CmaCh02G014020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G014020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cox19-like CHCH family protein
Location	Cma_Chr02 : 8119441 .. 8120551 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAGCTTTGGTTTCCTTTTTTTTTTTTTTTTTAATCCAAATGCGCCTTCCCATTGTTTTTGTGATTCCTTCATAAACAAGCTGCAGCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTCTGCGAGAATGCGTGCTCAGTAAGGTATTCGTTTTCTCTATTCAATTTGCCCTAACTGTTCGTGTTTATTTCGATATTTGATGAACTCAATTGATGCTTTGTTTCTTTACGGAATTTTCGAATTAGATCGCCTTGCACTCTGAATAGGATTTGCTGAGTATCGATTGATTTTTTATTCTATGGAGTTCGATTGTTATTCTCCGAGTCGTGATTGATATTTAATTTATATTTCTAGGTTTAGATTAGGATTCGTGAAATCGAGGATTATGCTTGAAATGATAATCTAGTGTTCTGGAATGATCTTTGGTTTCACAATTTAGGATATGGCAGGTAATTGTAATTCACTTCTCACTGCAACGCTGATTAAAATACTCAAACGCGTGGTTTCTTGATTTGATTTTTTGTTCGGATTGGCTTGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTACATAGATTCACTTAAACGCTTAACACTTGCTTCACATTCATATTCATATTTGCTGTATAAGCAACAAAATGTAACTGTTGTTTTCTTTTCCTTGAATTTGTTGCTTCATCCTTCGCCAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTCTTATTTGGGACTGAATTCTATCAAAATGATGACACCTTTGAATTCCTTCATGGAGTTAGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGAATTATTTTGGGAATCTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCAATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAAC

mRNA sequence

CGCAGCTTTGGTTTCCTTTTTTTTTTTTTTTTTAATCCAAATGCGCCTTCCCATTGTTTTTGTGATTCCTTCATAAACAAGCTGCAGCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTCTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTCTTATTTGGGACTGAATTCTATCAAAATGATGACACCTTTGAATTCCTTCATGGAGTTAGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGAATTATTTTGGGAATCTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCAATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAAC

Coding sequence (CDS)

ATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTCTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGA

Protein sequence

MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKPSGKKST

Homology

[Close]

BLAST of CmaCh02G014020 vs. TrEMBL
Match: A0A0A0KQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

[Close]

BLAST of CmaCh02G014020 vs. TrEMBL
Match: M5WP14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of CmaCh02G014020 vs. TrEMBL
Match: A0A061GD02_THECC (Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

[Close]

BLAST of CmaCh02G014020 vs. TrEMBL
Match: A0A067JMX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-16
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+EA+A+PVCA+EAL+LLNCV ESP+DQ KC  LL +LRECVL+KKVKKFSL D+E+  A
Sbjct: 1  MEEARAKPVCAEEALNLLNCVVESPYDQGKCVHLLQTLRECVLNKKVKKFSLDDQEKQEA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPVAKKA 67

[Close]

BLAST of CmaCh02G014020 vs. TrEMBL
Match: I1KPI1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+E++A+PVCA+EAL LLNCVT SP++++KC  LLHSLR CVL+KKVK FSLA +E+   
Sbjct: 1  MEESKAKPVCAEEALALLNCVTHSPYEEDKCLPLLHSLRHCVLAKKVKNFSLAGQEKQET 60

Query: 61 KPSGKKS 66
          KPSGKK+
Sbjct: 61 KPSGKKA 67

[Close]

BLAST of CmaCh02G014020 vs. TAIR10
Match: AT4G23760.1 (AT4G23760.1 Cox19-like CHCH family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 1   MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++    
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSE 106

Query: 61  SGKKST 67
               +T
Sbjct: 107 GAASAT 112

[Close]

BLAST of CmaCh02G014020 vs. NCBI nr
Match: gi|700194859|gb|KGN50036.1| (hypothetical protein Csa_5G151520 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

[Close]

BLAST of CmaCh02G014020 vs. NCBI nr
Match: gi|659074007|ref|XP_008437372.1| (PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKST 67
            KK++
Sbjct: 61 IVKKNS 66

[Close]

BLAST of CmaCh02G014020 vs. NCBI nr
Match: gi|595849992|ref|XP_007209834.1| (hypothetical protein PRUPE_ppa014495mg [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of CmaCh02G014020 vs. NCBI nr
Match: gi|694322461|ref|XP_009352358.1| (PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++A+ + VC QEALDLLNCV +SPFDQ+KC RLLHSLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDARGKAVCGQEALDLLNCVAQSPFDQDKCVRLLHSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPS 62
          KP+
Sbjct: 61 KPT 63

[Close]

BLAST of CmaCh02G014020 vs. NCBI nr
Match: gi|590678910|ref|XP_007040433.1| (Cox19-like CHCH family protein [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

The following BLAST results are available for this feature:

BLAST of CmaCh02G014020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G014020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQS7_CUCSA	1.5e-22	86.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1	[more]
M5WP14_PRUPE	3.3e-17	71.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1	[more]
A0A061GD02_THECC	4.4e-17	78.95	Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1	[more]
A0A067JMX7_JATCU	4.8e-16	68.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1	[more]
I1KPI1_SOYBN	1.1e-15	65.67	Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1	[more]

BLAST of CmaCh02G014020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23760.1	3.0e-17	60.61	Cox19-like CHCH family protein	[more]

BLAST of CmaCh02G014020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194859\|gb\|KGN50036.1\|	2.2e-22	86.15	hypothetical protein Csa_5G151520 [Cucumis sativus]	[more]
gi\|659074007\|ref\|XP_008437372.1\|	2.9e-22	83.33	PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo]	[more]
gi\|595849992\|ref\|XP_007209834.1\|	4.8e-17	71.64	hypothetical protein PRUPE_ppa014495mg [Prunus persica]	[more]
gi\|694322461\|ref\|XP_009352358.1\|	6.3e-17	73.02	PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri]	[more]
gi\|590678910\|ref\|XP_007040433.1\|	6.3e-17	78.95	Cox19-like CHCH family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014020.1	CmaCh02G014020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 5..42 score: 2.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 7..42 score: 4.7
None	No IPR available	PANTHER	PTHR37750	FAMILY NOT NAMED	coord: 1..62 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G014020	Cucsa.303730	Cucumber (Gy14) v1	cgycmaB0837
CmaCh02G014020	Cla011388	Watermelon (97103) v1	cmawmB568
CmaCh02G014020	Csa5G151520	Cucumber (Chinese Long) v2	cmacuB608
CmaCh02G014020	MELO3C005735	Melon (DHL92) v3.5.1	cmameB530
CmaCh02G014020	ClCG01G002060	Watermelon (Charleston Gray)	cmawcgB518
CmaCh02G014020	CSPI05G04800	Wild cucumber (PI 183967)	cmacpiB614
CmaCh02G014020	CmoCh02G014350	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G014020	CmoCh15G013350	Cucurbita moschata (Rifu)	cmacmoB583
CmaCh02G014020	Cp4.1LG05g03000	Cucurbita pepo (Zucchini)	cmacpeB647
CmaCh02G014020	Cp4.1LG13g01220	Cucurbita pepo (Zucchini)	cmacpeB601
CmaCh02G014020	MELO3C005735.2	Melon (DHL92) v3.6.1	cmamedB609
CmaCh02G014020	CsaV3_5G002190	Cucumber (Chinese Long) v3	cmacucB0730
CmaCh02G014020	Cla97C01G002120	Watermelon (97103) v2	cmawmbB600
CmaCh02G014020	Bhi12G000148	Wax gourd	cmawgoB0711
CmaCh02G014020	CsGy5G002080	Cucumber (Gy14) v2	cgybcmaB635
CmaCh02G014020	Carg21265	Silver-seed gourd	carcmaB0508

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G014020	CmaCh15G012650	Cucurbita maxima (Rimu)	cmacmaB312

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G014020	Wax gourd	cmawgoB0747
CmaCh02G014020	Bottle gourd (USVL1VR-Ls)	cmalsiB530
CmaCh02G014020	Silver-seed gourd	carcmaB1268