Cp4.1LG03g15870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g15870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 13531994 .. 13532371 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCACAAGGGCAAGACCCAGAAGGCGCAGCAGCCAAATGCAATAAACATCGCGGGAGAAAATGTTGGGGCGGTGATGGAAATTGTCGAGTCCTCAAAAGGGGAAGGGGGACATGTTGTAAAGAAGAAAGAGACGGCGAGGGGTGTAGTGAGCAACGTCGACGACACTCTCAATGATCAACACAAGGACGCTTCTAAACACCACAAGCCCGGCGCCCAAAAAGCACCCGCTTCCTCATCGCTGCCGACAACCACTTTTCTGAACAACAATTTTCAAACCCTAAACAATTCCCTTGTTTTCGATGCATCTTTGGCTCACCGTCACCCCGGTTTGCACCTCGCTTTCTCCCGGAAGCAACACCACGGAATACTCTAG

mRNA sequence

ATGGTCCACAAGGGCAAGACCCAGAAGGCGCAGCAGCCAAATGCAATAAACATCGCGGGAGAAAATGTTGGGGCGGTGATGGAAATTGTCGAGTCCTCAAAAGGGGAAGGGGGACATGTTGTAAAGAAGAAAGAGACGGCGAGGGGTGTAGTGAGCAACGTCGACGACACTCTCAATGATCAACACAAGGACGCTTCTAAACACCACAAGCCCGGCGCCCAAAAAGCACCCGCTTCCTCATCGCTGCCGACAACCACTTTTCTGAACAACAATTTTCAAACCCTAAACAATTCCCTTGTTTTCGATGCATCTTTGGCTCACCGTCACCCCGGTTTGCACCTCGCTTTCTCCCGGAAGCAACACCACGGAATACTCTAG

Coding sequence (CDS)

ATGGTCCACAAGGGCAAGACCCAGAAGGCGCAGCAGCCAAATGCAATAAACATCGCGGGAGAAAATGTTGGGGCGGTGATGGAAATTGTCGAGTCCTCAAAAGGGGAAGGGGGACATGTTGTAAAGAAGAAAGAGACGGCGAGGGGTGTAGTGAGCAACGTCGACGACACTCTCAATGATCAACACAAGGACGCTTCTAAACACCACAAGCCCGGCGCCCAAAAAGCACCCGCTTCCTCATCGCTGCCGACAACCACTTTTCTGAACAACAATTTTCAAACCCTAAACAATTCCCTTGTTTTCGATGCATCTTTGGCTCACCGTCACCCCGGTTTGCACCTCGCTTTCTCCCGGAAGCAACACCACGGAATACTCTAG

Protein sequence

MVHKGKTQKAQQPNAINIAGENVGAVMEIVESSKGEGGHVVKKKETARGVVSNVDDTLNDQHKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSRKQHHGIL
Homology
[Close]
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 3   HKGKTQKAQQPNAINIAGENVGAVMEIVESSKGEGGHVVKK-KETARGVVSNVDDTLNDQ 62
           HKG+ Q    PNAINI GENVGAVMEIVESSK EGGH++KK KETARG+++N +D  NDQ
Sbjct: 148 HKGQLQ----PNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNN-NDMANDQ 207

Query: 63  HKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSR--- 122
           + +AS        KAP +SS+PT TFLN+NFQ++NNSL+++A+L HR PGLHLAFSR   
Sbjct: 208 NNEAS--------KAP-NSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPT 267

[Close]
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 4   KGKTQKAQQPNAINIAGENVGAVMEIVESSKGE--GGHVVKKKETARGVVSNVDDTLNDQ 63
           K   QK Q+P  + + G NVGAVME+ +SS G   GG  +KKKET        DD   D 
Sbjct: 172 KSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETE-------DDGDVDG 231

Query: 64  HKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAF 117
           +    K  K G +K P     P + F+N+NFQ++NNSL+FD+S  HR PGLHL+F
Sbjct: 232 YGHEDK--KTGRKKKP-----PISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSF 272

[Close]
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1 

Query: 12  QPNAINIAGENVGAVMEIVESSKGEGGHVVKKKETARGVVSNVDDTLNDQHKDASKHHKP 71
           Q + INI GENVGAVM I +SS  +G  V+KKK T                   SK ++ 
Sbjct: 208 QSDVINIKGENVGAVMHITQSS--DGSEVIKKKPTV----------------GQSKENEE 267

Query: 72  GAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAF-SRKQHHG 124
              K+  +S+ P  +F+N+NFQ +NNS+++++SL+HR PGLHLAF S+K  HG
Sbjct: 268 KTNKS--NSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSKHG 300

[Close]
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match: W9RNX6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023460 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 16  INIAGENVGAVMEIVESSK--GEGGHVVKKKETARGVVSNVDDTLN-DQHKDASKHHKPG 75
           I +AGEN GA+ME+++S    GE    + K  T R V S+  +  + D   D  K  K  
Sbjct: 357 ITLAGENKGALMELIKSPNKTGERSRYLHKNGTGRVVGSDGKNAAHSDSDSDDGKAKKDK 416

Query: 76  AQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSRK 120
           +QK  A + LP T F+N+N Q +NNS+++++S  H  PG+HLA +RK
Sbjct: 417 SQKGKAKNGLPMTAFMNSNVQGINNSIMYNSSCTHHDPGVHLALTRK 463

[Close]
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match: M5XHL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024582mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-09
Identity = 45/121 (37.19%), Postives = 61/121 (50.41%), Query Frame = 1 

Query: 16  INIAGENVGAVMEIVESSK----GEGGHVVKKKETARGVVSNVDDTLNDQHKDAS----- 75
           I IAGEN GA ME+ +S +    GE    + KK   + V     D  N     +S     
Sbjct: 339 ITIAGENRGAFMELKQSPQKHGLGEQSQYLCKKGNGKTVTGTQSDQNNSSSSSSSSGEEG 398

Query: 76  --------KHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSR 120
                   K  K G     ++S+ PT  F+N+N Q +NNS+V++ SL H  PG+HLAFSR
Sbjct: 399 KGKSKSKDKSLKAGKAAGKSASAQPTRAFMNSNVQGINNSIVYNTSLTHHDPGVHLAFSR 458

[Close]
BLAST of Cp4.1LG03g15870 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 1 

Query: 7   TQKAQQPNAINIAGENVGAVMEIVESSKGE--GGHVVKKKETARGV------VSNVDDTL 66
           ++       I IAGEN GAVMEI+ S +G   GG        + G       + +   + 
Sbjct: 256 SENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSSSS 315

Query: 67  NDQHKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSR 120
           +D+ +   K  K    K   +S+LP   F+N+N Q +NNS+V++++ +H  PG+HL  SR
Sbjct: 316 SDEGEGKKKTTKNVPNKG--NSNLPMKAFMNSNVQMINNSIVYNSTASHHDPGVHLKISR 374

[Close]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.5e-27
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 3   HKGKTQKAQQPNAINIAGENVGAVMEIVESSKGEGGHVVKK-KETARGVVSNVDDTLNDQ 62
           HKG+ Q    PNAINI GENVGAVMEIVESSK EGGH++KK KETARG+++N +D  NDQ
Sbjct: 148 HKGQLQ----PNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNN-NDMANDQ 207

Query: 63  HKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSR--- 122
           + +AS        KAP +SS+PT TFLN+NFQ++NNSL+++A+L HR PGLHLAFSR   
Sbjct: 208 NNEAS--------KAP-NSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLHLAFSRNPT 267

[Close]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-27
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 7   TQKAQQPNAINIAGENVGAVMEIVESSKGEGGHVVKK-KETARGVVSNVDDTLNDQHKDA 66
           + K QQPNAINI GENVGAVMEIVESSK EGGH++KK KETARG+++N +D  NDQ+ +A
Sbjct: 147 SHKGQQPNAINIKGENVGAVMEIVESSKREGGHMIKKIKETARGILNN-NDMANDQNNEA 206

Query: 67  SKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSR------- 123
           SK           +SS+PT TFLN+NFQ++NNSL+++A+L +R PGLHL+FSR       
Sbjct: 207 SK---------TTNSSMPTNTFLNSNFQSVNNSLLYNANLTYRDPGLHLSFSRNPTGDRF 265

[Close]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 8   QKAQQPNAINIAGENVGAVMEIVESSKGE--GGHVVKKKETARGVVSNVDDTLNDQHKDA 67
           QK Q+P  I + G NVGAVMEI +SS G   GG  +KK ET      +V D     H+D 
Sbjct: 183 QKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETLKKNET-----EDVGDVHGYGHEDK 242

Query: 68  SKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAF 117
               K   +K P     P T F+N+NFQ++NNSL+FD+S  HR PGLHLAF
Sbjct: 243 KTETK---KKEP-----PITAFMNSNFQSVNNSLLFDSSCNHRDPGLHLAF 280

[Close]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match: gi|449432018|ref|XP_004133797.1| (PREDICTED: atherin-like [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 1 

Query: 4   KGKTQKAQQPNAINIAGENVGAVMEIVESSKGE--GGHVVKKKETARGVVSNVDDTLNDQ 63
           K   QK Q+P  + + G NVGAVME+ +SS G   GG  +KKKET        DD   D 
Sbjct: 172 KSVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETE-------DDGDVDG 231

Query: 64  HKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAF 117
           +    K  K G +K P     P + F+N+NFQ++NNSL+FD+S  HR PGLHL+F
Sbjct: 232 YGHEDK--KTGRKKKP-----PISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSF 272

[Close]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match: gi|657968934|ref|XP_008376181.1| (PREDICTED: flocculation protein FLO11 [Malus domestica])

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = 1 

Query: 16  INIAGENVGAVMEIVESSK----GEGGHVVKKKETARGVVSNVDDTLN-----------D 75
           I +AGEN GA+ME+++S K    GE  H + KK   + ++ N  D  +            
Sbjct: 351 ITVAGENRGALMELIKSPKKHGSGEHSHYIHKKGNDKTLMGNQSDQSSYSGSSDSGSEEG 410

Query: 76  QHKDASKHHKPGAQKAPASSSLPTTTFLNNNFQTLNNSLVFDASLAHRHPGLHLAFSRK 120
           +HK   K H+ G     A++S PT+ F+N+N Q +NNS+V+++SL H  PG+HLAFS+K
Sbjct: 411 KHKSKDKSHRTGK----AAASKPTSAFMNSNVQGINNSIVYNSSLTHHDPGVHLAFSKK 465

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g15870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g15870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3R5_CUCSA1.8e-2758.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1[more]
A0A0A0L320_CUCSA3.6e-1245.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1[more]
A0A0A0L5T3_CUCSA1.4e-1143.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
W9RNX6_9ROSA1.5e-1040.19Uncharacterized protein OS=Morus notabilis GN=L484_023460 PE=4 SV=1[more]
M5XHL9_PRUPE8.3e-0937.19Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024582mg PE=4 SV=1[more]
BLAST of Cp4.1LG03g15870 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46630.13.9e-1033.06 unknown protein[more]
BLAST of Cp4.1LG03g15870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432014|ref|XP_004133795.1|2.5e-2758.96PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus][more]
gi|659074886|ref|XP_008437848.1|4.3e-2757.36PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo][more]
gi|659074890|ref|XP_008437851.1|1.4e-1247.75PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo][more]
gi|449432018|ref|XP_004133797.1|5.2e-1245.22PREDICTED: atherin-like [Cucumis sativus][more]
gi|657968934|ref|XP_008376181.1|5.2e-1238.66PREDICTED: flocculation protein FLO11 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g15870.1Cp4.1LG03g15870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 16..120
score: 2.7
NoneNo IPR availablePANTHERPTHR33472:SF1EXTENSIN-RELATEDcoord: 16..120
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g15870Cucsa.259500Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g15870CmaCh14G021290Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g15870CmaCh06G009850Cucurbita maxima (Rimu)cmacpeB834
Cp4.1LG03g15870CmoCh06G010190Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g15870CmoCh14G021920Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g15870Cla021125Watermelon (97103) v1cpewmB613
Cp4.1LG03g15870Csa3G119280Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g15870MELO3C005995Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g15870ClCG05G000580Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g15870CSPI03G07650Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g15870Lsi05G021560Bottle gourd (USVL1VR-Ls)cpelsiB506
Cp4.1LG03g15870MELO3C005995.2Melon (DHL92) v3.6.1cpemedB693
Cp4.1LG03g15870CsaV3_3G007790Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g15870Bhi01G000388Wax gourdcpewgoB0770
Cp4.1LG03g15870CsGy3G007790Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g15870Carg20912Silver-seed gourdcarcpeB1379
Cp4.1LG03g15870Carg25713Silver-seed gourdcarcpeB0179
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g15870Cp4.1LG08g00640Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g15870Cucumber (Chinese Long) v3cpecucB0774
Cp4.1LG03g15870Wax gourdcpewgoB0761
Cp4.1LG03g15870Cucurbita pepo (Zucchini)cpecpeB217
Cp4.1LG03g15870Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG03g15870Cucumber (Gy14) v1cgycpeB0574
Cp4.1LG03g15870Cucurbita maxima (Rimu)cmacpeB639
Cp4.1LG03g15870Cucurbita maxima (Rimu)cmacpeB839
Cp4.1LG03g15870Cucurbita moschata (Rifu)cmocpeB589
Cp4.1LG03g15870Wild cucumber (PI 183967)cpecpiB624
Cp4.1LG03g15870Cucumber (Chinese Long) v2cpecuB622
Cp4.1LG03g15870Watermelon (97103) v1cpewmB616
Cp4.1LG03g15870Melon (DHL92) v3.6.1cpemedB651