Cp4.1LG04g07080 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g07080
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Copper-transporting atpase paa1, putative
Location	Cp4.1LG04 : 4455198 .. 4459158 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTCTCGTTGGTACCCGGGAGAGGGTCAACAGATAAGGGCAGATTTCTTTCATCCATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCACCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTCCTTTCTCGCTGCGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATAGTAATGACGGTGTTCGTGGAGACGGCGGCGGCGGCGGCGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCAGCGGATGCGATTGTTCTGGATGTTGGAGTGCGAGATAGTTCTCTCCCTTTTCAGTTTTCGATTGGTGCTAATTTTGATGGATTCTGTGCTGTTTTTAATAGGGGATGATGTGCACGGGCTGTTCCACGAGTGTCAAGAAGATTCTTGAAAGTCAGGTGGTTATATACTTATAGTTTCTTCTTATCTGTTTTACTTACTCTTTGGTGATCGTTACTTATCCTTAAATACTTCAGTTGCTGATTGAACTGAGCATGTAGGAACTCTGTACGAGTTTTATTGTTTGATTGATATCTAAGAATCAGAGATTTAAGAGGGATGGGAACAGGGTATAATAGCATTTTCAGTATATAATTGAATTGTTTCAGGTTTCTAGTTGGACTTGTATAATCTAACAGAGTAATTGAATTTAGGCCTAATCTATCAGGAATCACGAACCTCCACAATGGTATAATATTGTCCACTTTGAACATAAGCTCTCATCGCTTTGCTTTTGGTTTCTCCGAAAGCTCTCGTGCCAATGGAGATGTACTCTTAATTAGCCAATGTGGGACTCCCTCCCAACAATCCTCCCTTCGAACAAAGTACACCATAGAGTCTCCTTTGAGGCCTATGGAGCCCTCAAACAACATCTCCTTAATCGAGGCTTGACTACTTTCTCTTTCTCTAGAGCCTTCGAACAAAGTACACCATTTGTTTGACACTTGAGTCACTTTTGACTACACCTCCGAGACTCACCACTTCTTTGTTCGAAATTTGAGGATTCTATTGACATGTCTAAGTTAAGGGCATAACTCTGATACCATGTTAGAAATTACGGAATCAAGTTGTAATTGTATGAGCCCAATAGGGTACCATTTGTAACATGGCTCTGATACCATGTTAGGAACCACAAACCTTCACAATGGTATGATTGTCCACTTTGAGCATAAGCTCTCATGGTTTTGCTTTTGGTTTCCACAAAAGGCCTCATACCAATGGAGATAGTGTTCCTTATAAACCCATGATCTTCTTCTTAATTAGCCAATGTGGGGGACTACTCTTTTCAATAATCCTCAACAATTGTTGAGAATTGATGGAGAGGAGTCCCACATCGGCTAATTAAGAGGAAGATCATGAGTTTATAAGTAAAGAACACTATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAACAACAAAGCCATGAGAGCTTATTCTCAAAGTGGACAATATTATACCATCGTGGAAGGTCGTAGTTCGTAACAACATAATATATTGGAGTTTTGCACGCTTTAGTATGATATTAAAGCTAGACATACAACTGAAAATTTCATTTCTTTCCCGATTAATGTTGATCATTTGTTATCATGGACAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTCAGTGTCATAAATTCACACCACTCAACCTCCATACTTCTTGAACTTGAGCTCTTAGTATAAGATATATGATTTTCATATTGAGTATTTTTAAATGATAATATTTGAAAATGTGGATTACCTAGATTATTGTACGAATCATATTGCTGTCTAGGACATGTTATATAGTTTCGACAACTTGCTAATTTTGTATTTCCCATCATCTTTCTTGCTCACGAATTACTTGGGATATTGATTTTACATGTTTGAATTTCTTTCCGAACATGAGGATTATTGGATTGTTCAATTGATTGTTAGGAACCATGGACTTCCACAATGGTACGATATTATCCACTTTGAGCATAAGCTCTCATGTCTTTGCTTTTGGTTTCCTCAAAAGGCCTCGTATCAATGGAAATAGTATTCCTTACTTATAAACCCATGATCTTCTGTTTAATTAGCTAATGTGGGACTCCCTCCCAACAATCCTCCCCTCGAACAAAATACACCATAGAGCTTGGCTTATGTAGCCCTCGAACAGCCTCCCCTTATTCGAGGCACGACTCCTTCTCTGGAGCCTTCAAACAAAGTACACCCATTGTTCGACACTTGAGTCACTTTTGACTACATCTTCGAGGCTCACAACTTCTTTGTTTGACATTTGAGGATTCTACTGACATGACTAAGTTAAGGGATGACTCTAATATCATGTTAGGAACCACGGACCTCCACAATCGTATGATATTGTCCACTTTAAGCATAAGTTCTCATGATTTTGCTTTTGGTTTCTCCAAAAGTCCTCATACTAACGAAGATAGTATTCCTTACTTATAAACTCATTATCTTCCCCTTAATTAGCCAACTTGGGTCTCCCTCCCAACCATCCTCAACATTGATTTCTCTCTTTTACCTTTCTTTCTTTTTTCATTCATTCACTAGGAATTTGGCATTTGAAATACTAGACCATACCATCTTGGTATAGCAAACAAAACAATTCAACACTGTACTGAAAACAAAGAAGCCTTAAAAGTAGGCAGAGTCAATGTTCTATATATATATATATATATATATATATATATATATACTTTTGATGCTTCAATCCCTAAGCTTAGGTTCTCAATCATTGTAAGACTTGCAATAACGAGTAAAAGAAAAACAATACACTAACAATTGTTGTTCCTTTAATTTTTAGGTTCTGAATACAAAAGATGGTTCTAATGATAATTCTTTCCTACTCTTATATTACATCCTCAGCAAGTGTCGTAATGCTTGTTAAAATCTTGATTATTAGATGTTAAGGCTTATATGTAGTATCAATATTTTGCCAGTCCTGAAATGCTAGATTTTTTGTTGTTTAAAATTGCCATATGATCAAAGGGCTGGGTTATTCATTTATAAATTTAGGCACAGAAGAGATAGAAAATATAGTTCCTTGAGAAGAGATAGAAAGAAGACCAAAGAAACGAGTTCAGTCTTGCAAGAGAGAAGAAGAACAAAACACACATGCACATCTATTATAACGACCCTAATTTTCTACTGGCCTAGAGTCGCTACCACATGCATGACATAACTTCTTTATGCGGAAATATTCATTAGGACCGTCATGCATATGGTAGTGGCCGAATGTTTTCGCATAAGAAGATTACGTCATGCATATAGTAGCGGTTCTATTTCCCTTTTGAAATTAGGGTCGTTACACGTATTCTCTGATGATATCTGTAGTTTCCATGACTTATGTGAATGCTGGTTATTTACAGGTCAAGGTGCTATAGGAGGAGATGTTTCATGATAGAAAATGCAAGATAAATTGTTCAAGAGCAACTGCTTTATGGTGCAACCCATTTTCAACATTGGTTGCCTTATTAGTAGACTTTAGAATTGAACTCGAAAATAAATGTCGTTCTAACTTGTTCTATCAATAAACTGATAGATTTCAGCAATGACGGTTTTAAAACTCAAAGGGAATGATGATGATGAAAGTACAGATTTTTTCTTTCGCCTCTCGTGTAAACCATCGTGCTTGTAAGTGACATCGGTTTGCAACTTTTATGAGTACAAAAAAGACTCCAACTTAATCATAGTTTAACGGGTTAAAACATGTAGTCTCGGCCAAGATATTAT

mRNA sequence

CCATTCTCGTTGGTACCCGGGAGAGGGTCAACAGATAAGGGCAGATTTCTTTCATCCATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCACCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTCCTTTCTCGCTGCGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATAGTAATGACGGTGTTCGTGGAGACGGCGGCGGCGGCGGCGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCAGCGGATGCGATTGTTCTGGATGTTGGAGGGATGATGTGCACGGGCTGTTCCACGAGTGTCAAGAAGATTCTTGAAAGTCAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTCAAGGTGCTATAGGAGGAGATGTTTCATGATAGAAAATGCAAGATAAATTGTTCAAGAGCAACTGCTTTATGGTGCAACCCATTTTCAACATTGGTTGCCTTATTAGTAGACTTTAGAATTGAACTCGAAAATAAATGTCGTTCTAACTTGTTCTATCAATAAACTGATAGATTTCAGCAATGACGGTTTTAAAACTCAAAGGGAATGATGATGATGAAAGTACAGATTTTTTCTTTCGCCTCTCGTGTAAACCATCGTGCTTGTAAGTGACATCGGTTTGCAACTTTTATGAGTACAAAAAAGACTCCAACTTAATCATAGTTTAACGGGTTAAAACATGTAGTCTCGGCCAAGATATTAT

Coding sequence (CDS)

ATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCACCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTCCTTTCTCGCTGCGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATAGTAATGACGGTGTTCGTGGAGACGGCGGCGGCGGCGGCGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCAGCGGATGCGATTGTTCTGGATGTTGGAGGGATGATGTGCACGGGCTGTTCCACGAGTGTCAAGAAGATTCTTGAAAGTCAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTCAAGGTGCTATAGGAGGAGATGTTTCATGA

Protein sequence

MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFIPISASGNSNDGVRGDGGGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQGQGAIGGDVS

Homology

[Close]

BLAST of Cp4.1LG04g07080 vs. Swiss-Prot
Match: HMA6_ARATH (Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.9e-25
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 1


Query: 59  FIPISASGNSN----DGVRGDGGGGG---GDDDSKLLDGEAEDNATLSADAIVLDVGGMM 118
           F  IS+ G S     +G  G GGGGG   GD  SKL    ++  +  S+D I+LDVGGM 
Sbjct: 99  FRSISSGGGSGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDVGGMT 158

Query: 119 CTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 175
           C GCS SVKKILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HLT CG
Sbjct: 159 CGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHLTNCG 218

[Close]

BLAST of Cp4.1LG04g07080 vs. Swiss-Prot
Match: HMA8_ARATH (Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-07
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 89  DGEAEDNATLSADA-IVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVA 148
           +   E   ++++D  I+LDV GMMC GC   VK +L S   V+ A V++ +ETA V    
Sbjct: 63  ESSIESVKSITSDTPILLDVSGMMCGGCVARVKSVLMSDDRVASAVVNMLTETAAVKFKP 122

Query: 149 EAKITPNWREELGEALAKHLTTCGFSSKAQGQG 181
           E ++T     +  E+LAK LT  GF +K +  G
Sbjct: 123 EVEVT----ADTAESLAKRLTESGFEAKRRVSG 151

[Close]

BLAST of Cp4.1LG04g07080 vs. TrEMBL
Match: A0A0A0K5Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062830 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 131/197 (66.50%), Postives = 140/197 (71.07%), Query Frame = 1


Query: 1   MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFI 60
           MDS +SLMASN+ L T  +             T +S  S  S F  R A PPIHR  KFI
Sbjct: 1   MDSAISLMASNSFLSTLSS-------------TSVSTISTLS-FPRRAALPPIHRRQKFI 60

Query: 61  PISASGNSNDGVRGD--GGGGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGM 120
            I ASGN N GVRG+  GGGGGGDD        DSKLL GEA+D+ATLSAD IVL V GM
Sbjct: 61  SIFASGNGNGGVRGESGGGGGGGDDGGPKGSDVDSKLLAGEADDDATLSADVIVLGVEGM 120

Query: 121 MCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTC 180
            C GC  SVK+ILESQP VSHA+VDLASETA VW VAEAKITPNWREELG ALAKHLTTC
Sbjct: 121 TCKGCCASVKRILESQPQVSHASVDLASETAIVWPVAEAKITPNWREELGVALAKHLTTC 180

Query: 181 GFSSKAQGQGAIGGDVS 188
           GFSSK QGQGAIGGDVS
Sbjct: 181 GFSSKVQGQGAIGGDVS 183

[Close]

BLAST of Cp4.1LG04g07080 vs. TrEMBL
Match: K4B287_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 1


Query: 63  SASGNSNDGVRGDGGGGGGDDDSKLLDGE---------AEDNATLSADAIVLDVGGMMCT 122
           +ASG  ND  RG+GGGGGG+ D     G+          ED + LS+D I+LDV GM C 
Sbjct: 100 AASGGGNDNPRGNGGGGGGNGDGATDGGKENPSVVAETGEDISALSSDVIILDVTGMTCG 159

Query: 123 GCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFS 182
           GC++SVK+ILESQP VS ATV+L +ETA VW V++AK+ PNW+++LGEALAKHL+TCGF 
Sbjct: 160 GCASSVKRILESQPQVSSATVNLTTETAIVWPVSDAKVVPNWQKQLGEALAKHLSTCGFK 219

Query: 183 SKAQGQGAIGGD 186
           S  +G+GAI G+
Sbjct: 220 SNVRGEGAIEGE 231

[Close]

BLAST of Cp4.1LG04g07080 vs. TrEMBL
Match: U5GWF6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21260g PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-30
Identity = 98/218 (44.95%), Postives = 128/218 (58.72%), Query Frame = 1


Query: 1   MDSLLSLMASNAPLFTSPTITL--------SFSRPNFTHPTFISPFSV---------TSP 60
           MDS L++ A+  PLFT   +          SF R + +    +   S+         +SP
Sbjct: 1   MDSALAISATALPLFTLSKVNRHFITHNARSFLRHSSSQRGTLRLSSICSHNNNALASSP 60

Query: 61  FSLRTAAPPIHRPSKFIPISAS--------GNSNDGVRGDGGGGGGDD----DSKLLDGE 120
           F L T  P + R  + +  SA+        G    G  G GGGGGG D    +S  + G 
Sbjct: 61  F-LCTVVPLLRRRLECVSSSAASFGTSSGGGGGGGGEFGSGGGGGGSDGGDAESNSVAGA 120

Query: 121 --AEDNATLSADAIVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEA 180
             AE+ + LS D I+LDVGGM C GC+ SVK+ILESQP VS A+V+LA+ETA VW V+EA
Sbjct: 121 VGAEEVSALSPDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLATETAIVWPVSEA 180

Query: 181 KITPNWREELGEALAKHLTTCGFSSKAQGQGAIGGDVS 188
           K+ PNW++ELGEALAKHLT+CGF S  +GQGA  GD+S
Sbjct: 181 KVVPNWQKELGEALAKHLTSCGFMSNLRGQGATEGDIS 217

[Close]

BLAST of Cp4.1LG04g07080 vs. TrEMBL
Match: M1AXV4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012559 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-30
Identity = 72/130 (55.38%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 63  SASGNSNDGVRGDGGGGGGD-------DDSKLLDGEAEDNATLSADAIVLDVGGMMCTGC 122
           S  GN N G  GDGGGG GD       ++  ++    ED + LS+D I+LDV GM C GC
Sbjct: 102 SGGGNDNPGGNGDGGGGNGDGATDGGKENPSVVAETGEDISALSSDVIILDVTGMTCGGC 161

Query: 123 STSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSK 182
           ++SVK+ILESQP VS ATV+L +ETA VW V++AK+ PNW+++LGEALAKHL+TCGF S 
Sbjct: 162 ASSVKRILESQPQVSSATVNLTTETAIVWPVSDAKVVPNWQKQLGEALAKHLSTCGFKSN 221

Query: 183 AQGQGAIGGD 186
            +G+GAI G+
Sbjct: 222 VRGEGAIEGE 231

[Close]

BLAST of Cp4.1LG04g07080 vs. TrEMBL
Match: A0A0V0HYA7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.7e-30
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 1


Query: 63  SASGNSNDGVRGDGGGGGGDDDSKLLDGE---------AEDNATLSADAIVLDVGGMMCT 122
           +ASG  ND   G+GGGGGG+ D     G+          ED + LS+D I+LDV GM C 
Sbjct: 100 AASGGGNDNPGGNGGGGGGNGDGATDGGKENPSVVAETGEDISALSSDVIILDVTGMTCG 159

Query: 123 GCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFS 182
           GC++SVK+ILESQP VS ATV+L +ETA VW V++AK+ PNW+++LGEALAKHL+TCGF 
Sbjct: 160 GCASSVKRILESQPQVSSATVNLTTETAIVWPVSDAKVVPNWQKQLGEALAKHLSTCGFK 219

Query: 183 SKAQGQGAIGGD 186
           S  +G+GAI G+
Sbjct: 220 SNVRGEGAIEGE 231

[Close]

BLAST of Cp4.1LG04g07080 vs. TAIR10
Match: AT4G33520.2 (AT4G33520.2 P-type ATP-ase 1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-26
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 1


Query: 59  FIPISASGNSN----DGVRGDGGGGG---GDDDSKLLDGEAEDNATLSADAIVLDVGGMM 118
           F  IS+ G S     +G  G GGGGG   GD  SKL    ++  +  S+D I+LDVGGM 
Sbjct: 99  FRSISSGGGSGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDVGGMT 158

Query: 119 CTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 175
           C GCS SVKKILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HLT CG
Sbjct: 159 CGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHLTNCG 218

[Close]

BLAST of Cp4.1LG04g07080 vs. TAIR10
Match: AT5G21930.1 (AT5G21930.1 P-type ATPase of Arabidopsis 2)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1


Query: 89  DGEAEDNATLSADA-IVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVA 148
           +   E   ++++D  I+LDV GMMC GC   VK +L S   V+ A V++ +ETA V    
Sbjct: 63  ESSIESVKSITSDTPILLDVSGMMCGGCVARVKSVLMSDDRVASAVVNMLTETAAVKFKP 122

Query: 149 EAKITPNWREELGEALAKHLTTCGFSSKAQGQG 181
           E ++T     +  E+LAK LT  GF +K +  G
Sbjct: 123 EVEVT----ADTAESLAKRLTESGFEAKRRVSG 151

[Close]

BLAST of Cp4.1LG04g07080 vs. NCBI nr
Match: gi|659110400|ref|XP_008455207.1| (PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 3.3e-55
Identity = 133/197 (67.51%), Postives = 146/197 (74.11%), Query Frame = 1


Query: 1   MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFI 60
           MDS +SLMASN+ L T  TI     R +FT  + IS  S    F LR A PPIHR  KF+
Sbjct: 1   MDSAISLMASNSFLSTLSTIP----RSSFTSISTISTLS----FPLRAALPPIHRRQKFV 60

Query: 61  PISASGNSNDGVRGD--GGGGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGM 120
            + ASGN N GVRG+  GGGGGGDD        DSKLL GEA+D+ATLSAD IV+ VGGM
Sbjct: 61  SVFASGNGNGGVRGESGGGGGGGDDGGPNGSDVDSKLLAGEADDDATLSADVIVIGVGGM 120

Query: 121 MCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTC 180
            C GC  SVK+ILESQP VSHA+VDLASETA VW VAEAKITPNWREELG ALAKHLTTC
Sbjct: 121 TCKGCCASVKRILESQPQVSHASVDLASETAIVWPVAEAKITPNWREELGVALAKHLTTC 180

Query: 181 GFSSKAQGQGAIGGDVS 188
           GFSSK QGQGAIGGDV+
Sbjct: 181 GFSSKVQGQGAIGGDVT 189

[Close]

BLAST of Cp4.1LG04g07080 vs. NCBI nr
Match: gi|449438195|ref|XP_004136875.1| (PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.0e-52
Identity = 131/197 (66.50%), Postives = 140/197 (71.07%), Query Frame = 1


Query: 1   MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFI 60
           MDS +SLMASN+ L T  +             T +S  S  S F  R A PPIHR  KFI
Sbjct: 1   MDSAISLMASNSFLSTLSS-------------TSVSTISTLS-FPRRAALPPIHRRQKFI 60

Query: 61  PISASGNSNDGVRGD--GGGGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGM 120
            I ASGN N GVRG+  GGGGGGDD        DSKLL GEA+D+ATLSAD IVL V GM
Sbjct: 61  SIFASGNGNGGVRGESGGGGGGGDDGGPKGSDVDSKLLAGEADDDATLSADVIVLGVEGM 120

Query: 121 MCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTC 180
            C GC  SVK+ILESQP VSHA+VDLASETA VW VAEAKITPNWREELG ALAKHLTTC
Sbjct: 121 TCKGCCASVKRILESQPQVSHASVDLASETAIVWPVAEAKITPNWREELGVALAKHLTTC 180

Query: 181 GFSSKAQGQGAIGGDVS 188
           GFSSK QGQGAIGGDVS
Sbjct: 181 GFSSKVQGQGAIGGDVS 183

[Close]

BLAST of Cp4.1LG04g07080 vs. NCBI nr
Match: gi|566150150|ref|XP_006369333.1| (hypothetical protein POPTR_0001s21260g [Populus trichocarpa])

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 98/218 (44.95%), Postives = 128/218 (58.72%), Query Frame = 1


Query: 1   MDSLLSLMASNAPLFTSPTITL--------SFSRPNFTHPTFISPFSV---------TSP 60
           MDS L++ A+  PLFT   +          SF R + +    +   S+         +SP
Sbjct: 1   MDSALAISATALPLFTLSKVNRHFITHNARSFLRHSSSQRGTLRLSSICSHNNNALASSP 60

Query: 61  FSLRTAAPPIHRPSKFIPISAS--------GNSNDGVRGDGGGGGGDD----DSKLLDGE 120
           F L T  P + R  + +  SA+        G    G  G GGGGGG D    +S  + G 
Sbjct: 61  F-LCTVVPLLRRRLECVSSSAASFGTSSGGGGGGGGEFGSGGGGGGSDGGDAESNSVAGA 120

Query: 121 --AEDNATLSADAIVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAEA 180
             AE+ + LS D I+LDVGGM C GC+ SVK+ILESQP VS A+V+LA+ETA VW V+EA
Sbjct: 121 VGAEEVSALSPDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLATETAIVWPVSEA 180

Query: 181 KITPNWREELGEALAKHLTTCGFSSKAQGQGAIGGDVS 188
           K+ PNW++ELGEALAKHLT+CGF S  +GQGA  GD+S
Sbjct: 181 KVVPNWQKELGEALAKHLTSCGFMSNLRGQGATEGDIS 217

[Close]

BLAST of Cp4.1LG04g07080 vs. NCBI nr
Match: gi|720042495|ref|XP_010269257.1| (PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 1


Query: 41  TSPFSLRTAAPPIHR----PSKFIPISASGNSNDGVRGDGGGGG--------GDDDSKLL 100
           TS  +L  AAP   R     S     ++ G+ +D   G+GGGGG        G+  SK +
Sbjct: 71  TSLRNLHLAAPISSRMACISSSTASFASGGSGDDTNEGNGGGGGDSGDGSNNGETKSKSI 130

Query: 101 DGEAEDNATLSADAIVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFVWLVAE 160
            G++E+ +TLS+D I+L VGGM C GC+ SVK+ILESQP VS A+V+LASETA VW VAE
Sbjct: 131 GGDSEEVSTLSSDVIILHVGGMTCGGCAASVKRILESQPQVSSASVNLASETAIVWPVAE 190

Query: 161 AKITPNWREELGEALAKHLTTCGFSSKAQGQGAIGGDVS 188
            K+T NW+++LGE LAKHLT CGF S   GQGAI GD+S
Sbjct: 191 VKVTENWQQQLGETLAKHLTNCGFKSDLHGQGAI-GDIS 228

[Close]

BLAST of Cp4.1LG04g07080 vs. NCBI nr
Match: gi|658026794|ref|XP_008348820.1| (PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Malus domestica])

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 81/164 (49.39%), Postives = 103/164 (62.80%), Query Frame = 1


Query: 37  PFSVTSPFSLRTAAPPIHRPSKFIPISAS----GNSNDGVRGDGGGGGGDDDSKLLDGEA 96
           PFS +S  S+  A P + R  + +  SAS    G  N G  G+ GG GGD +     G+A
Sbjct: 63  PFSSSSLRSVCVAGPLLRRRLECVGSSASSFASGGGNGGFGGESGGSGGDGEGGSGGGDA 122

Query: 97  EDN---------ATLSADAIVLDVGGMMCTGCSTSVKKILESQPPVSHATVDLASETAFV 156
           +           + LS D IVLDVGGM C GC+ SVK+ILE+QP VS ATV+L +ETA V
Sbjct: 123 KSKVAATGGYEVSALSTDVIVLDVGGMTCGGCAASVKRILENQPQVSSATVNLTTETAIV 182

Query: 157 WLVAEAKITPNWREELGEALAKHLTTCGFSSKAQGQGAIGGDVS 188
           W V+EAK TPNW+++LGE LA  LT+CGF S  +GQGA  GD+S
Sbjct: 183 WPVSEAKATPNWQKQLGETLANQLTSCGFKSNLRGQGATEGDIS 226

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMA6_ARATH	7.9e-25	54.47	Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 P...	[more]
HMA8_ARATH	5.7e-07	37.63	Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 P...	[more]

BLAST of Cp4.1LG04g07080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Z3_CUCSA	1.4e-52	66.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062830 PE=4 SV=1	[more]
K4B287_SOLLC	1.5e-30	56.06	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
U5GWF6_POPTR	2.6e-30	44.95	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21260g PE=4 SV=1	[more]
M1AXV4_SOLTU	7.5e-30	55.38	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012559 PE=4 SV=1	[more]
A0A0V0HYA7_SOLCH	9.7e-30	55.30	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Cp4.1LG04g07080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33520.2	4.5e-26	54.47	P-type ATP-ase 1	[more]
AT5G21930.1	3.2e-08	37.63	P-type ATPase of Arabidopsis 2	[more]

BLAST of Cp4.1LG04g07080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110400\|ref\|XP_008455207.1\|	3.3e-55	67.51	PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Cucumis melo]	[more]
gi\|449438195\|ref\|XP_004136875.1\|	2.0e-52	66.50	PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Cucumis sativus]	[more]
gi\|566150150\|ref\|XP_006369333.1\|	3.7e-30	44.95	hypothetical protein POPTR_0001s21260g [Populus trichocarpa]	[more]
gi\|720042495\|ref\|XP_010269257.1\|	3.7e-30	52.20	PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like [Nelumbo nucifera...	[more]
gi\|658026794\|ref\|XP_008348820.1\|	4.1e-29	49.39	PREDICTED: copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Malus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **INTERPRO**
Term	Definition
IPR017969	Heavy-metal-associated_CS
IPR006121	HMA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0030001	metal ion transport
biological_process	GO:0060003	copper ion export
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019829	cation-transporting ATPase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004008	copper-exporting ATPase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g07080.1	Cp4.1LG04g07080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 104..165 score: 4.
IPR006121	Heavy metal-associated domain, HMA	PROFILE	PS50846	HMA_2	coord: 102..176 score: 13
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 103..152 score: 1.31
IPR017969	Heavy-metal-associated, conserved site	PROSITE	PS01047	HMA_1	coord: 107..136 scor
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 103..174 score: 3.7
None	No IPR available	PANTHER	PTHR24093	FAMILY NOT NAMED	coord: 82..174 score: 3.6
None	No IPR available	PANTHER	PTHR24093:SF357	SUBFAMILY NOT NAMED	coord: 82..174 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g07080	Cucsa.217930	Cucumber (Gy14) v1	cgycpeB0602
Cp4.1LG04g07080	CmaCh11G016490	Cucurbita maxima (Rimu)	cmacpeB154
Cp4.1LG04g07080	CmaCh19G002550	Cucurbita maxima (Rimu)	cmacpeB538
Cp4.1LG04g07080	Cla012847	Watermelon (97103) v1	cpewmB632
Cp4.1LG04g07080	Csa7G062830	Cucumber (Chinese Long) v2	cpecuB695
Cp4.1LG04g07080	MELO3C018643	Melon (DHL92) v3.5.1	cpemeB604
Cp4.1LG04g07080	ClCG09G015420	Watermelon (Charleston Gray)	cpewcgB578
Cp4.1LG04g07080	CSPI07G05540	Wild cucumber (PI 183967)	cpecpiB697
Cp4.1LG04g07080	Lsi03G007630	Bottle gourd (USVL1VR-Ls)	cpelsiB544
Cp4.1LG04g07080	MELO3C018643.2	Melon (DHL92) v3.6.1	cpemedB715
Cp4.1LG04g07080	CsaV3_7G006490	Cucumber (Chinese Long) v3	cpecucB0868
Cp4.1LG04g07080	Bhi05G000701	Wax gourd	cpewgoB0853
Cp4.1LG04g07080	CsGy7G005160	Cucumber (Gy14) v2	cgybcpeB969
Cp4.1LG04g07080	Carg24508	Silver-seed gourd	carcpeB1345
Cp4.1LG04g07080	Carg26456	Silver-seed gourd	carcpeB0522

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g07080	Cp4.1LG15g02300	Cucurbita pepo (Zucchini)	cpecpeB268

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g07080	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g07080	Cucurbita moschata (Rifu)	cmocpeB493