CmoCh02G014350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G014350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cox19-like CHCH family protein
Location	Cmo_Chr02 : 8465307 .. 8466408 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTCAGCCGCAGCTTTGGTTTCCCTTTTTTTTTTTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCAGCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGGTATTCGTTTTCTCTGTTCAATTTTTGCCCTAACTGTTCGTGTTTATTTCGATATTTGATAAACTCAATTGATGCTTTGTTTCTTTTCGGAATTTTCGAATTAGATCGCCTTGCACTCTGAATAGGATTTGCTGAGTATCGATTGATTTTTTTATTCCATGGAGTTCGATTAGGATTATATAATTTATTTTTCTAGGTTTAGATTAGGATTCGTGAAATCGAGGATTATGCTTGAAATGATAATCTAGTGTTCTGGAATGATCTTTGATTTCACAATTTAGGATATGGCAGGTAATTGTAATTCACTTCTCACTGCAACGCTGATTAAAATACTCAAACGCGTGGTTTCTTGATTTGATTATTTGTTCGGATTGGCTCGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTCAGTATTATAAACGCTTAACACTTGCTTCACATTCATATTCATATTTGCTGTATAAGCAACAAAATGTAACTGTTCTTTTCTTTTCCTTGAATTTGTTGCTTCATCCTTCGCCAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAAAGAGCACTTGAAGGAAGCAATTGAAGTTCCATTTGTAGGAGACATTGTCTGATTCGGGACTGAAATCTATCAAAATGACAGAATTCCTTCATGGAGCTAGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCAATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAAC

mRNA sequence

CCCTTCAGCCGCAGCTTTGGTTTCCCTTTTTTTTTTTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCAGCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAAAGAGCACTTGAAGGAAGCAATTGAAGTTCCATTTGTAGGAGACATTGTCTGATTCGGGACTGAAATCTATCAAAATGACAGAATTCCTTCATGGAGCTAGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCAATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAAC

Coding sequence (CDS)

ATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAAAGAGCACTTGAAGGAAGCAATTGA

Homology

[Close]

BLAST of CmoCh02G014350 vs. TrEMBL
Match: A0A0A0KQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-22
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKR 65
            K+
Sbjct: 61 IIKK 64

[Close]

BLAST of CmoCh02G014350 vs. TrEMBL
Match: M5WP14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKRA 66
          KP  K+A
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of CmoCh02G014350 vs. TrEMBL
Match: A0A061GD02_THECC (Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

[Close]

BLAST of CmoCh02G014350 vs. TrEMBL
Match: A0A067JMX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-16
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+EA+A+PVCA+EAL+LLNCV ESP+DQ KC  LL +LRECVL+KKVKKFSL D+E+  A
Sbjct: 1  MEEARAKPVCAEEALNLLNCVVESPYDQGKCVHLLQTLRECVLNKKVKKFSLDDQEKQEA 60

Query: 61 KPSGKRA 66
          KP  K+A
Sbjct: 61 KPVAKKA 67

[Close]

BLAST of CmoCh02G014350 vs. TrEMBL
Match: I1KPI1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.7e-16
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+E++A+PVCA+EAL LLNCVT SP++++KC  LLHSLR CVL+KKVK FSLA +E+   
Sbjct: 1  MEESKAKPVCAEEALALLNCVTHSPYEEDKCLPLLHSLRHCVLAKKVKNFSLAGQEKQET 60

Query: 61 KPSGKRA 66
          KPSGK+A
Sbjct: 61 KPSGKKA 67

[Close]

BLAST of CmoCh02G014350 vs. TAIR10
Match: AT4G23760.1 (AT4G23760.1 Cox19-like CHCH family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-17
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1   MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA----DEE 60
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+     D E
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSE 106

Query: 61  RAKPSGKR 65
            A  + KR
Sbjct: 107 GAASATKR 114

[Close]

BLAST of CmoCh02G014350 vs. NCBI nr
Match: gi|700194859|gb|KGN50036.1| (hypothetical protein Csa_5G151520 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-22
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKR 65
            K+
Sbjct: 61 IIKK 64

[Close]

BLAST of CmoCh02G014350 vs. NCBI nr
Match: gi|659074007|ref|XP_008437372.1| (PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 6.9e-22
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKR 65
            K+
Sbjct: 61 IVKK 64

[Close]

BLAST of CmoCh02G014350 vs. NCBI nr
Match: gi|595849992|ref|XP_007209834.1| (hypothetical protein PRUPE_ppa014495mg [Prunus persica])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKRA 66
          KP  K+A
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of CmoCh02G014350 vs. NCBI nr
Match: gi|694322461|ref|XP_009352358.1| (PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri])

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++A+ + VC QEALDLLNCV +SPFDQ+KC RLLHSLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDARGKAVCGQEALDLLNCVAQSPFDQDKCVRLLHSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPS 62
          KP+
Sbjct: 61 KPT 63

[Close]

BLAST of CmoCh02G014350 vs. NCBI nr
Match: gi|590678910|ref|XP_007040433.1| (Cox19-like CHCH family protein [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 6.6e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

The following BLAST results are available for this feature:

BLAST of CmoCh02G014350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G014350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQS7_CUCSA	2.8e-22	85.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1	[more]
M5WP14_PRUPE	2.1e-17	71.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1	[more]
A0A061GD02_THECC	4.6e-17	78.95	Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1	[more]
A0A067JMX7_JATCU	3.0e-16	68.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1	[more]
I1KPI1_SOYBN	6.7e-16	65.67	Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1	[more]

BLAST of CmoCh02G014350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23760.1	2.4e-17	64.71	Cox19-like CHCH family protein	[more]

BLAST of CmoCh02G014350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194859\|gb\|KGN50036.1\|	4.0e-22	85.94	hypothetical protein Csa_5G151520 [Cucumis sativus]	[more]
gi\|659074007\|ref\|XP_008437372.1\|	6.9e-22	84.38	PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo]	[more]
gi\|595849992\|ref\|XP_007209834.1\|	3.0e-17	71.64	hypothetical protein PRUPE_ppa014495mg [Prunus persica]	[more]
gi\|694322461\|ref\|XP_009352358.1\|	5.1e-17	73.02	PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri]	[more]
gi\|590678910\|ref\|XP_007040433.1\|	6.6e-17	78.95	Cox19-like CHCH family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G014350.1	CmoCh02G014350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 5..42 score: 3.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 7..42 score: 5.6
None	No IPR available	PANTHER	PTHR37750	FAMILY NOT NAMED	coord: 1..69 score: 7.5
None	No IPR available	PANTHER	PTHR37750:SF1	COX19-LIKE CHCH FAMILY PROTEIN	coord: 1..69 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G014350	Cucsa.303730	Cucumber (Gy14) v1	cgycmoB0832
CmoCh02G014350	CmaCh15G012650	Cucurbita maxima (Rimu)	cmacmoB298
CmoCh02G014350	CmaCh02G014020	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G014350	Cla011388	Watermelon (97103) v1	cmowmB563
CmoCh02G014350	Csa5G151520	Cucumber (Chinese Long) v2	cmocuB598
CmoCh02G014350	MELO3C005735	Melon (DHL92) v3.5.1	cmomeB519
CmoCh02G014350	ClCG01G002060	Watermelon (Charleston Gray)	cmowcgB516
CmoCh02G014350	CSPI05G04800	Wild cucumber (PI 183967)	cmocpiB606
CmoCh02G014350	Cp4.1LG05g03000	Cucurbita pepo (Zucchini)	cmocpeB596
CmoCh02G014350	Cp4.1LG13g01220	Cucurbita pepo (Zucchini)	cmocpeB550
CmoCh02G014350	MELO3C005735.2	Melon (DHL92) v3.6.1	cmomedB596
CmoCh02G014350	CsaV3_5G002190	Cucumber (Chinese Long) v3	cmocucB0718
CmoCh02G014350	Cla97C01G002120	Watermelon (97103) v2	cmowmbB575
CmoCh02G014350	Bhi12G000148	Wax gourd	cmowgoB0704
CmoCh02G014350	CsGy5G002080	Cucumber (Gy14) v2	cgybcmoB613
CmoCh02G014350	Carg21265	Silver-seed gourd	carcmoB0491

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G014350	CmoCh15G013350	Cucurbita moschata (Rifu)	cmocmoB250

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G014350	Silver-seed gourd	carcmoB1237
CmoCh02G014350	Wax gourd	cmowgoB0738
CmoCh02G014350	Bottle gourd (USVL1VR-Ls)	cmolsiB516