAAAGGCTGTTGGTTTGGGCGGATGGCATTGGCTGGTTCTCACGAACGGCATTGAAGTTAAGCTACAGAGAAATGCCCTCAGTGTAATCGGAGCTCCGACTGGCAACGAGGACGATGATGATTTCGAATTTGAAAACGTACACTGGAATGGATCCGATATGGCATCTGATGACACTCTAAAGTCCCATAGACCAAGACATCGGACGCACAAATCATCGGGATCGTCACACAAAACCATCGGCCGATCCTTCTCTTATGAATCACAGTCCAAAGGATCTATTTCCACCCCTCGTGGGTCCATGAAAGTTGACCTTGGTAAACTTGAGATGTCTGCCCTATGGAGATATTGGCGACACTTCAATCTTGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGCTGGTGGATGTTGTTCAAAGGCATTTCATGTCACAGCAAATCGACGAGTTACAGGTGATTGTCGGGTTTGTCCACGCTGCAAAGAGACTCAAAACCATCTGCAAATGATGAGTAAAGGCTGTAACACCAAGCTTATTCCACCATTTCTAACTCAAGAAACAGCAGTACCCGAAATTCCCACTTCCCCGCTGCATTAATGGTTCTCTGTAATATAAGTATCTTGGCTTGTTATCGAGGTATCGTTACCCTTTTGTTAGTGTAATTATGGTAGATGAATATAGTAATTATATAATGTATGTATGACTGGCAAACAGACCTACGAAAACTAAGAAGTCCTTGCAGACTTCATTTTCCTAAGCCTCGATGGATTGAATGCTGACTTGGGAGACCGGGTATCTTGAAATGAATGTGTATATTCTTTTAATGCTTTATCTTTGTTTCTTGACATCTCGATTATACCAATGAATCAATGTCTAACCGCAGTCTTTATTCTTGGCTTCTGTT

Coding sequence (CDS)

ATGCTTGAAGCAGTGGAGAGCTCCGTCAATGGCGGCTTCTCGCAGTTGCAGACCAGTGGCGATAGTAGTGAAGAGGAGCTTTCTGTTCTCCCTCGTCATACGAAAGTTGTCGTCACTGGTAACAACCGCACCAAATCGGTGCTCGTCGGACTTCAAGGCGTTGTTAAAAAGGCTGTTGGTTTGGGCGGATGGCATTGGCTGGTTCTCACGAACGGCATTGAAGTTAAGCTACAGAGAAATGCCCTCAGTGTAATCGGAGCTCCGACTGGCAACGAGGACGATGATGATTTCGAATTTGAAAACGTACACTGGAATGGATCCGATATGGCATCTGATGACACTCTAAAGTCCCATAGACCAAGACATCGGACGCACAAATCATCGGGATCGTCACACAAAACCATCGGCCGATCCTTCTCTTATGAATCACAGTCCAAAGGATCTATTTCCACCCCTCGTGGGTCCATGAAAGTTGACCTTGGTAAACTTGAGATGTCTGCCCTATGGAGATATTGGCGACACTTCAATCTTGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGCTGGTGGATGTTGTTCAAAGGCATTTCATGTCACAGCAAATCGACGAGTTACAGGTGATTGTCGGGTTTGTCCACGCTGCAAAGAGACTCAAAACCATCTGCAAATGA

Protein sequence

MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRPRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK
Homology
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BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match: A0A0A0LDS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855270 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.9e-112
Identity = 211/224 (94.20%), Postives = 215/224 (95.98%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L +SGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNEDDDD EFEN+HWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R RTHKSSGSS KTI RSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRTHKSSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLK-TICK 224
           FPNPSKEQLVDVVQRHFMSQQ+DELQVIVGFVHAAKRLK T+CK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTTVCK 224

[Close]
BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match: A0A0B0N115_GOSAR (Histone deacetylase complex subunit SAP30 OS=Gossypium arboreum GN=F383_33863 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 5.8e-106
Identity = 198/224 (88.39%), Postives = 210/224 (93.75%), Query Frame = 1 

Query: 1   MLEAVESSVNGG-FSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60
           MLEA+ESSVNGG FSQ Q+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MLEAMESSVNGGGFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 61  GLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHR 120
           GLGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD EFEN+ WNGSDMASDDT KSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHR 120

Query: 121 PRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVD 180
            RHRTHKS+GSSHKT+ RSFS +SQSKGS+STPRGS KVDL KLEM+ALWRYWRHFNLVD
Sbjct: 121 SRHRTHKSTGSSHKTMSRSFSCDSQSKGSVSTPRGSTKVDLSKLEMAALWRYWRHFNLVD 180

Query: 181 AFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           A PNPSKEQLVDVVQRHF+SQQ+DELQVIVGFV AAKRLKT+CK
Sbjct: 181 AIPNPSKEQLVDVVQRHFVSQQMDELQVIVGFVQAAKRLKTVCK 224

[Close]
BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match: A0A0D2NAL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G106500 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 7.6e-106
Identity = 198/224 (88.39%), Postives = 210/224 (93.75%), Query Frame = 1 

Query: 1   MLEAVESSVNGG-FSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60
           MLEA+ESSVNGG FSQ Q+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MLEAMESSVNGGGFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 61  GLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHR 120
           GLGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD EFEN+ WNGSDMASDDT KSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTHKSHR 120

Query: 121 PRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVD 180
            RHRTHKS+GSSHKT+ RSFS +SQSKGS+STPRGS KVDL KLEM+ALWRYWRHFNLVD
Sbjct: 121 SRHRTHKSTGSSHKTMSRSFSCDSQSKGSVSTPRGSTKVDLSKLEMAALWRYWRHFNLVD 180

Query: 181 AFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           A PNPSKEQLVDVVQRHF+SQQ+DELQVIVGFV AAKRLKT+CK
Sbjct: 181 AIPNPSKEQLVDVVQRHFVSQQMDELQVIVGFVQAAKRLKTVCK 224

[Close]
BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match: E0CQ00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11970 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.7e-105
Identity = 197/223 (88.34%), Postives = 208/223 (93.27%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGGFSQLQ+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD EFEN+ WNGSDMASDDT KSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHRS 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RHRTHKSSGSSHKT+ RS S +SQSKGSISTPRGS KVDL KLEM+ALWRY RHFNLVD 
Sbjct: 121 RHRTHKSSGSSHKTMSRSLSCDSQSKGSISTPRGSTKVDLSKLEMAALWRYLRHFNLVDG 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
            PNPSKEQL+DVVQRHF++QQ+DELQVIVGFV AAKRLKT+CK
Sbjct: 181 IPNPSKEQLIDVVQRHFVTQQMDELQVIVGFVQAAKRLKTVCK 223

[Close]
BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match: W9RT50_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021213 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.2e-105
Identity = 198/223 (88.79%), Postives = 208/223 (93.27%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGGFSQLQ+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD +FEN+ WNGSDMASDDT KSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLDFENMQWNGSDMASDDTQKSHRS 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RHR HKSSGSSHKT+ RS S +SQSKGSISTPRG MKVDL KLEM+ALWRY RHFNLVDA
Sbjct: 121 RHRVHKSSGSSHKTMCRSLSCDSQSKGSISTPRGPMKVDLSKLEMTALWRYLRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
            PNPSKEQLVDVVQRHFMSQQIDELQVI+GFV +AKRLKT+CK
Sbjct: 181 IPNPSKEQLVDVVQRHFMSQQIDELQVIMGFVQSAKRLKTVCK 223

[Close]
BLAST of Cp4.1LG06g01220 vs. TAIR10
Match: AT1G19330.3 (AT1G19330.3 unknown protein)

HSP 1 Score: 317.8 bits (813), Expect = 5.4e-87
Identity = 176/233 (75.54%), Postives = 193/233 (82.83%), Query Frame = 1 

Query: 1   MLEAVESS--VNGGFSQLQTS-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60
           MLEAV+SS  VNGGF Q+Q+  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK
Sbjct: 1   MLEAVDSSGVVNGGFPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60

Query: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDM-----AS 120
           KAVGLGGWHWLVLTNGIEVKLQRNALSV+  PTGNE+DDD +FEN   NGSDM     AS
Sbjct: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSFPAS 120

Query: 121 DDTLKSHRPRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSM-KVDLGKLEMSALWR 180
           +DTLK H+ + R  +SS SSHKT+ RS S +SQSK S  TP  +M KVDL KLEM AL  
Sbjct: 121 EDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPALLN 180

Query: 181 YWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIVGFV AAKR+K  CK
Sbjct: 181 YWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 233

[Close]
BLAST of Cp4.1LG06g01220 vs. TAIR10
Match: AT1G75060.1 (AT1G75060.1 unknown protein)

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-78
Identity = 156/217 (71.89%), Postives = 179/217 (82.49%), Query Frame = 1 

Query: 11  GGFSQLQTS-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 70
           GGFSQLQ+  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV
Sbjct: 17  GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query: 71  LTNGIEVKLQRNALSVIGAPTGNEDDDDFEFEN-VHWNG-SDMASDDTLKSHRPRHRTHK 130
           LTNGIEVKLQRNALSV+  PTGNE+D+D E ++   WN  SDM ++DTLK H+ + R H+
Sbjct: 77  LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query: 131 SSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSK 190
           SS  S K + R  S +S SK S  TPR +MKVDL KL+M+AL RYWRHFNLVDA PNP+K
Sbjct: 137 SSRLSQKALYREVSCDSHSKISSITPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPTK 196

Query: 191 EQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           EQL+D++QRHFMSQQ+DELQVIVGFV AA  +K  C+
Sbjct: 197 EQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233

[Close]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match: gi|659133200|ref|XP_008466608.1| (PREDICTED: uncharacterized protein LOC103503976 [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 2.1e-112
Identity = 209/223 (93.72%), Postives = 213/223 (95.52%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L +SGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNEDDDD EFEN+HWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R HK SGSS KTI RSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           FPNPSKEQLVDVVQRHFMSQQ+DELQVIVGFVHAAKRLKT+CK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 223

[Close]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match: gi|449460121|ref|XP_004147794.1| (PREDICTED: uncharacterized protein LOC101206163 [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 2.7e-112
Identity = 211/224 (94.20%), Postives = 215/224 (95.98%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L +SGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNEDDDD EFEN+HWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R RTHKSSGSS KTI RSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRTHKSSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLK-TICK 224
           FPNPSKEQLVDVVQRHFMSQQ+DELQVIVGFVHAAKRLK T+CK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTTVCK 224

[Close]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match: gi|1009134717|ref|XP_015884599.1| (PREDICTED: uncharacterized protein LOC107420216 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 396.4 bits (1017), Expect = 3.4e-107
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 1 

Query: 1   MLEAVESSVNGGFSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGGF+QLQ+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFAQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVI APTGNE++DD +FEN+ WNGSDMASDDT KSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEEDDLDFENMQWNGSDMASDDTQKSHRS 120

Query: 121 RHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RHR HKSSGSSHKT+ RS S +SQSKGSISTPRGS KVDL KLEM+ALWRYWRHFNLVDA
Sbjct: 121 RHRVHKSSGSSHKTMCRSLSCDSQSKGSISTPRGSTKVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFV AAKRLKT+CK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVQAAKRLKTVCK 223

[Close]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match: gi|728826431|gb|KHG06715.1| (Histone deacetylase complex subunit SAP30 [Gossypium arboreum])

HSP 1 Score: 391.7 bits (1005), Expect = 8.4e-106
Identity = 198/224 (88.39%), Postives = 210/224 (93.75%), Query Frame = 1 

Query: 1   MLEAVESSVNGG-FSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60
           MLEA+ESSVNGG FSQ Q+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MLEAMESSVNGGGFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 61  GLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHR 120
           GLGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD EFEN+ WNGSDMASDDT KSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHR 120

Query: 121 PRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVD 180
            RHRTHKS+GSSHKT+ RSFS +SQSKGS+STPRGS KVDL KLEM+ALWRYWRHFNLVD
Sbjct: 121 SRHRTHKSTGSSHKTMSRSFSCDSQSKGSVSTPRGSTKVDLSKLEMAALWRYWRHFNLVD 180

Query: 181 AFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           A PNPSKEQLVDVVQRHF+SQQ+DELQVIVGFV AAKRLKT+CK
Sbjct: 181 AIPNPSKEQLVDVVQRHFVSQQMDELQVIVGFVQAAKRLKTVCK 224

[Close]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match: gi|823156283|ref|XP_012478073.1| (PREDICTED: uncharacterized protein LOC105793772 [Gossypium raimondii])

HSP 1 Score: 391.3 bits (1004), Expect = 1.1e-105
Identity = 198/224 (88.39%), Postives = 210/224 (93.75%), Query Frame = 1 

Query: 1   MLEAVESSVNGG-FSQLQTSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60
           MLEA+ESSVNGG FSQ Q+ GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV
Sbjct: 1   MLEAMESSVNGGGFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAV 60

Query: 61  GLGGWHWLVLTNGIEVKLQRNALSVIGAPTGNEDDDDFEFENVHWNGSDMASDDTLKSHR 120
           GLGGWHWLVLTNGIEVKLQRNALSVI APTGNE+DDD EFEN+ WNGSDMASDDT KSHR
Sbjct: 61  GLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTHKSHR 120

Query: 121 PRHRTHKSSGSSHKTIGRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVD 180
            RHRTHKS+GSSHKT+ RSFS +SQSKGS+STPRGS KVDL KLEM+ALWRYWRHFNLVD
Sbjct: 121 SRHRTHKSTGSSHKTMSRSFSCDSQSKGSVSTPRGSTKVDLSKLEMAALWRYWRHFNLVD 180

Query: 181 AFPNPSKEQLVDVVQRHFMSQQIDELQVIVGFVHAAKRLKTICK 224
           A PNPSKEQLVDVVQRHF+SQQ+DELQVIVGFV AAKRLKT+CK
Sbjct: 181 AIPNPSKEQLVDVVQRHFVSQQMDELQVIVGFVQAAKRLKTVCK 224

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g01220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDS8_CUCSA1.9e-11294.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G855270 PE=4 SV=1[more]
A0A0B0N115_GOSAR5.8e-10688.39Histone deacetylase complex subunit SAP30 OS=Gossypium arboreum GN=F383_33863 PE... [more]
A0A0D2NAL6_GOSRA7.6e-10688.39Uncharacterized protein OS=Gossypium raimondii GN=B456_005G106500 PE=4 SV=1[more]
E0CQ00_VITVI1.7e-10588.34Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11970 PE=4 SV=... [more]
W9RT50_9ROSA2.2e-10588.79Uncharacterized protein OS=Morus notabilis GN=L484_021213 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01220 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G19330.35.4e-8775.54 unknown protein[more]
AT1G75060.11.2e-7871.89 unknown protein[more]
BLAST of Cp4.1LG06g01220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133200|ref|XP_008466608.1|2.1e-11293.72PREDICTED: uncharacterized protein LOC103503976 [Cucumis melo][more]
gi|449460121|ref|XP_004147794.1|2.7e-11294.20PREDICTED: uncharacterized protein LOC101206163 [Cucumis sativus][more]
gi|1009134717|ref|XP_015884599.1|3.4e-10789.69PREDICTED: uncharacterized protein LOC107420216 isoform X2 [Ziziphus jujuba][more]
gi|728826431|gb|KHG06715.1|8.4e-10688.39Histone deacetylase complex subunit SAP30 [Gossypium arboreum][more]
gi|823156283|ref|XP_012478073.1|1.1e-10588.39PREDICTED: uncharacterized protein LOC105793772 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR025718SAP30_Sin3-bd
IPR024145His_deAcase_SAP30/SAP30L
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01220.1Cp4.1LG06g01220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 11..223
score: 2.6E
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 163..216
score: 2.8
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 11..223
score: 2.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01220Cucsa.232370Cucumber (Gy14) v1cgycpeB0613
Cp4.1LG06g01220Cucsa.342130Cucumber (Gy14) v1cgycpeB0896
Cp4.1LG06g01220CmaCh01G018890Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01220CmaCh05G002240Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01220CmaCh09G001730Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01220CmaCh12G004920Cucurbita maxima (Rimu)cmacpeB198
Cp4.1LG06g01220CmoCh12G004390Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01220CmoCh05G002310Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01220CmoCh09G001700Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01220CmoCh01G019520Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01220Cla020742Watermelon (97103) v1cpewmB765
Cp4.1LG06g01220Cla022515Watermelon (97103) v1cpewmB756
Cp4.1LG06g01220Csa2G361400Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g01220Csa3G855270Cucumber (Chinese Long) v2cpecuB779
Cp4.1LG06g01220MELO3C003880Melon (DHL92) v3.5.1cpemeB726
Cp4.1LG06g01220MELO3C010922Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01220ClCG05G019190Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01220ClCG08G015330Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g01220CSPI02G19770Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g01220CSPI03G42470Wild cucumber (PI 183967)cpecpiB781
Cp4.1LG06g01220Lsi08G014170Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01220Lsi04G016400Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01220MELO3C003880.2Melon (DHL92) v3.6.1cpemedB859
Cp4.1LG06g01220MELO3C010922.2Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01220CsaV3_2G028460Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g01220CsaV3_3G044890Cucumber (Chinese Long) v3cpecucB0966
Cp4.1LG06g01220Bhi04G000247Wax gourdcpewgoB0976
Cp4.1LG06g01220Bhi11G002156Wax gourdcpewgoB0973
Cp4.1LG06g01220CsGy3G039990Cucumber (Gy14) v2cgybcpeB438
Cp4.1LG06g01220CsGy2G019580Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01220Carg17128Silver-seed gourdcarcpeB1310
Cp4.1LG06g01220Carg04071Silver-seed gourdcarcpeB1365
Cp4.1LG06g01220Carg08739Silver-seed gourdcarcpeB0154
Cp4.1LG06g01220Carg11817Silver-seed gourdcarcpeB0267
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g01220Cp4.1LG11g01950Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g01220Cp4.1LG02g07350Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g01220Cp4.1LG07g04290Cucurbita pepo (Zucchini)cpecpeB510
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01220Cucurbita pepo (Zucchini)cpecpeB422