Carg21265 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21265
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cysteine alpha-hairpin motif superfamily
Location	Cucurbita_argyrosperma_scaffold_128 : 69149 .. 70004 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGGTAGTCATTCCCTCTCTTCAATTTTCCCTATGACTTCATTGTTTATTTCCATGTTCTTGTAATCAATTGGTGCTGTATTTGGAATTCTCGAATTAGGTCGTCCAGCTCTCGGAATAGGATTTGCCGAGTATTTGTTGAAATTTTGTTGCGTTGTTCTCATCGGAGTTCAAATTGTGATTCACCTATTATGTTTGGATTGAAATAGTTCTTTTAACTGTTCTGGAATGACATTTGATTTCATGCGAGTTTTCTTATTATGAATTTTCTTTGAATCGTTCCTTCGACGGAAAGTGAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC

mRNA sequence

CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGAAGGAATTTTGTAAGAGAAGGATATTGTTCATCTTAAAGTAAGTTCTGTTGTTGATTGTATTTGAAGTTTCCATTTCTAGGAGATATTTATACCTTTCCTTCCAATTACTGAGAATTGAATTATAACTTGTTTCATTTATAATTTTAAGTGTAGGGATCAAATAGACACAAACCTCAAAAACCTCAAATCTTAGAGAGATTTATCAAAAATAGGCATAAGCATTAAACAGCAAGCATTCAAATTAGAGGTTTGAAAGTTTGTAGTCCAAAAAGATAGTCTGCATTATGATTGCATTCTTCTACATGTAAAGCTCAGTTCTTGACATTAAACCAGAAAGC

Coding sequence (CDS)

CGCGGCATTGTTTACGATTCCTGGTTGATTTCCGCCATGGGTGAACCTCGATCTCAGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAATCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGATTAGCAAGAAGTTCTCTCTGGCTGATGAAGAACAAACAAAACAAATGAAGAATGCTTGA

Protein sequence

RGIVYDSWLISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISKKFSLADEEQTKQMKNA

Homology

[Close]

BLAST of Carg21265 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_5G151520 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 8.4e-19
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 73 M--KNA 74
          +  KNA
Sbjct: 61 IIKKNA 66

[Close]

BLAST of Carg21265 vs. NCBI nr
Match: PQM42529.1 (hypothetical protein Pyn_25850 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          MG+ R + VC QEALDLLNCVT+SPFDQ+KC  LL+SLRECV++   KKFSLAD+EQ
Sbjct: 1  MGDGRGKAVCGQEALDLLNCVTQSPFDQEKCVLLLNSLRECVLNKKVKKFSLADQEQ 57

[Close]

BLAST of Carg21265 vs. NCBI nr
Match: ONI07342.1 (hypothetical protein PRUPE_5G114300 [Prunus persica])

HSP 1 Score: 83.2 bits (204), Expect = 4.1e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M + R + VC QEALDLLNCVT+SPFDQ+KC RLL+SLRECV++   KKFSLAD+EQ
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQ 57

[Close]

BLAST of Carg21265 vs. NCBI nr
Match: EOY24934.1 (Cox19-like CHCH family protein [Theobroma cacao])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M E  +QPVCAQEAL LLNCVT+SPFDQ+KC RLLHSLR+CV+    KKFSL +++Q
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

[Close]

BLAST of Carg21265 vs. NCBI nr
Match: OAY59625.1 (hypothetical protein MANES_01G046100 [Manihot esculenta])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M E R++PVCAQEALDLLNCV +SP+DQ+KC  LL +LRECV++   KKFSLAD++Q
Sbjct: 1  MEEERAKPVCAQEALDLLNCVAQSPYDQEKCVLLLQALRECVLNKKVKKFSLADQDQ 57

[Close]

BLAST of Carg21265 vs. TAIR10
Match: AT4G23760.1 (Cox19-like CHCH family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 10  ISAMGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 69
           I +M +  +QP+C QEAL LLNCV ESPFDQ+KC R L SLRECV+S   KKFS+  ++ 
Sbjct: 44  IPSMEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDH 103

[Close]

BLAST of Carg21265 vs. TrEMBL
Match: tr|A0A0A0KQS7|A0A0A0KQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-19
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 73 M--KNA 74
          +  KNA
Sbjct: 61 IIKKNA 66

[Close]

BLAST of Carg21265 vs. TrEMBL
Match: tr|M5WP14|M5WP14_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-13
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M + R + VC QEALDLLNCVT+SPFDQ+KC RLL+SLRECV++   KKFSLAD+EQ
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQ 57

[Close]

BLAST of Carg21265 vs. TrEMBL
Match: tr|A0A2N9FMQ2|A0A2N9FMQ2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19949 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-13
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          +GE   QPVC ++ALDLLNCVT SP+DQ KC RLL SLR+CV++   KKFSLAD+EQ
Sbjct: 6  VGENEKQPVCGEQALDLLNCVTHSPYDQDKCLRLLQSLRDCVLNKKVKKFSLADQEQ 62

[Close]

BLAST of Carg21265 vs. TrEMBL
Match: tr|A0A061GD02|A0A061GD02_THECC (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M E  +QPVCAQEAL LLNCVT+SPFDQ+KC RLLHSLR+CV+    KKFSL +++Q
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

[Close]

BLAST of Carg21265 vs. TrEMBL
Match: tr|A0A2C9WJ58|A0A2C9WJ58_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G046100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQ 67
          M E R++PVCAQEALDLLNCV +SP+DQ+KC  LL +LRECV++   KKFSLAD++Q
Sbjct: 1  MEEERAKPVCAQEALDLLNCVAQSPYDQEKCVLLLQALRECVLNKKVKKFSLADQDQ 57

The following BLAST results are available for this feature:

BLAST of Carg21265 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50036.1	8.4e-19	78.79	hypothetical protein Csa_5G151520 [Cucumis sativus]	[more]
PQM42529.1	3.1e-13	70.18	hypothetical protein Pyn_25850 [Prunus yedoensis var. nudiflora]	[more]
ONI07342.1	4.1e-13	70.18	hypothetical protein PRUPE_5G114300 [Prunus persica]	[more]
EOY24934.1	1.5e-12	68.42	Cox19-like CHCH family protein [Theobroma cacao]	[more]
OAY59625.1	1.5e-12	66.67	hypothetical protein MANES_01G046100 [Manihot esculenta]	[more]

BLAST of Carg21265 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23760.1	2.0e-14	55.56	Cox19-like CHCH family protein	[more]

BLAST of Carg21265 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21265 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQS7\|A0A0A0KQS7_CUCSA	5.6e-19	78.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1	[more]
tr\|M5WP14\|M5WP14_PRUPE	2.7e-13	70.18	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1	[more]
tr\|A0A2N9FMQ2\|A0A2N9FMQ2_FAGSY	6.0e-13	66.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19949 PE=4 SV=1	[more]
tr\|A0A061GD02\|A0A061GD02_THECC	1.0e-12	68.42	Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=...	[more]
tr\|A0A2C9WJ58\|A0A2C9WJ58_MANES	1.0e-12	66.67	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G046100 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21265-RA	Carg21265-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37750	FAMILY NOT NAMED	coord: 13..69
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	SSF47072	Cysteine alpha-hairpin motif	coord: 20..54

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21265	Cla011388	Watermelon (97103) v1	carwmB0352
Carg21265	Csa5G151520	Cucumber (Chinese Long) v2	carcuB0390
Carg21265	MELO3C005735	Melon (DHL92) v3.5.1	carmeB0364
Carg21265	ClCG01G002060	Watermelon (Charleston Gray)	carwcgB0352
Carg21265	CSPI05G04800	Wild cucumber (PI 183967)	carcpiB0395
Carg21265	Cucsa.303730	Cucumber (Gy14) v1	carcgyB0420
Carg21265	CmaCh02G014020	Cucurbita maxima (Rimu)	carcmaB0508
Carg21265	CmaCh15G012650	Cucurbita maxima (Rimu)	carcmaB0505
Carg21265	CmoCh02G014350	Cucurbita moschata (Rifu)	carcmoB0491
Carg21265	CmoCh15G013350	Cucurbita moschata (Rifu)	carcmoB0488
Carg21265	Cp4.1LG13g01220	Cucurbita pepo (Zucchini)	carcpeB0502
Carg21265	Cp4.1LG05g03000	Cucurbita pepo (Zucchini)	carcpeB0504
Carg21265	CsGy5G002080	Cucumber (Gy14) v2	carcgybB0370
Carg21265	MELO3C005735.2	Melon (DHL92) v3.6.1	carmedB0369
Carg21265	CsaV3_5G002190	Cucumber (Chinese Long) v3	carcucB0394
Carg21265	Cla97C01G002120	Watermelon (97103) v2	carwmbB0376
Carg21265	Bhi12G000148	Wax gourd	carwgoB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21265	Cucurbita maxima (Rimu)	carcmaB0506
Carg21265	Cucurbita maxima (Rimu)	carcmaB0509
Carg21265	Cucurbita moschata (Rifu)	carcmoB0489
Carg21265	Cucurbita moschata (Rifu)	carcmoB0492
Carg21265	Cucurbita pepo (Zucchini)	carcpeB0503
Carg21265	Wild cucumber (PI 183967)	carcpiB0394
Carg21265	Cucumber (Chinese Long) v2	carcuB0389
Carg21265	Cucumber (Chinese Long) v3	carcucB0393
Carg21265	Bottle gourd (USVL1VR-Ls)	carlsiB327
Carg21265	Bottle gourd (USVL1VR-Ls)	carlsiB328
Carg21265	Melon (DHL92) v3.6.1	carmedB0370
Carg21265	Watermelon (Charleston Gray)	carwcgB0353
Carg21265	Watermelon (97103) v1	carwmB0351
Carg21265	Watermelon (97103) v2	carwmbB0377
Carg21265	Wax gourd	carwgoB0442
Carg21265	Silver-seed gourd	carcarB048
Carg21265	Silver-seed gourd	carcarB384
Carg21265	Silver-seed gourd	carcarB386
Carg21265	Cucumber (Gy14) v2	carcgybB0369
Carg21265	Cucumber (Gy14) v1	carcgyB0418