Cp4.1LG01g25780 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g25780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L27
Location	Cp4.1LG01 : 20956094 .. 20956912 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTTACAGCCATGAGTTTAAACCTAGTTGGTGCATTCAGAGGCCTCTCTCTGGTCTCTTCCTCTTCTTCTTCCTTCTTCAAGGGCGATTTCGGCTCCATTCAACCCCCTCCCAACCTCTCCGTCTCCTTTCCTAACAGATTCCCTTTAACCATCGAGAGTGCACACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGCGATTCTAAAGGCCAGAGGCTTGGCGTCAAAATCTTTGGTGATCAAGTCGCCAAGCCCGGTTCCATTATCGTCCGCCAGCGCGGAACCAAGGTAATTCCTCCATCCACTCATTTTTTTCACTTCAATTTTGAAGTGGATACCCGTTCCGCCCATCGTCTAGGGCATTTATGAGCATGGAATTGAGTTCTGTTGTTGTACCATTGTTTGTAATTGTTTGTAATTGAGTTCTGTTGTTGTACCATTCGTTTCAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAATTTGAAAAGTATGGACCTGACAAGAAGAAGGTTTCACTTCGAACCTAGACTTTTCAATATGTGGGTAGTGTAAGTTACATTGCAGGAATGAAGTGTTATACTTATTTGATTGCAGGTGAGTGTGTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGGAAGGAAGGCGTTGTTGCTCAAGCTCAACTAATATTAGCTTCCACTGATGCACAAGAAACCAATCCAATTTGCTGA

mRNA sequence

ATGCCTGTTACAGCCATGAGTTTAAACCTAGTTGGTGCATTCAGAGGCCTCTCTCTGGTCTCTTCCTCTTCTTCTTCCTTCTTCAAGGGCGATTTCGGCTCCATTCAACCCCCTCCCAACCTCTCCGTCTCCTTTCCTAACAGATTCCCTTTAACCATCGAGAGTGCACACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGCGATTCTAAAGGCCAGAGGCTTGGCGTCAAAATCTTTGGTGATCAAGTCGCCAAGCCCGGTTCCATTATCGTCCGCCAGCGCGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAATTTGAAAAGTATGGACCTGACAAGAAGAAGGTGAGTGTGTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGGAAGGAAGGCGTTGTTGCTCAAGCTCAACTAATATTAGCTTCCACTGATGCACAAGAAACCAATCCAATTTGCTGA

Coding sequence (CDS)

ATGCCTGTTACAGCCATGAGTTTAAACCTAGTTGGTGCATTCAGAGGCCTCTCTCTGGTCTCTTCCTCTTCTTCTTCCTTCTTCAAGGGCGATTTCGGCTCCATTCAACCCCCTCCCAACCTCTCCGTCTCCTTTCCTAACAGATTCCCTTTAACCATCGAGAGTGCACACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGCGATTCTAAAGGCCAGAGGCTTGGCGTCAAAATCTTTGGTGATCAAGTCGCCAAGCCCGGTTCCATTATCGTCCGCCAGCGCGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAATTTGAAAAGTATGGACCTGACAAGAAGAAGGTGAGTGTGTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGGAAGGAAGGCGTTGTTGCTCAAGCTCAACTAATATTAGCTTCCACTGATGCACAAGAAACCAATCCAATTTGCTGA

Protein sequence

MPVTAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILASTDAQETNPIC

Homology

[Close]

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot
Match: RK27_TOBAC (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.5e-71
Identity = 141/173 (81.50%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 5   AMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQP-PPNLSVSFPNRFPLTIESAHKKGAGS 64
           A+S +LVGAF+GLSL  +SSSSF KGDFG+  P  P  SVSFP + PLTIESAHKKGAGS
Sbjct: 2   AVSFSLVGAFKGLSL--ASSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGS 61

Query: 65  TKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 124
           TKNGRDS GQRLGVKIFGDQVAKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKF
Sbjct: 62  TKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 121

Query: 125 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQL 177
           EK+GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EGV+ Q+ +
Sbjct: 122 EKFGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQSSV 172

[Close]

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot
Match: RK27_ARATH (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-67
Identity = 140/197 (71.07%), Postives = 160/197 (81.22%), Query Frame = 1


Query: 4   TAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNR-----FPLTIESAHK 63
           T+MSLNL+GAF+GLSL  SS+SSF +GD  S  P  + +V+ P        PLTIESAHK
Sbjct: 5   TSMSLNLIGAFKGLSL--SSTSSFLRGDL-SFSPKTSFTVTLPLENLQAPIPLTIESAHK 64

Query: 64  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 123
           KGAGSTKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLID
Sbjct: 65  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLID 124

Query: 124 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---VVAQAQ 183
           GLVKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +   +
Sbjct: 125 GLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPE 184

Query: 184 LIL--ASTDAQETNPIC 191
           L+L  AS D  E NP C
Sbjct: 185 LVLASASVDDAEANPEC 198

[Close]

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot
Match: RK27_ORYSJ (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-62
Identity = 130/196 (66.33%), Postives = 154/196 (78.57%), Query Frame = 1


Query: 3   VTAMSLNLVGAFRGLSLVS----SSSSSFFKGDFGSIQPPPNLSVSFPNRFP---LTIES 62
           + +M+  LVGAF+G+SL S    SSS+SF + D  S+     + +  P   P   LTI+ 
Sbjct: 1   MASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQM 60

Query: 63  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 122
           AHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPG+II+RQRGT+ + G NVG+GKDHT+FS
Sbjct: 61  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFS 120

Query: 123 LIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQ 182
           LIDGLVKFEKYGPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EG+V + Q
Sbjct: 121 LIDGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEGIV-EVQ 180

Query: 183 LILASTD-AQETNPIC 191
           L+LA+ D + E N  C
Sbjct: 181 LVLAAADESPEVNADC 195

[Close]

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot
Match: RL27_NITSB (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.4e-29
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 116 LIDGLVKFEKYGPDKKKVSVYPRE 140
           LIDG+VKFE+YG D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot
Match: RL27_TRIEI (50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           AHKKG GST+NGRDS  QRLGVK +G QV K G+I+VRQRG+KFHAG NVG+GKD+T+F+
Sbjct: 2   AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFA 61

Query: 116 LIDGLVKFEKYGPDKKKVSVYP 138
           L++G+V FE+ G  +KKVSVYP
Sbjct: 62  LVEGMVTFERKGKSRKKVSVYP 83

[Close]

BLAST of Cp4.1LG01g25780 vs. TrEMBL
Match: A0A0A0LQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406670 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.8e-85
Identity = 164/185 (88.65%), Postives = 174/185 (94.05%), Query Frame = 1


Query: 6   MSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTK 65
           M+LNL+ +F+GLSL  +SSSSFFKGDFGSI   P LSVSFPN FPLTIE+AHKKGAGSTK
Sbjct: 1   MTLNLLSSFKGLSL--ASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILASTDAQE 185
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QL+LASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180

Query: 186 TNPIC 191
           TNP+C
Sbjct: 181 TNPVC 183

[Close]

BLAST of Cp4.1LG01g25780 vs. TrEMBL
Match: W9SAM0_9ROSA (50S ribosomal protein L27 OS=Morus notabilis GN=L484_010778 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.3e-77
Identity = 154/196 (78.57%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSLVSSSSSS---FFKGDFGSIQPPPN-LSVSFPNRFPLTIESA 60
           M   +MS NLVGAF+GLS+ SSSSSS   F +G+FGS+   PN LS S P RFPL IESA
Sbjct: 1   MAAVSMSFNLVGAFKGLSMSSSSSSSSSSFVRGNFGSLVVGPNKLSFSCPQRFPLIIESA 60

Query: 61  HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL 120
           HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL
Sbjct: 61  HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL 120

Query: 121 IDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQL 180
           IDGLVKFEK+GPD+KK+SVYPREVQPENPNSYRARK+EYFR+QRER+KAR+EG+V + QL
Sbjct: 121 IDGLVKFEKFGPDRKKISVYPREVQPENPNSYRARKKEYFRMQRERRKARQEGIVPEPQL 180

Query: 181 ILAST--DAQETNPIC 191
           +LAS   DA + NP+C
Sbjct: 181 VLASANDDATDDNPVC 196

[Close]

BLAST of Cp4.1LG01g25780 vs. TrEMBL
Match: A0A061EDW6_THECC (Ribosomal protein large subunit 27 OS=Theobroma cacao GN=TCM_017226 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-74
Identity = 150/193 (77.72%), Postives = 167/193 (86.53%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNR--FPLTIESAHK 60
           M    MS NLVGAFRGLSL SSS+SSF KG+ GSI  P   + SFP +  FPLTIESAHK
Sbjct: 1   MATATMSFNLVGAFRGLSLSSSSTSSFLKGELGSI--PKTATASFPRKSPFPLTIESAHK 60

Query: 61  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 120
           KGAGSTKNGRDS+GQRLGVKIFGDQ AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLID
Sbjct: 61  KGAGSTKNGRDSRGQRLGVKIFGDQAAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLID 120

Query: 121 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLIL 180
           GLVKFEK+GPD+KKVSVYPR VQPENPNSYRARKREYFR++RER+KARKEG  A+ +L+L
Sbjct: 121 GLVKFEKFGPDRKKVSVYPRVVQPENPNSYRARKREYFRMRRERRKARKEGSPAEPELVL 180

Query: 181 AS-TDAQETNPIC 191
           AS  DA ++NP+C
Sbjct: 181 ASAADATDSNPVC 191

[Close]

BLAST of Cp4.1LG01g25780 vs. TrEMBL
Match: A0A0D2Q342_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G042400 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-74
Identity = 148/193 (76.68%), Postives = 167/193 (86.53%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNR--FPLTIESAHK 60
           M    MS NLVGAFRGLSL SSS+SSF KG+ GSI       VSFP +  FPLTIESAHK
Sbjct: 1   MATATMSFNLVGAFRGLSLASSSTSSFMKGEVGSIH--KTAVVSFPRKSPFPLTIESAHK 60

Query: 61  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 120
           KGAGSTKNGRDSKGQRLGVKI+GDQVAKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLID
Sbjct: 61  KGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLID 120

Query: 121 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLIL 180
           GLVKFEK+GPDKKK+SVYPR +QPENPNSYRARKREYFR++RE++KA+KEG++ Q +L+L
Sbjct: 121 GLVKFEKFGPDKKKISVYPRVLQPENPNSYRARKREYFRMRREQRKAKKEGILVQPELVL 180

Query: 181 AS-TDAQETNPIC 191
           AS  DA + NP+C
Sbjct: 181 ASAADATDDNPVC 191

[Close]

BLAST of Cp4.1LG01g25780 vs. TrEMBL
Match: M5WZ86_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011695mg PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.8e-74
Identity = 156/200 (78.00%), Postives = 166/200 (83.00%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSL-------VSSSSSSFFKGDFGSIQPPPNLS-VSFPNRFPLT 60
           M V +MS NLVGAFRGLSL        SSSSSSFF+GD GS+Q  P LS VS P R  LT
Sbjct: 1   MAVASMSFNLVGAFRGLSLRSGSSSSSSSSSSSFFRGDLGSLQVGPKLSLVSNPKRLALT 60

Query: 61  IESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHT 120
           I++AHKKGAGSTKNGRDS GQRLGVKIFGDQ AK GSIIVRQRGTKFHAGKNVGLGKDHT
Sbjct: 61  IQNAHKKGAGSTKNGRDSPGQRLGVKIFGDQAAKAGSIIVRQRGTKFHAGKNVGLGKDHT 120

Query: 121 IFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVA 180
           IFSLIDGLVKFEKYGPDKKKVSVYP++VQPENPNSYRARKRE FRLQRERKKARKEG   
Sbjct: 121 IFSLIDGLVKFEKYGPDKKKVSVYPQQVQPENPNSYRARKRENFRLQRERKKARKEGYTL 180

Query: 181 --QAQLILASTDAQETNPIC 191
             Q QL+LAS DA +  P+C
Sbjct: 181 RNQPQLVLASADAADVPPVC 200

[Close]

BLAST of Cp4.1LG01g25780 vs. TAIR10
Match: AT5G40950.1 (AT5G40950.1 ribosomal protein large subunit 27)

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-69
Identity = 140/197 (71.07%), Postives = 160/197 (81.22%), Query Frame = 1


Query: 4   TAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNR-----FPLTIESAHK 63
           T+MSLNL+GAF+GLSL  SS+SSF +GD  S  P  + +V+ P        PLTIESAHK
Sbjct: 5   TSMSLNLIGAFKGLSL--SSTSSFLRGDL-SFSPKTSFTVTLPLENLQAPIPLTIESAHK 64

Query: 64  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 123
           KGAGSTKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLID
Sbjct: 65  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLID 124

Query: 124 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---VVAQAQ 183
           GLVKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +   +
Sbjct: 125 GLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPE 184

Query: 184 LIL--ASTDAQETNPIC 191
           L+L  AS D  E NP C
Sbjct: 185 LVLASASVDDAEANPEC 198

[Close]

BLAST of Cp4.1LG01g25780 vs. TAIR10
Match: AT2G16930.2 (AT2G16930.2 Ribosomal protein L27 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEK 126
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of Cp4.1LG01g25780 vs. TAIR10
Match: AT5G15220.1 (AT5G15220.1 Ribosomal protein L27 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEK 126
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of Cp4.1LG01g25780 vs. NCBI nr
Match: gi|659081447|ref|XP_008441337.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 2.5e-87
Identity = 168/185 (90.81%), Postives = 176/185 (95.14%), Query Frame = 1


Query: 6   MSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTK 65
           M+LNLV +FRGLSL  +SSSSFFKGDFGSI  PPNLS+SFPN FPLTIE+AHKKGAGSTK
Sbjct: 1   MTLNLVASFRGLSL--ASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILASTDAQE 185
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QLILASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVE 180

Query: 186 TNPIC 191
           TNP+C
Sbjct: 181 TNPVC 183

[Close]

BLAST of Cp4.1LG01g25780 vs. NCBI nr
Match: gi|449441696|ref|XP_004138618.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.9e-85
Identity = 164/185 (88.65%), Postives = 174/185 (94.05%), Query Frame = 1


Query: 6   MSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTK 65
           M+LNL+ +F+GLSL  +SSSSFFKGDFGSI   P LSVSFPN FPLTIE+AHKKGAGSTK
Sbjct: 1   MTLNLLSSFKGLSL--ASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILASTDAQE 185
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QL+LASTD  E
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVE 180

Query: 186 TNPIC 191
           TNP+C
Sbjct: 181 TNPVC 183

[Close]

BLAST of Cp4.1LG01g25780 vs. NCBI nr
Match: gi|703159931|ref|XP_010112373.1| (50S ribosomal protein L27 [Morus notabilis])

HSP 1 Score: 295.0 bits (754), Expect = 9.1e-77
Identity = 154/196 (78.57%), Postives = 172/196 (87.76%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSLVSSSSSS---FFKGDFGSIQPPPN-LSVSFPNRFPLTIESA 60
           M   +MS NLVGAF+GLS+ SSSSSS   F +G+FGS+   PN LS S P RFPL IESA
Sbjct: 1   MAAVSMSFNLVGAFKGLSMSSSSSSSSSSFVRGNFGSLVVGPNKLSFSCPQRFPLIIESA 60

Query: 61  HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL 120
           HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL
Sbjct: 61  HKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSL 120

Query: 121 IDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQL 180
           IDGLVKFEK+GPD+KK+SVYPREVQPENPNSYRARK+EYFR+QRER+KAR+EG+V + QL
Sbjct: 121 IDGLVKFEKFGPDRKKISVYPREVQPENPNSYRARKKEYFRMQRERRKARQEGIVPEPQL 180

Query: 181 ILAST--DAQETNPIC 191
           +LAS   DA + NP+C
Sbjct: 181 VLASANDDATDDNPVC 196

[Close]

BLAST of Cp4.1LG01g25780 vs. NCBI nr
Match: gi|694435509|ref|XP_009344917.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 289.7 bits (740), Expect = 3.8e-75
Identity = 153/199 (76.88%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSL-----VSSSSSSFFKGDFGSIQPPPNLSV--SFPNRFPLTI 60
           M V +MS N+VGAFRGLSL      SSSSSSFF+GD GS+Q  P LS+  S P R PLTI
Sbjct: 1   MAVASMSFNIVGAFRGLSLRPTSTSSSSSSSFFRGDLGSLQLGPKLSLVSSGPQRLPLTI 60

Query: 61  ESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTI 120
           ++AHKKGAGSTKNGRDSKGQRLGVKI+GDQVAK GSIIVRQRGTKFHAGKNVGLGKDHTI
Sbjct: 61  QNAHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKAGSIIVRQRGTKFHAGKNVGLGKDHTI 120

Query: 121 FSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQ 180
           FSLIDG+VKFEK+GPDKKK+SVYPREVQPENPNSYR +KRE FRLQRERKKARKEG + Q
Sbjct: 121 FSLIDGMVKFEKFGPDKKKISVYPREVQPENPNSYRVKKRENFRLQRERKKARKEGYILQ 180

Query: 181 --AQLILASTDAQETNPIC 191
              +L+LAS DA + NP+C
Sbjct: 181 NKPELLLASADAADANPVC 199

[Close]

BLAST of Cp4.1LG01g25780 vs. NCBI nr
Match: gi|694392328|ref|XP_009371644.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 288.9 bits (738), Expect = 6.5e-75
Identity = 152/199 (76.38%), Postives = 170/199 (85.43%), Query Frame = 1


Query: 1   MPVTAMSLNLVGAFRGLSL-----VSSSSSSFFKGDFGSIQ--PPPNLSVSFPNRFPLTI 60
           M V +MS N+VGAFRGLSL      SSSSSSFF+GD GS+Q  P  +L+ S P R PLTI
Sbjct: 1   MAVASMSFNIVGAFRGLSLRPTSTSSSSSSSFFRGDMGSLQLGPKQSLASSGPQRLPLTI 60

Query: 61  ESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTI 120
           ++AHKKGAGSTKNGRDSKGQRLGVKI+GDQVAK GSIIVRQRGTKFHAGKNVGLGKDHTI
Sbjct: 61  QNAHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKAGSIIVRQRGTKFHAGKNVGLGKDHTI 120

Query: 121 FSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQ 180
           FSLIDG+VKFEK+GPDKKK+SVYPREVQPENPNSYR +KRE FRLQRERKKARKEG + Q
Sbjct: 121 FSLIDGMVKFEKFGPDKKKISVYPREVQPENPNSYRVKKRENFRLQRERKKARKEGYILQ 180

Query: 181 --AQLILASTDAQETNPIC 191
              +L+LAS DA + NP+C
Sbjct: 181 NKPELLLASADAADANPVC 199

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g25780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK27_TOBAC	1.5e-71	81.50	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1	[more]
RK27_ARATH	1.3e-67	71.07	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 S...	[more]
RK27_ORYSJ	1.7e-62	66.33	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL2...	[more]
RL27_NITSB	5.4e-29	71.43	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=...	[more]
RL27_TRIEI	1.3e-27	68.29	50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE...	[more]

BLAST of Cp4.1LG01g25780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ66_CUCSA	4.8e-85	88.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406670 PE=3 SV=1	[more]
W9SAM0_9ROSA	6.3e-77	78.57	50S ribosomal protein L27 OS=Morus notabilis GN=L484_010778 PE=3 SV=1	[more]
A0A061EDW6_THECC	1.0e-74	77.72	Ribosomal protein large subunit 27 OS=Theobroma cacao GN=TCM_017226 PE=3 SV=1	[more]
A0A0D2Q342_GOSRA	2.3e-74	76.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G042400 PE=3 SV=1	[more]
M5WZ86_PRUPE	3.8e-74	78.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011695mg PE=3 SV=1	[more]

BLAST of Cp4.1LG01g25780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40950.1	7.4e-69	71.07	ribosomal protein large subunit 27	[more]
AT2G16930.2	1.1e-19	65.71	Ribosomal protein L27 family protein	[more]
AT5G15220.1	1.1e-19	65.71	Ribosomal protein L27 family protein	[more]

BLAST of Cp4.1LG01g25780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081447\|ref\|XP_008441337.1\|	2.5e-87	90.81	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo]	[more]
gi\|449441696\|ref\|XP_004138618.1\|	6.9e-85	88.65	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus]	[more]
gi\|703159931\|ref\|XP_010112373.1\|	9.1e-77	78.57	50S ribosomal protein L27 [Morus notabilis]	[more]
gi\|694435509\|ref\|XP_009344917.1\|	3.8e-75	76.88	PREDICTED: 50S ribosomal protein L27, chloroplastic [Pyrus x bretschneideri]	[more]
gi\|694392328\|ref\|XP_009371644.1\|	6.5e-75	76.38	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Pyrus x bretschneideri...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018261	Ribosomal_L27_CS
IPR001684	Ribosomal_L27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g25780.1	Cp4.1LG01g25780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 83..123 score: 5.0
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 108..132 score: 1.6E-39coord: 58..82 score: 1.6E-39coord: 83..107 score: 1.6
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 55..138 score: 27
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 43..185 score: 2.4
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 56..135 score: 6.0
IPR001684	Ribosomal protein L27	TIGRFAMs	TIGR00062	TIGR00062	coord: 56..135 score: 1.6
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 88..102 scor
None	No IPR available	unknown	Coil	Coil	coord: 148..168 scor
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 74..138 score: 1.3
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 56..137 score: 3.84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g25780	Cucsa.087740	Cucumber (Gy14) v1	cgycpeB0164
Cp4.1LG01g25780	CmaCh15G000760	Cucurbita maxima (Rimu)	cmacpeB317
Cp4.1LG01g25780	CmaCh04G029740	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g25780	CmoCh04G030930	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g25780	CmoCh15G000770	Cucurbita moschata (Rifu)	cmocpeB279
Cp4.1LG01g25780	Cla006506	Watermelon (97103) v1	cpewmB461
Cp4.1LG01g25780	Csa2G406670	Cucumber (Chinese Long) v2	cpecuB386
Cp4.1LG01g25780	MELO3C008191	Melon (DHL92) v3.5.1	cpemeB400
Cp4.1LG01g25780	ClCG11G007120	Watermelon (Charleston Gray)	cpewcgB355
Cp4.1LG01g25780	CSPI02G25620	Wild cucumber (PI 183967)	cpecpiB385
Cp4.1LG01g25780	Lsi03G003970	Bottle gourd (USVL1VR-Ls)	cpelsiB339
Cp4.1LG01g25780	MELO3C008191.2	Melon (DHL92) v3.6.1	cpemedB465
Cp4.1LG01g25780	CsaV3_2G034130	Cucumber (Chinese Long) v3	cpecucB0482
Cp4.1LG01g25780	Bhi04G001986	Wax gourd	cpewgoB0525
Cp4.1LG01g25780	CsGy2G025250	Cucumber (Gy14) v2	cgybcpeB214
Cp4.1LG01g25780	Carg24279	Silver-seed gourd	carcpeB1408
Cp4.1LG01g25780	Carg06048	Silver-seed gourd	carcpeB0034

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g25780	Cp4.1LG13g11300	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:

None