Cp4.1LG05g03000 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g03000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCHCH domain containing protein
LocationCp4.1LG05 : 2130928 .. 2133276 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGTTCGAACGTGGAATCTGCGAATACCTCTTTTTACCTCTTTAGCCGCAGCTTTGGTTTCCTTTTTCTTTTCTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCATCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGGTATTCGTTTTCTCTGTTCAATTTTTGCCCTAACTGTTCGTGTTTATTTCGATATTTGATGAACTCAATTGGTGCTTTGTTTATTTTCGGAATTTTCGAATTAGATCGCCTTGCACTCTGAATAGGATTTGCGGAGTATCGATTGATTTTTTTATTCCATGGAGTTCGATTGTTATTCTCCAAATCGTGATTGATATTATATAATTTATTTTTCTAGATTTAGATTAGGATTCGTGAAATCGAGGATTATGCTTGAAATGATAATCTAGGTTTCTGGAATGATCTTTGATTTCACAATTTAGGATATGGCAGGTAATTGTAATTCACTTCACACTGCAACGCTGATTAAAATACTCAAAACGCGTGGTTTCTTGTTTTGATTATTTGTTCGGATTGGCTCGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTCACNGGTAATTGTAATTCACTTCACACTGCAACGCTGATTAAAATACGAGGATTATGCTTGAAATGATAATCTAGGTAATTTAGGATATGGCGTGGTTTCTCGTTTTGATTATTTGTTCGGATTGGCTCGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTCACTATTCTAAATGCTTAACACTTGCTTCACATTCATATTCATATTTGCTGTATAAGCAACAAAATGTAACTGTTCTTTTCTTTTCCTTGAATTTGTTGCTTCATCCTTCGCCAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTTGATTTGGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTANAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACAAATTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCGTAGGAGACATTGTCTGATTTTGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTGGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCTATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAACCACTCAACATTGGAGCATTGAGGTAAAGAATTGATCATTGCATCAATTGACATTAAACTGCAAAGAAAAAGAAAACAAAAACCCCACTTTTTACATTGGAGCTCTCGGGATTGAATTTAATTATTTTGTGCACTAATTTTACAAACTGATTGGAAGCTCTGCTAAATGAATAATGTAAGTTAGCAGCAACGCCAACAACATCAGCACGTACGCTATTCCTTGGTCTAAGCTCGTCCCTGCAAATTTCCAAACATAGAACTTAATTACTAACATGTTTTTATTCTTTTTTTCTCAATAATAATGAAAAGAACAAACCATCGCTAGCAATGGGAGGTTGGGCTGGAGACAAAGAAGGATCAGCGGCGGAGGCAGGGAAAAGCATAGCCAAAACAAAAGCAACAGCGACTAAAACGCCATAAGGGACCTTATTATAAGCAACGACCTCCATTGTTATTGTTGTTATATAGTGTTCGACGACAATTAATCTCCCTCCCCGGAGAGGCGCGGGAGAGAGAGACTAACACACAAACTGAATTACTCAATCCCGAAGACGACTATGGCTGCTCTCCACGGCGTTGCAATGGCTGTGTGGCTTTCAACCAATCCAGGGTGTGGGTCTTATACCCGCTGCATGCTTCGAACGGCATGGCCGGAAATGTTGCAGCTACTGCATGTTTCCCCACACGACTCGGTCATTTTGAGGCCCTCATCCATCATTACTCTTTTTTCCTTTTAGGCTTTGTTTGAATGAGTCCCTGTGGCTATGTTGAGGTGACCCTTCTTAATCCAATCGAATATATATGACAATGGTTTCATTGGATTTGAGTCTATTTTTTAGTTTTTTCCTTATTAATCCATTATAT

mRNA sequence

CGAGTTCGAACGTGGAATCTGCGAATACCTCTTTTTACCTCTTTAGCCGCAGCTTTGGTTTCCTTTTTCTTTTCTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCATCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTTGATTTGGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTANAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACAAATTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCGTAGGAGACATTGTCTGATTTTGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTGGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCTATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAACCACTCAACATTGGAGCATTGAGGTAAAGAATTGATCATTGCATCAATTGACATTAAACTGCAAAGAAAAAGAAAACAAAAACCCCACTTTTTACATTGGAGCTCTCGGGATTGAATTTAATTATTTTGTGCACTAATTTTACAAACTGATTGGAAGCTCTGCTAAATGAATAATGTAAGTTAGCAGCAACGCCAACAACATCAGCACGTACGCTATTCCTTGGTCTAAGCTCGTCCCTGCAAATTTCCAAACATAGAACTTAATTACTAACATGTTTTTATTCTTTTTTTCTCAATAATAATGAAAAGAACAAACCATCGCTAGCAATGGGAGGTTGGGCTGGAGACAAAGAAGGATCAGCGGCGGAGGCAGGGAAAAGCATAGCCAAAACAAAAGCAACAGCGACTAAAACGCCATAAGGGACCTTATTATAAGCAACGACCTCCATTGTTATTGTTGTTATATAGTGTTCGACGACAATTAATCTCCCTCCCCGGAGAGGCGCGGGAGAGAGAGACTAACACACAAACTGAATTACTCAATCCCGAAGACGACTATGGCTGCTCTCCACGGCGTTGCAATGGCTGTGTGGCTTTCAACCAATCCAGGGTGTGGGTCTTATACCCGCTGCATGCTTCGAACGGCATGGCCGGAAATGTTGCAGCTACTGCATGTTTCCCCACACGACTCGGTCATTTTGAGGCCCTCATCCATCATTACTCTTTTTTCCTTTTAGGCTTTGTTTGAATGAGTCCCTGTGGCTATGTTGAGGTGACCCTTCTTAATCCAATCGAATATATATGACAATGGTTTCATTGGATTTGAGTCTATTTTTTAGTTTTTTCCTTATTAATCCATTATAT

Coding sequence (CDS)

ATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGA

Protein sequence

MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKPSGKKST
BLAST of Cp4.1LG05g03000 vs. TrEMBL
Match: A0A0A0KQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

BLAST of Cp4.1LG05g03000 vs. TrEMBL
Match: M5WP14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

BLAST of Cp4.1LG05g03000 vs. TrEMBL
Match: A0A061GD02_THECC (Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

BLAST of Cp4.1LG05g03000 vs. TrEMBL
Match: A0A067JMX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-16
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+EA+A+PVCA+EAL+LLNCV ESP+DQ KC  LL +LRECVL+KKVKKFSL D+E+  A
Sbjct: 1  MEEARAKPVCAEEALNLLNCVVESPYDQGKCVHLLQTLRECVLNKKVKKFSLDDQEKQEA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPVAKKA 67

BLAST of Cp4.1LG05g03000 vs. TrEMBL
Match: I1KPI1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+E++A+PVCA+EAL LLNCVT SP++++KC  LLHSLR CVL+KKVK FSLA +E+   
Sbjct: 1  MEESKAKPVCAEEALALLNCVTHSPYEEDKCLPLLHSLRHCVLAKKVKNFSLAGQEKQET 60

Query: 61 KPSGKKS 66
          KPSGKK+
Sbjct: 61 KPSGKKA 67

BLAST of Cp4.1LG05g03000 vs. TAIR10
Match: AT4G23760.1 (AT4G23760.1 Cox19-like CHCH family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 1   MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++    
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSE 106

Query: 61  SGKKST 67
               +T
Sbjct: 107 GAASAT 112

BLAST of Cp4.1LG05g03000 vs. NCBI nr
Match: gi|700194859|gb|KGN50036.1| (hypothetical protein Csa_5G151520 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

BLAST of Cp4.1LG05g03000 vs. NCBI nr
Match: gi|659074007|ref|XP_008437372.1| (PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKST 67
            KK++
Sbjct: 61 IVKKNS 66

BLAST of Cp4.1LG05g03000 vs. NCBI nr
Match: gi|595849992|ref|XP_007209834.1| (hypothetical protein PRUPE_ppa014495mg [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

BLAST of Cp4.1LG05g03000 vs. NCBI nr
Match: gi|694322461|ref|XP_009352358.1| (PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++A+ + VC QEALDLLNCV +SPFDQ+KC RLLHSLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDARGKAVCGQEALDLLNCVAQSPFDQDKCVRLLHSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPS 62
          KP+
Sbjct: 61 KPT 63

BLAST of Cp4.1LG05g03000 vs. NCBI nr
Match: gi|590678910|ref|XP_007040433.1| (Cox19-like CHCH family protein [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1

Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS7_CUCSA1.5e-2286.15Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1[more]
M5WP14_PRUPE3.3e-1771.64Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1[more]
A0A061GD02_THECC4.4e-1778.95Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1[more]
A0A067JMX7_JATCU4.8e-1668.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1[more]
I1KPI1_SOYBN1.1e-1565.67Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23760.13.0e-1760.61 Cox19-like CHCH family protein[more]
Match NameE-valueIdentityDescription
gi|700194859|gb|KGN50036.1|2.2e-2286.15hypothetical protein Csa_5G151520 [Cucumis sativus][more]
gi|659074007|ref|XP_008437372.1|2.9e-2283.33PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo][more]
gi|595849992|ref|XP_007209834.1|4.8e-1771.64hypothetical protein PRUPE_ppa014495mg [Prunus persica][more]
gi|694322461|ref|XP_009352358.1|6.3e-1773.02PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri][more]
gi|590678910|ref|XP_007040433.1|6.3e-1778.95Cox19-like CHCH family protein [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g03000.1Cp4.1LG05g03000.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009069Cysteine alpha-hairpin motif superfamilyGENE3DG3DSA:1.10.810.10coord: 5..42
score: 2.
IPR009069Cysteine alpha-hairpin motif superfamilyunknownSSF47072Cysteine alpha-hairpin motifcoord: 7..42
score: 4.7
NoneNo IPR availablePANTHERPTHR37750FAMILY NOT NAMEDcoord: 1..62
score: 1.1
NoneNo IPR availablePANTHERPTHR37750:SF1COX19-LIKE CHCH FAMILY PROTEINcoord: 1..62
score: 1.1