Carg26456 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26456
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	copper-transporting ATPase PAA1, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_271 : 66690 .. 68473 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCTCTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTTCTTTCTCGCTGCGCACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCCGCGGATGCGATCGTTCTGGATGTTGGAGTGCGAGATAGTTCTCTCCCTTTTCAGTTTTCGATTGGTGCTAATTTTGATGGATTCTGTGCTGTTTGTAATAGGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGGTGGTTATATACTTATAGTCTCTTCTTATCTGTTTTACGTACTCTTTGGTGATCGTTACTTATCCTTAAATACTTGAGTTGCTGATTGAACTGAGCATGTAGGAACTCTGTACGAGTTTATTGTTTGATTGATATCTAAGAATCAGAGATTGAAGAGGGATGGGAACAGGGTATAATAGCATTTTCAGTATATAATTGAATTGTTTCAGATTTCTAGTTGGACTTGTATAATCTAACAGAGTAATTGAATTTAGGCATAATCTACGGGGAATCATGAACCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTCATCGGTTTGCTTTTGGTTTCTCCGAAAGCTCTCGTGCCAATGGAGATGTACTCTTAATTAGCCAACGTGGGACTCCCTCCCAACAATCCTCCCTTCGAGCAAAGTACACCATAGAGTCTCCTTTGAGGCCTATGGAGCCCTCGAACAGCCTCCCCTTAATCGAGGATTGACTACTTTCTCTAGAGCCCTCGAACTAAGTACACCATTTGTTTGACACTTGAGTCACTTTTGATTACACCTCCGAGGCTCACCACTTCTTTGTTCAAAATTTGAGGATTCTATTGACCTGACTAAGTTAAGGGCATAACTCTGATACCATGTTAGAAACTACGGAATCAAGTTGTAATTGTATGAGCTCAATAGGGTACCATTTGTAACATGACTCTAATACCATATTAGGAATCACAAACCTCCACAATGGTATGATATTGTCAACTTTGAGCATAAGCTCTCCTGGTTTTGCTTTTGGTTTCCACAAAAGGCCTCATACCAATGGAGATAGTGTTCCTTATAAACCCCATGATCTTCCTCTTAATTAGTCAATGTGGGGACTACTCTTTTCAATAATCCTCAACAATTGTTGAGAATTGTTGGGAGAGGAGTCCCGCATCGGCTGGGTGATCATGAGTTTATAAGTAAGGAACACTATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAACAACAAAGCCATAAGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGGTCGTAGTTCGTAACAACATTGGAGTTTTACACGCTTTAGTATGATATTAAAGCTAGACATACCACTGAAAATTTCATTTCTTTCCCGATTAATATTGATCATTTGTTATCATGGACAGCCGCCAGTATCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTTAG

mRNA sequence

ATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCTCTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTTCTTTCTCGCTGCGCACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCCGCGGATGCGATCGTTCTGGATGTTGGAGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGCCGCCAGTATCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTTAG

Coding sequence (CDS)

ATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCTCTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCTCTGTTACCTCTTCTTTCTCGCTGCGCACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACGCTGTCCGCGGATGCGATCGTTCTGGATGTTGGAGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGCCGCCAGTATCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCAAGGTTAG

Protein sequence

MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFIPISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG

Homology

[Close]

BLAST of Carg26456 vs. NCBI nr
Match: XP_022988963.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 3.9e-86
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDSLLSLMASNAPLF+SPPITLSFSRPNFTHPTFISPF+VTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 60

Query: 61  PISASGNGNDGVRGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120
           PISASGNGNDGVRGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI
Sbjct: 61  PISASGNGNDGVRGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120

Query: 121 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 177
           LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKA G
Sbjct: 121 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHG 176

[Close]

BLAST of Carg26456 vs. NCBI nr
Match: XP_022927930.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 317.0 bits (811), Expect = 4.0e-83
Identity = 171/177 (96.61%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDSLLSLMASNAPLF+SPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60

Query: 61  PISASGNGNDGVRGDGXXXXXXSKLLDG-EAEDNATLSADAIVLDVGGMMCTGCSTSVKR 120
           PISASGNGNDGVRGD XXXXXX  LLDG EAEDNATLSAD IVLDVGGMMCTGCSTSVKR
Sbjct: 61  PISASGNGNDGVRGDXXXXXXXXXLLDGEEAEDNATLSADVIVLDVGGMMCTGCSTSVKR 120

Query: 121 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 177
           ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG
Sbjct: 121 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 177

[Close]

BLAST of Carg26456 vs. NCBI nr
Match: XP_023529553.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 2.4e-80
Identity = 167/178 (93.82%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDSLLSLMASNAPLF+SP ITLSFSRPNFTHPTFISPFSVTS FSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFI 60

Query: 61  PISASGNGNDGVRGD--GXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK 120
           PISASGN NDGVRGD   XXXXXX   LDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK
Sbjct: 61  PISASGNSNDGVRGDXXXXXXXXXXXXLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK 120

Query: 121 RILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 177
           +ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG
Sbjct: 121 KILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 178

[Close]

BLAST of Carg26456 vs. NCBI nr
Match: XP_022142006.1 (copper-transporting ATPase PAA1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 126/187 (67.38%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSS--FSLRTAAPPIHRPSK 60
           MDS +SL+ASN PL S   +   FS PNFTH T ISP S   S    LR A PP+HR  K
Sbjct: 1   MDSAISLIASNLPLSS---LNFRFSGPNFTHFTCISPISAIHSPTVPLRAAVPPLHRRFK 60

Query: 61  FIPISASGNGNDGVR---------GDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMM 120
           F+   ASGNGN GVR            XXXX  SKLL  EAE +ATLSAD IVLDVGGM 
Sbjct: 61  FVSKFASGNGNGGVRDXXXXXXXXXXXXXXXAESKLLAEEAEGDATLSADVIVLDVGGMT 120

Query: 121 CTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 177
           C GCS SVKRILESQP VS A+VDLASETA VW VAEAKITPNWREELGEALAKHLTTCG
Sbjct: 121 CMGCSASVKRILESQPQVSQASVDLASETAVVWPVAEAKITPNWREELGEALAKHLTTCG 180

[Close]

BLAST of Carg26456 vs. NCBI nr
Match: XP_022963523.1 (copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 1.9e-48
Identity = 126/187 (67.38%), Postives = 132/187 (70.59%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDS LS+MASNAPLF+   IT SFS  NFTH   ISP S T SFSLR A PP+HR  KFI
Sbjct: 1   MDSALSVMASNAPLFTLSTITRSFSTLNFTHSLSISPIS-TLSFSLRAAVPPLHRRHKFI 60

Query: 61  PISA-----------SGNGNDGVRGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGMM 120
             S+                       XXXXXX  LL GEAED+A LSADAIVL VGGM 
Sbjct: 61  SNSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGEAEDDAALSADAIVLGVGGMT 120

Query: 121 CTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 177
           C GCS SVKRILESQP VSHA+VDLASETA VW  AEAKITPNWREELGEALAKHLTTCG
Sbjct: 121 CKGCSASVKRILESQPQVSHASVDLASETAVVWPAAEAKITPNWREELGEALAKHLTTCG 180

[Close]

BLAST of Carg26456 vs. TAIR10
Match: AT4G33520.2 (P-type ATP-ase 1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-23
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 83  SKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVW 142
           SKL    ++  +  S+D I+LDVGGM C GCS SVK+ILESQP V+ A+V+L +ETA VW
Sbjct: 132 SKLGANASDGVSVPSSDIIILDVGGMTCGGCSASVKKILESQPQVASASVNLTTETAIVW 191

Query: 143 LVAEAKITPNWREELGEALAKHLTTCGFSS 173
            V EAK  P+W++ LGE LA HLT CGF S
Sbjct: 192 PVPEAKSVPDWQKSLGETLANHLTNCGFQS 221

[Close]

BLAST of Carg26456 vs. TAIR10
Match: AT5G21930.1 (P-type ATPase of Arabidopsis 2)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 101 IVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEA 160
           I+LDV GMMC GC   VK +L S   V+ A V++ +ETA V    E ++T     +  E+
Sbjct: 78  ILLDVSGMMCGGCVARVKSVLMSDDRVASAVVNMLTETAAVKFKPEVEVT----ADTAES 137

Query: 161 LAKHLTTCGFSSK 174
           LAK LT  GF +K
Sbjct: 138 LAKRLTESGFEAK 146

[Close]

BLAST of Carg26456 vs. Swiss-Prot
Match: sp|Q9SZC9|HMA6_ARATH (Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAA1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-22
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 83  SKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVW 142
           SKL    ++  +  S+D I+LDVGGM C GCS SVK+ILESQP V+ A+V+L +ETA VW
Sbjct: 132 SKLGANASDGVSVPSSDIIILDVGGMTCGGCSASVKKILESQPQVASASVNLTTETAIVW 191

Query: 143 LVAEAKITPNWREELGEALAKHLTTCGFSS 173
            V EAK  P+W++ LGE LA HLT CGF S
Sbjct: 192 PVPEAKSVPDWQKSLGETLANHLTNCGFQS 221

[Close]

BLAST of Carg26456 vs. Swiss-Prot
Match: sp|B9DFX7|HMA8_ARATH (Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAA2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-07
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 101 IVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEA 160
           I+LDV GMMC GC   VK +L S   V+ A V++ +ETA V    E ++T     +  E+
Sbjct: 78  ILLDVSGMMCGGCVARVKSVLMSDDRVASAVVNMLTETAAVKFKPEVEVT----ADTAES 137

Query: 161 LAKHLTTCGFSSK 174
           LAK LT  GF +K
Sbjct: 138 LAKRLTESGFEAK 146

[Close]

BLAST of Carg26456 vs. TrEMBL
Match: tr|A0A0A0K5Z3|A0A0A0K5Z3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062830 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 117/188 (62.23%), Postives = 123/188 (65.43%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDS +SLMASN+ L      TLS         T +S  S T SF  R A PPIHR  KFI
Sbjct: 1   MDSAISLMASNSFL-----STLS--------STSVSTIS-TLSFPRRAALPPIHRRQKFI 60

Query: 61  PISASGNGNDGV------------RGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGM 120
            I ASGNGN GV                X     SKLL GEA+D+ATLSAD IVL V GM
Sbjct: 61  SIFASGNGNGGVXXXXXXXXXXXXXXXXXGSDVDSKLLAGEADDDATLSADVIVLGVEGM 120

Query: 121 MCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTC 177
            C GC  SVKRILESQP VSHA+VDLASETA VW VAEAKITPNWREELG ALAKHLTTC
Sbjct: 121 TCKGCCASVKRILESQPQVSHASVDLASETAIVWPVAEAKITPNWREELGVALAKHLTTC 174

[Close]

BLAST of Carg26456 vs. TrEMBL
Match: tr|A0A1S3BZZ1|A0A1S3BZZ1_CUCME (copper-transporting ATPase PAA1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495426 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 112/188 (59.57%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60
           MDS +SLMASN+ L +   I                      SF LR A PPIHR  KF+
Sbjct: 1   MDSAISLMASNSFLSTLSTIP--------RXXXXXXXXXXXXSFPLRAALPPIHRRQKFV 60

Query: 61  PISASGNGNDGV------------RGDGXXXXXXSKLLDGEAEDNATLSADAIVLDVGGM 120
            + ASGNGN GV                XXX   SKLL GEA+D+ATLSAD IV+ VGGM
Sbjct: 61  SVFASGNGNGGVXXXXXXXXXXXXXXXXXXXDVDSKLLAGEADDDATLSADVIVIGVGGM 120

Query: 121 MCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTC 177
            C GC  SVKRILESQP VSHA+VDLASETA VW VAEAKITPNWREELG ALAKHLTTC
Sbjct: 121 TCKGCCASVKRILESQPQVSHASVDLASETAIVWPVAEAKITPNWREELGVALAKHLTTC 180

[Close]

BLAST of Carg26456 vs. TrEMBL
Match: tr|B9SZS1|B9SZS1_RICCO (Copper-transporting atpase paa1, putative OS=Ricinus communis OX=3988 GN=RCOM_0460580 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-26
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 83  SKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVW 142
           S L  G  ED + LS D I+LDVGGM C GC+ SVKRILESQP VS ATV+L +ETA VW
Sbjct: 112 SNLAAGGTEDVSALSPDVIILDVGGMTCGGCAASVKRILESQPQVSSATVNLTTETAVVW 171

Query: 143 LVAEAKITPNWREELGEALAKHLTTCGFSS 173
            V+EA + PNW++ELGEALAKHLTTCGFSS
Sbjct: 172 PVSEATVIPNWKKELGEALAKHLTTCGFSS 201

[Close]

BLAST of Carg26456 vs. TrEMBL
Match: tr|A0A1U8ANW6|A0A1U8ANW6_NELNU (copper-transporting ATPase PAA1, chloroplastic-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104605979 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.7e-26
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 83  SKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVW 142
           SK + G++E+ +TLS+D I+L VGGM C GC+ SVKRILESQP VS A+V+LASETA VW
Sbjct: 127 SKSIGGDSEEVSTLSSDVIILHVGGMTCGGCAASVKRILESQPQVSSASVNLASETAIVW 186

Query: 143 LVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 177
            VAE K+T NW+++LGE LAKHLT CGF S   G
Sbjct: 187 PVAEVKVTENWQQQLGETLAKHLTNCGFKSDLHG 220

[Close]

BLAST of Carg26456 vs. TrEMBL
Match: tr|A0A2P5E8N6|A0A2P5E8N6_9ROSA (P-type ATPase OS=Trema orientalis OX=63057 GN=TorRG33x02_223170 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 59/88 (67.05%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 85  LLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLV 144
           L  G AE+ + ++ D I+LDVGGM C GC+ SVKRILESQP VS A+V+LA+ETA VW V
Sbjct: 131 LAAGGAEEVSAVTTDVIILDVGGMTCGGCAASVKRILESQPQVSSASVNLATETAIVWPV 190

Query: 145 AEAKITPNWREELGEALAKHLTTCGFSS 173
           AEAK+ PNW+++LGEALAKHLTTCGF S
Sbjct: 191 AEAKVVPNWQQQLGEALAKHLTTCGFKS 218

The following BLAST results are available for this feature:

BLAST of Carg26456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988963.1	3.9e-86	98.30	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022927930.1	4.0e-83	96.61	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023529553.1	2.4e-80	93.82	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022142006.1	1.3e-49	67.38	copper-transporting ATPase PAA1, chloroplastic-like [Momordica charantia]	[more]
XP_022963523.1	1.9e-48	67.38	copper-transporting ATPase PAA1, chloroplastic-like isoform X2 [Cucurbita moscha...	[more]

BLAST of Carg26456 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33520.2	1.5e-23	57.78	P-type ATP-ase 1	[more]
AT5G21930.1	1.4e-08	43.84	P-type ATPase of Arabidopsis 2	[more]

BLAST of Carg26456 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZC9\|HMA6_ARATH	2.7e-22	57.78	Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|B9DFX7\|HMA8_ARATH	2.5e-07	43.84	Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg26456 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5Z3\|A0A0A0K5Z3_CUCSA	4.6e-43	62.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062830 PE=4 SV=1	[more]
tr\|A0A1S3BZZ1\|A0A1S3BZZ1_CUCME	1.7e-42	59.57	copper-transporting ATPase PAA1, chloroplastic-like OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|B9SZS1\|B9SZS1_RICCO	3.9e-26	68.89	Copper-transporting atpase paa1, putative OS=Ricinus communis OX=3988 GN=RCOM_04...	[more]
tr\|A0A1U8ANW6\|A0A1U8ANW6_NELNU	6.7e-26	63.83	copper-transporting ATPase PAA1, chloroplastic-like isoform X1 OS=Nelumbo nucife...	[more]
tr\|A0A2P5E8N6\|A0A2P5E8N6_9ROSA	1.5e-25	67.05	P-type ATPase OS=Trema orientalis OX=63057 GN=TorRG33x02_223170 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036163	HMA_dom_sf
IPR017969	Heavy-metal-associated_CS
IPR006121	HMA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26456-RA	Carg26456-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 102..162 e-value: 6.9E-8 score: 32.7
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 100..174 score: 13.636
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 102..163 e-value: 1.01534E-10 score: 53.3785
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 99..175 e-value: 1.9E-14 score: 55.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..86
None	No IPR available	PANTHER	PTHR43520:SF10	SUBFAMILY NOT NAMED	coord: 90..174
None	No IPR available	PANTHER	PTHR43520	FAMILY NOT NAMED	coord: 90..174
IPR017969	Heavy-metal-associated, conserved site	PROSITE	PS01047	HMA_1	coord: 105..134
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	SSF55008	HMA, heavy metal-associated domain	coord: 101..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26456	Cla012847	Watermelon (97103) v1	carwmB0364
Carg26456	Csa7G062830	Cucumber (Chinese Long) v2	carcuB0399
Carg26456	MELO3C018643	Melon (DHL92) v3.5.1	carmeB0375
Carg26456	ClCG09G015420	Watermelon (Charleston Gray)	carwcgB0363
Carg26456	CSPI07G05540	Wild cucumber (PI 183967)	carcpiB0404
Carg26456	Cucsa.217930	Cucumber (Gy14) v1	carcgyB0430
Carg26456	Lsi03G007630	Bottle gourd (USVL1VR-Ls)	carlsiB338
Carg26456	Cp4.1LG04g07080	Cucurbita pepo (Zucchini)	carcpeB0522
Carg26456	Cp4.1LG15g02300	Cucurbita pepo (Zucchini)	carcpeB0521
Carg26456	CsGy7G005160	Cucumber (Gy14) v2	carcgybB0379
Carg26456	MELO3C018643.2	Melon (DHL92) v3.6.1	carmedB0380
Carg26456	CsaV3_7G006490	Cucumber (Chinese Long) v3	carcucB0402
Carg26456	Cla97C09G177410	Watermelon (97103) v2	carwmbB0390
Carg26456	Bhi05G000701	Wax gourd	carwgoB0455

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26456	Carg24508	Silver-seed gourd	carcarB400

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26456	Cucurbita maxima (Rimu)	carcmaB0524
Carg26456	Cucurbita moschata (Rifu)	carcmoB0507