Cp4.1LG05g03000.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g03000.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CHCH domain containing protein
Location	Cp4.1LG05 : 2130928 .. 2133276 (+)
Sequence length	1633

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTTCGAACGTGGAATCTGCGAATACCTCTTTTTACCTCTTTAGCCGCAGCTTTGGTTTCCTTTTTCTTTTCTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCATCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGGTATTCGTTTTCTCTGTTCAATTTTTGCCCTAACTGTTCGTGTTTATTTCGATATTTGATGAACTCAATTGGTGCTTTGTTTATTTTCGGAATTTTCGAATTAGATCGCCTTGCACTCTGAATAGGATTTGCGGAGTATCGATTGATTTTTTTATTCCATGGAGTTCGATTGTTATTCTCCAAATCGTGATTGATATTATATAATTTATTTTTCTAGATTTAGATTAGGATTCGTGAAATCGAGGATTATGCTTGAAATGATAATCTAGGTTTCTGGAATGATCTTTGATTTCACAATTTAGGATATGGCAGGTAATTGTAATTCACTTCACACTGCAACGCTGATTAAAATACTCAAAACGCGTGGTTTCTTGTTTTGATTATTTGTTCGGATTGGCTCGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTCACNGGTAATTGTAATTCACTTCACACTGCAACGCTGATTAAAATACGAGGATTATGCTTGAAATGATAATCTAGGTAATTTAGGATATGGCGTGGTTTCTCGTTTTGATTATTTGTTCGGATTGGCTCGAACTTTTTGTCCTCAACATTCCAGGCACATAGATTCACTATTCTAAATGCTTAACACTTGCTTCACATTCATATTCATATTTGCTGTATAAGCAACAAAATGTAACTGTTCTTTTCTTTTCCTTGAATTTGTTGCTTCATCCTTCGCCAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTTGATTTGGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTANAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACAAATTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCGTAGGAGACATTGTCTGATTTTGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTGGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCTATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAACCACTCAACATTGGAGCATTGAGGTAAAGAATTGATCATTGCATCAATTGACATTAAACTGCAAAGAAAAAGAAAACAAAAACCCCACTTTTTACATTGGAGCTCTCGGGATTGAATTTAATTATTTTGTGCACTAATTTTACAAACTGATTGGAAGCTCTGCTAAATGAATAATGTAAGTTAGCAGCAACGCCAACAACATCAGCACGTACGCTATTCCTTGGTCTAAGCTCGTCCCTGCAAATTTCCAAACATAGAACTTAATTACTAACATGTTTTTATTCTTTTTTTCTCAATAATAATGAAAAGAACAAACCATCGCTAGCAATGGGAGGTTGGGCTGGAGACAAAGAAGGATCAGCGGCGGAGGCAGGGAAAAGCATAGCCAAAACAAAAGCAACAGCGACTAAAACGCCATAAGGGACCTTATTATAAGCAACGACCTCCATTGTTATTGTTGTTATATAGTGTTCGACGACAATTAATCTCCCTCCCCGGAGAGGCGCGGGAGAGAGAGACTAACACACAAACTGAATTACTCAATCCCGAAGACGACTATGGCTGCTCTCCACGGCGTTGCAATGGCTGTGTGGCTTTCAACCAATCCAGGGTGTGGGTCTTATACCCGCTGCATGCTTCGAACGGCATGGCCGGAAATGTTGCAGCTACTGCATGTTTCCCCACACGACTCGGTCATTTTGAGGCCCTCATCCATCATTACTCTTTTTTCCTTTTAGGCTTTGTTTGAATGAGTCCCTGTGGCTATGTTGAGGTGACCCTTCTTAATCCAATCGAATATATATGACAATGGTTTCATTGGATTTGAGTCTATTTTTTAGTTTTTTCCTTATTAATCCATTATAT

mRNA sequence

CGAGTTCGAACGTGGAATCTGCGAATACCTCTTTTTACCTCTTTAGCCGCAGCTTTGGTTTCCTTTTTCTTTTCTAATCCAAATGCGCCTTCCCATTGTTTTTGCGATTCCTTCATAAACAAGCTGCTGCATCTAGCTCACTGGTTTTGAAATCCACTTACTGTTCCGCCATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCATTTGTAGGAGACATTGTTGATTTGGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTANAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACAAATTGGTAAGAAGAGCACTTGAAGGAAGCAATTGAAGTTTCCGTAGGAGACATTGTCTGATTTTGGACTGAATTCTATCAAAATGATGACAGAATTCCTTCATGGAGTTGGTTCCAAACAAATCCAATAAATTTTGTTGAAGTTGAAAGATTGTCTAATTATTTTGGGAATCTTTGAAGTTTCTAGCAGATCGATCTCTGTTGTTTGTGAGCTATACATTATTCTGGGAAGCTTTTTTACTCTTTAGAAAAACATCATCCAACCACTCAACATTGGAGCATTGAGGTAAAGAATTGATCATTGCATCAATTGACATTAAACTGCAAAGAAAAAGAAAACAAAAACCCCACTTTTTACATTGGAGCTCTCGGGATTGAATTTAATTATTTTGTGCACTAATTTTACAAACTGATTGGAAGCTCTGCTAAATGAATAATGTAAGTTAGCAGCAACGCCAACAACATCAGCACGTACGCTATTCCTTGGTCTAAGCTCGTCCCTGCAAATTTCCAAACATAGAACTTAATTACTAACATGTTTTTATTCTTTTTTTCTCAATAATAATGAAAAGAACAAACCATCGCTAGCAATGGGAGGTTGGGCTGGAGACAAAGAAGGATCAGCGGCGGAGGCAGGGAAAAGCATAGCCAAAACAAAAGCAACAGCGACTAAAACGCCATAAGGGACCTTATTATAAGCAACGACCTCCATTGTTATTGTTGTTATATAGTGTTCGACGACAATTAATCTCCCTCCCCGGAGAGGCGCGGGAGAGAGAGACTAACACACAAACTGAATTACTCAATCCCGAAGACGACTATGGCTGCTCTCCACGGCGTTGCAATGGCTGTGTGGCTTTCAACCAATCCAGGGTGTGGGTCTTATACCCGCTGCATGCTTCGAACGGCATGGCCGGAAATGTTGCAGCTACTGCATGTTTCCCCACACGACTCGGTCATTTTGAGGCCCTCATCCATCATTACTCTTTTTTCCTTTTAGGCTTTGTTTGAATGAGTCCCTGTGGCTATGTTGAGGTGACCCTTCTTAATCCAATCGAATATATATGACAATGGTTTCATTGGATTTGAGTCTATTTTTTAGTTTTTTCCTTATTAATCCATTATAT

Coding sequence (CDS)

ATGGATGAAGCTCAAGCTCAGCCGGTTTGCGCTCAAGAAGCTCTCGATTTGCTCAATTGCGTTACGGAGTCTCCGTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGAGAATGCGTGCTCAGTAAGAAAGTGAAAAAGTTCTCGTTGGCTGATGAAGAACGAGCAAAACCAAGTGGTAAGAAGAGCACTTGA

Protein sequence

MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKPSGKKST

Homology

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL
Match: A0A0A0KQS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL
Match: M5WP14_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL
Match: A0A061GD02_THECC (Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL
Match: A0A067JMX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-16
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+EA+A+PVCA+EAL+LLNCV ESP+DQ KC  LL +LRECVL+KKVKKFSL D+E+  A
Sbjct: 1  MEEARAKPVCAEEALNLLNCVVESPYDQGKCVHLLQTLRECVLNKKVKKFSLDDQEKQEA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPVAKKA 67

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL
Match: I1KPI1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M+E++A+PVCA+EAL LLNCVT SP++++KC  LLHSLR CVL+KKVK FSLA +E+   
Sbjct: 1  MEESKAKPVCAEEALALLNCVTHSPYEEDKCLPLLHSLRHCVLAKKVKNFSLAGQEKQET 60

Query: 61 KPSGKKS 66
          KPSGKK+
Sbjct: 61 KPSGKKA 67

[Close]

BLAST of Cp4.1LG05g03000.1 vs. TAIR10
Match: AT4G23760.1 (AT4G23760.1 Cox19-like CHCH family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 1   MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++    
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDHDSE 106

Query: 61  SGKKST 67
               +T
Sbjct: 107 GAASAT 112

[Close]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr
Match: gi|700194859|gb|KGN50036.1| (hypothetical protein Csa_5G151520 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKS 66
            KK+
Sbjct: 61 IIKKN 65

[Close]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr
Match: gi|659074007|ref|XP_008437372.1| (PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKP 60
          MDE Q QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLA+EE+ KP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 SGKKST 67
            KK++
Sbjct: 61 IVKKNS 66

[Close]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr
Match: gi|595849992|ref|XP_007209834.1| (hypothetical protein PRUPE_ppa014495mg [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-17
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++ + + VC QEALDLLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPSGKKS 66
          KP  KK+
Sbjct: 61 KPIDKKA 67

[Close]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr
Match: gi|694322461|ref|XP_009352358.1| (PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 46/63 (73.02%), Postives = 56/63 (88.89%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER--A 60
          M++A+ + VC QEALDLLNCV +SPFDQ+KC RLLHSLRECVL+KKVKKFSLAD+E+  A
Sbjct: 1  MEDARGKAVCGQEALDLLNCVAQSPFDQDKCVRLLHSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPS 62
          KP+
Sbjct: 61 KPT 63

[Close]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr
Match: gi|590678910|ref|XP_007040433.1| (Cox19-like CHCH family protein [Theobroma cacao])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1


Query: 1  MDEAQAQPVCAQEALDLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLADEER 58
          M+EA AQPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL ++++
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQ 57

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g03000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQS7_CUCSA	1.5e-22	86.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151520 PE=4 SV=1	[more]
M5WP14_PRUPE	3.3e-17	71.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014495mg PE=4 SV=1	[more]
A0A061GD02_THECC	4.4e-17	78.95	Cox19-like CHCH family protein OS=Theobroma cacao GN=TCM_016398 PE=4 SV=1	[more]
A0A067JMX7_JATCU	4.8e-16	68.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20492 PE=4 SV=1	[more]
I1KPI1_SOYBN	1.1e-15	65.67	Uncharacterized protein OS=Glycine max GN=GLYMA_08G021000 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g03000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23760.1	3.0e-17	60.61	Cox19-like CHCH family protein	[more]

BLAST of Cp4.1LG05g03000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194859\|gb\|KGN50036.1\|	2.2e-22	86.15	hypothetical protein Csa_5G151520 [Cucumis sativus]	[more]
gi\|659074007\|ref\|XP_008437372.1\|	2.9e-22	83.33	PREDICTED: uncharacterized protein LOC103482806 [Cucumis melo]	[more]
gi\|595849992\|ref\|XP_007209834.1\|	4.8e-17	71.64	hypothetical protein PRUPE_ppa014495mg [Prunus persica]	[more]
gi\|694322461\|ref\|XP_009352358.1\|	6.3e-17	73.02	PREDICTED: uncharacterized protein LOC103943742 [Pyrus x bretschneideri]	[more]
gi\|590678910\|ref\|XP_007040433.1\|	6.3e-17	78.95	Cox19-like CHCH family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g03000	Cp4.1LG05g03000	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g03000.1:five_prime_utr:001	Cp4.1LG05g03000.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g03000.1:cds:002	Cp4.1LG05g03000.1:cds:002	CDS
Cp4.1LG05g03000.1:cds:001	Cp4.1LG05g03000.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g03000.1:three_prime_utr:001	Cp4.1LG05g03000.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g03000.1	Cp4.1LG05g03000.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 5..42 score: 2.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 7..42 score: 4.7
None	No IPR available	PANTHER	PTHR37750	FAMILY NOT NAMED	coord: 1..62 score: 1.1
None	No IPR available	PANTHER	PTHR37750:SF1	COX19-LIKE CHCH FAMILY PROTEIN	coord: 1..62 score: 1.1