Bhi04G001986 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001986
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	50S ribosomal protein L27
Location	chr4 : 66307698 .. 66309227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGTTAAACATAAGGTTTCATTTAGGCTGTGTGACTTTGTGTTGTTCAGTGCAAGCTTGTGGCAATCGTGGTTCGAAGGATAAGGTTTTTATTCGGTCCGTCTCTGTCTCTTTCCCTTCTCCATATCCATTTCCTTTCTCAATCTGAAACCTCTTCAATTTCTTCTCTTCCTTTCTGAATTCCCCGTTGCAGCCATGAGTTTAAACCTAGTTGCTGCATTCAAAGGCCTCTCTCTCGTCTCTTCTTCCTCTTTCTTCAAAGGCGATTTCGGCTCTATTCAAACCCCTCCCAAGCTCTCCTTCTCCTTCCCAAACACATTCCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGAGATTCTAAAGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAAGTTGCCAAACCTGGTTCCATTATCGTTCGTCAGCGTGGAACTAAGGTAATTAATTTCTCATTTCATTTTTGTATATTACATCCAGTTGAACTCCGTTCCCGTTCCCCCCATTGTTTAGGGCATTCTTGAGCATACATCGAACCTTTTTTTTTCTCGTAATTGAGTCATATTGTTATCTGGTGCTTCCAACGAACAAATAAATACCGGGTCTCGCTATTTACTAGTTGTGACAAATATCCATGAATTTGAAAACATTATCTTTGATTTGAAGATGAAGGGAATTGTTCTAGACAATGTTGTTAACTAACACATAAATCCCTAGGTTGATTCTTTATTGTTTTATTTCTGTTGTTCTTTATTTGTCGATTCCATTGATTTCAGTTCCATGCTGGAAAAAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCGGACAAGAAGAAGGTTTTCACTTCGAATGAGAACCTTTCGATATGAATAATTCTTACAAAACCGACATATAATTACTTCATTGCATTACAGGTGAGTGTTTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCTATTAGTATTAGCTTCCACTGATGCCACTGAGACCAATCCAGTTTGCTGATTTCTGAAGGCATCACTTTGATCACTGCTTGTTTAAAAGCTCTGATGATCTTGAAGGTAGAAGGTCTGCTTCATTGGCTTCTCTTTTCTTTGTTGTGCACATATAATTTGCCAGATTCTTCACAGGAATGTGTTTCATTATTATTCTCAATTGGCAGTGTTCTTCTTTTTGTCCCTAAATTTTCTCTTTAGTCCATCTCACTACTGACTACTTTTTGTTGATTTTTCTGTCAAAATGGTATTCAACAGAACAGATAATACAGGATGAGTTTTGATTAATTTTGTGTTGAAATGACAACCCAAGAAATTAGATGAATTGGGTGGCTCTGCCCTGTACCAACATTAATAGACTGAAATTTGATATGAAT

mRNA sequence

AGAAAGTTAAACATAAGGTTTCATTTAGGCTGTGTGACTTTGTGTTGTTCAGTGCAAGCTTGTGGCAATCGTGGTTCGAAGGATAAGGTTTTTATTCGGTCCGTCTCTGTCTCTTTCCCTTCTCCATATCCATTTCCTTTCTCAATCTGAAACCTCTTCAATTTCTTCTCTTCCTTTCTGAATTCCCCGTTGCAGCCATGAGTTTAAACCTAGTTGCTGCATTCAAAGGCCTCTCTCTCGTCTCTTCTTCCTCTTTCTTCAAAGGCGATTTCGGCTCTATTCAAACCCCTCCCAAGCTCTCCTTCTCCTTCCCAAACACATTCCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGAGATTCTAAAGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAAGTTGCCAAACCTGGTTCCATTATCGTTCGTCAGCGTGGAACTAAGTTCCATGCTGGAAAAAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCGGACAAGAAGAAGGTGAGTGTTTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCTATTAGTATTAGCTTCCACTGATGCCACTGAGACCAATCCAGTTTGCTGATTTCTGAAGGCATCACTTTGATCACTGCTTGTTTAAAAGCTCTGATGATCTTGAAGGTAGAAGGTCTGCTTCATTGGCTTCTCTTTTCTTTGTTGTGCACATATAATTTGCCAGATTCTTCACAGGAATGTGTTTCATTATTATTCTCAATTGGCAGTGTTCTTCTTTTTGTCCCTAAATTTTCTCTTTAGTCCATCTCACTACTGACTACTTTTTGTTGATTTTTCTGTCAAAATGGTATTCAACAGAACAGATAATACAGGATGAGTTTTGATTAATTTTGTGTTGAAATGACAACCCAAGAAATTAGATGAATTGGGTGGCTCTGCCCTGTACCAACATTAATAGACTGAAATTTGATATGAAT

Coding sequence (CDS)

ATGAGTTTAAACCTAGTTGCTGCATTCAAAGGCCTCTCTCTCGTCTCTTCTTCCTCTTTCTTCAAAGGCGATTTCGGCTCTATTCAAACCCCTCCCAAGCTCTCCTTCTCCTTCCCAAACACATTCCCTTTAACCATTGAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGAGATTCTAAAGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAAGTTGCCAAACCTGGTTCCATTATCGTTCGTCAGCGTGGAACTAAGTTCCATGCTGGAAAAAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCGGACAAGAAGAAGGTGAGTGTTTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTATAGAGCAAGGAAGAGGGAATATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCTATTAGTATTAGCTTCCACTGATGCCACTGAGACCAATCCAGTTTGCTGA

Protein sequence

MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETNPVC

Homology

[Close]

BLAST of Bhi04G001986 vs. Swiss-Prot
Match: sp|P82190|RK27_SPIOL (50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 PE=1 SV=2)

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-71
Identity = 143/189 (75.66%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSL--VSSSSFFKGDFG--SIQTPPKLSFSFPNTFPLTIENAHKKGAGS 60
           MS NL+A+F+G+SL   SSSSFFKG+FG  S++ P K   S  + FPLTIE+AHKKGAGS
Sbjct: 7   MSFNLMASFRGMSLSSSSSSSFFKGEFGPSSLRLPNKSPLSV-SPFPLTIESAHKKGAGS 66

Query: 61  TKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 120
           TKNGRDSKGQRLGVKI+GDQVAKPG+II+RQRGTKFH GKNVG+GKDHTIF+LIDGLVKF
Sbjct: 67  TKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALIDGLVKF 126

Query: 121 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLAS--T 180
           EKYGPDKKKVSVYPRE+QPENPNSYRARKRE FRLQRE+KKAR+EG   QP L+LAS  T
Sbjct: 127 EKYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLILASAAT 186

Query: 181 DATETNPVC 184
           D  + + VC
Sbjct: 187 DNADESAVC 194

[Close]

BLAST of Bhi04G001986 vs. Swiss-Prot
Match: sp|P30155|RK27_TOBAC (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.3e-71
Identity = 138/167 (82.63%), Postives = 148/167 (88.62%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFG-SIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKN 60
           +S +LV AFKGLSL SSSSF KGDFG +    PK S SFP   PLTIE+AHKKGAGSTKN
Sbjct: 3   VSFSLVGAFKGLSLASSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGSTKN 62

Query: 61  GRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKY 120
           GRDS GQRLGVKIFGDQVAKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK+
Sbjct: 63  GRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 122

Query: 121 GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQ 167
           GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EG+I Q
Sbjct: 123 GPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169

[Close]

BLAST of Bhi04G001986 vs. Swiss-Prot
Match: sp|Q9FLN4|RK27_ARATH (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-62
Identity = 133/195 (68.21%), Postives = 146/195 (74.87%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSF-------SFPNTFPLTIENAHKKG 60
           MSLNL+ AFKGLSL S+SSF +GD   +   PK SF       +     PLTIE+AHKKG
Sbjct: 7   MSLNLIGAFKGLSLSSTSSFLRGD---LSFSPKTSFTVTLPLENLQAPIPLTIESAHKKG 66

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLIDGL
Sbjct: 67  AGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGL 126

Query: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQR---ERKKARKEGIIAQPLLV 180
           VKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQR                P LV
Sbjct: 127 VKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQRXXXXXXXXXXXXXXPTPELV 186

Query: 181 L--ASTDATETNPVC 184
           L  AS D  E NP C
Sbjct: 187 LASASVDDAEANPEC 198

[Close]

BLAST of Bhi04G001986 vs. Swiss-Prot
Match: sp|O65037|RK27_ORYSJ (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.2e-62
Identity = 126/192 (65.62%), Postives = 147/192 (76.56%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSL------VSSSSFFKGDFGSIQTPPKLSFSFPNTFP---LTIENAHK 60
           M+  LV AFKG+SL       SS+SF + D  S+     +    P T P   LTI+ AHK
Sbjct: 4   MAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMAHK 63

Query: 61  KGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 120
           KGAGSTKNGRDS GQRLGVKI+GDQVAKPG+II+RQRGT+ + G NVG+GKDHT+FSLID
Sbjct: 64  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLID 123

Query: 121 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVL 180
           GLVKFEKYGPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EGI+   L++ 
Sbjct: 124 GLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEGIVEVQLVLA 183

Query: 181 ASTDATETNPVC 184
           A+ ++ E N  C
Sbjct: 184 AADESPEVNADC 195

[Close]

BLAST of Bhi04G001986 vs. Swiss-Prot
Match: sp|A6Q4D3|RL27_NITSB (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpmA PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.3e-29
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 109 LIDGLVKFEKYGPDKKKVSVYPRE 133
           LIDG+VKFE+YG D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of Bhi04G001986 vs. TAIR10
Match: AT5G40950.1 (ribosomal protein large subunit 27)

HSP 1 Score: 239.2 bits (609), Expect = 2.0e-63
Identity = 133/195 (68.21%), Postives = 146/195 (74.87%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSF-------SFPNTFPLTIENAHKKG 60
           MSLNL+ AFKGLSL S+SSF +GD   +   PK SF       +     PLTIE+AHKKG
Sbjct: 7   MSLNLIGAFKGLSLSSTSSFLRGD---LSFSPKTSFTVTLPLENLQAPIPLTIESAHKKG 66

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDS GQRLGVKI+GDQVAKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLIDGL
Sbjct: 67  AGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGL 126

Query: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQR---ERKKARKEGIIAQPLLV 180
           VKFEK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQR                P LV
Sbjct: 127 VKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQRXXXXXXXXXXXXXXPTPELV 186

Query: 181 L--ASTDATETNPVC 184
           L  AS D  E NP C
Sbjct: 187 LASASVDDAEANPEC 198

[Close]

BLAST of Bhi04G001986 vs. TAIR10
Match: AT2G16930.2 (Ribosomal protein L27 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of Bhi04G001986 vs. TAIR10
Match: AT5G15220.1 (Ribosomal protein L27 family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 109 LIDGLVKFEK 119
           L +G V+FEK
Sbjct: 107 LKEGRVRFEK 116

[Close]

BLAST of Bhi04G001986 vs. TrEMBL
Match: tr|A0A1S3B381|A0A1S3B381_CUCME (50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 8.0e-91
Identity = 172/183 (93.99%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60
           M+LNLVA+F+GLSL SSSSFFKGDFGSI TPP LS SFPNTFPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQP L+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Bhi04G001986 vs. TrEMBL
Match: tr|A0A0A0LQ66|A0A0A0LQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 4.4e-89
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60
           M+LNL+++FKGLSL SSSSFFKGDFGSI T PKLS SFPN FPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQP L+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Bhi04G001986 vs. TrEMBL
Match: tr|A0A2P5CJS6|A0A2P5CJS6_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146750 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 156/195 (80.00%), Postives = 166/195 (85.13%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSL-----VSSSSFFKGDFGSI-QTPPKLSFSFPNTFPLTIENAHKKGA 60
           MS NLV AF+GLS+     +SSSSFFKGD GS+    PKLSFS P   PLTI+NAHKKGA
Sbjct: 6   MSFNLVGAFRGLSMSSGSSLSSSSFFKGDLGSLTMAAPKLSFSCPQRLPLTIQNAHKKGA 65

Query: 61  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTK----FHAGKNVGLGKDHTIFSLI 120
           GSTKNGRDS GQRLGVKIFGDQVAKPGSIIVRQRGTK    FHAGKNVGLGKDHT+FSLI
Sbjct: 66  GSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKHQIQFHAGKNVGLGKDHTLFSLI 125

Query: 121 DGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLV 180
           DGLVKFEK+GPD+KKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+ QP LV
Sbjct: 126 DGLVKFEKFGPDRKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVPQPQLV 185

Query: 181 LAST--DATETNPVC 184
           LAS   D T+ N VC
Sbjct: 186 LASAEDDTTDNNSVC 200

[Close]

BLAST of Bhi04G001986 vs. TrEMBL
Match: tr|A0A2P5FC50|A0A2P5FC50_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_089090 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 155/195 (79.49%), Postives = 163/195 (83.59%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSS-----SSFFKGDFGSI-QTPPKLSFSFPNTFPLTIENAHKKGA 60
           MS NLV AF+GLS+ S        FFKGD GS+    PKLSFS P   PLTI+NAHKKGA
Sbjct: 6   MSFNLVGAFRGLSMSSGXXXXXXXFFKGDLGSLTMAAPKLSFSCPQRLPLTIQNAHKKGA 65

Query: 61  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTK----FHAGKNVGLGKDHTIFSLI 120
           GSTKNGRDS GQRLGVKIFGDQVAKPGSIIVRQRGTK    FHAGKNVGLGKDHTIFSLI
Sbjct: 66  GSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKHQIQFHAGKNVGLGKDHTIFSLI 125

Query: 121 DGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLV 180
           DGLVKFEK+GPD+KKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+ QP LV
Sbjct: 126 DGLVKFEKFGPDRKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVPQPQLV 185

Query: 181 LAST--DATETNPVC 184
           LAS   D T+ NPVC
Sbjct: 186 LASADDDTTDNNPVC 200

[Close]

BLAST of Bhi04G001986 vs. TrEMBL
Match: tr|W9SAM0|W9SAM0_9ROSA (50S ribosomal protein L27 OS=Morus notabilis OX=981085 GN=L484_010778 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.9e-74
Identity = 149/191 (78.01%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSL-----VSSSSFFKGDFGSIQT-PPKLSFSFPNTFPLTIENAHKKGA 60
           MS NLV AFKGLS+          F +G+FGS+   P KLSFS P  FPL IE+AHKKGA
Sbjct: 6   MSFNLVGAFKGLSMXXXXXXXXXXFVRGNFGSLVVGPNKLSFSCPQRFPLIIESAHKKGA 65

Query: 61  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 120
           GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV
Sbjct: 66  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 125

Query: 121 KFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLAST 180
           KFEK+GPD+KK+SVYPREVQPENPNSYRARK+EYFR+QRER+KAR+EGI+ +P LVLAS 
Sbjct: 126 KFEKFGPDRKKISVYPREVQPENPNSYRARKKEYFRMQRERRKARQEGIVPEPQLVLASA 185

Query: 181 --DATETNPVC 184
             DAT+ NPVC
Sbjct: 186 NDDATDDNPVC 196

[Close]

BLAST of Bhi04G001986 vs. NCBI nr
Match: XP_008441337.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 1.2e-90
Identity = 172/183 (93.99%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60
           M+LNLVA+F+GLSL SSSSFFKGDFGSI TPP LS SFPNTFPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQP L+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Bhi04G001986 vs. NCBI nr
Match: XP_023550670.1 (50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550671.1 50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.8 bits (865), Expect = 2.3e-89
Identity = 173/185 (93.51%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLV--SSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTK 60
           MSLNL+ AF+GLSL   SSSSFFKGDFGSIQ PPKLS SFPN FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQP LVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Bhi04G001986 vs. NCBI nr
Match: XP_004138618.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus] >XP_011649960.1 PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus] >KGN63169.1 hypothetical protein Csa_2G406670 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 6.7e-89
Identity = 170/183 (92.90%), Postives = 175/183 (95.63%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLVSSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTKNG 60
           M+LNL+++FKGLSL SSSSFFKGDFGSI T PKLS SFPN FPLTIENAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQP L+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Bhi04G001986 vs. NCBI nr
Match: XP_022993762.1 (50S ribosomal protein L27, chloroplastic [Cucurbita maxima] >XP_022993763.1 50S ribosomal protein L27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 336.3 bits (861), Expect = 6.7e-89
Identity = 172/185 (92.97%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLV--SSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTK 60
           MSLNL+ AF+GLSL   SSSSFFKGDFGSIQ PPKLS SFPN FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG I+QP LVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSISQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Bhi04G001986 vs. NCBI nr
Match: XP_022939083.1 (50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939084.1 50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939085.1 50S ribosomal protein L27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 335.5 bits (859), Expect = 1.1e-88
Identity = 172/185 (92.97%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 1   MSLNLVAAFKGLSLV--SSSSFFKGDFGSIQTPPKLSFSFPNTFPLTIENAHKKGAGSTK 60
           MSLNL+ AF+GLSL   SSSSFFKGDFGSIQ PPKLS SFP  FPLTIENAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLAPSSSSSFFKGDFGSIQLPPKLSVSFPTRFPLTIENAHKKGAGSTK 60

Query: 61  NGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPLLVLASTDATE 180
           YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQP LVLASTDATE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 181 TNPVC 184
           TNPVC
Sbjct: 181 TNPVC 185

The following BLAST results are available for this feature:

BLAST of Bhi04G001986 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82190\|RK27_SPIOL	1.9e-71	75.66	50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 P...	[more]
sp\|P30155\|RK27_TOBAC	4.3e-71	82.63	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 P...	[more]
sp\|Q9FLN4\|RK27_ARATH	3.6e-62	68.21	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
sp\|O65037\|RK27_ORYSJ	6.2e-62	65.63	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|A6Q4D3\|RL27_NITSB	5.3e-29	71.43	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpm...	[more]

BLAST of Bhi04G001986 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40950.1	2.0e-63	68.21	ribosomal protein large subunit 27	[more]
AT2G16930.2	1.0e-19	65.71	Ribosomal protein L27 family protein	[more]
AT5G15220.1	1.0e-19	65.71	Ribosomal protein L27 family protein	[more]

BLAST of Bhi04G001986 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B381\|A0A1S3B381_CUCME	8.0e-91	93.99	50S ribosomal protein L27, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485482...	[more]
tr\|A0A0A0LQ66\|A0A0A0LQ66_CUCSA	4.4e-89	92.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406670 PE=3 SV=1	[more]
tr\|A0A2P5CJS6\|A0A2P5CJS6_PARAD	1.6e-75	80.00	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_146750 PE=3 SV=...	[more]
tr\|A0A2P5FC50\|A0A2P5FC50_9ROSA	1.1e-74	79.49	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_089090 PE=3 SV=1	[more]
tr\|W9SAM0\|W9SAM0_9ROSA	8.9e-74	78.01	50S ribosomal protein L27 OS=Morus notabilis OX=981085 GN=L484_010778 PE=3 SV=1	[more]

BLAST of Bhi04G001986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441337.1	1.2e-90	93.99	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo]	[more]
XP_023550670.1	2.3e-89	93.51	50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550...	[more]
XP_004138618.1	6.7e-89	92.90	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus] >XP_011649...	[more]
XP_022993762.1	6.7e-89	92.97	50S ribosomal protein L27, chloroplastic [Cucurbita maxima] >XP_022993763.1 50S ...	[more]
XP_022939083.1	1.1e-88	92.97	50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939084.1 50...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018261	Ribosomal_L27_CS
IPR001684	Ribosomal_L27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009735	response to cytokinin
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001986	Bhi04M001986	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..161
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 68..136 e-value: 1.2E-28 score: 100.5
None	No IPR available	SUPERFAMILY	SSF110324	Ribosomal L27 protein-like	coord: 49..130
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 51..75 score: 66.77 coord: 76..100 score: 62.92 coord: 101..125 score: 49.23
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 48..128 e-value: 1.1E-36 score: 122.7
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 49..128 e-value: 5.5E-36 score: 122.3
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 32..158
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 76..116 e-value: 4.0E-16 score: 205.0
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 48..131 score: 27.283
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 81..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G001986	Csa2G406670	Cucumber (Chinese Long) v2	cuwgoB164
Bhi04G001986	MELO3C008191	Melon (DHL92) v3.5.1	mewgoB341
Bhi04G001986	ClCG11G007120	Watermelon (Charleston Gray)	wcgwgoB158
Bhi04G001986	CSPI02G25620	Wild cucumber (PI 183967)	cpiwgoB161
Bhi04G001986	Cucsa.087740	Cucumber (Gy14) v1	cgywgoB111
Bhi04G001986	CmaCh04G029740	Cucurbita maxima (Rimu)	cmawgoB0860
Bhi04G001986	CmaCh15G000760	Cucurbita maxima (Rimu)	cmawgoB0397
Bhi04G001986	CmoCh04G030930	Cucurbita moschata (Rifu)	cmowgoB0857
Bhi04G001986	CmoCh15G000770	Cucurbita moschata (Rifu)	cmowgoB0392
Bhi04G001986	Lsi03G003970	Bottle gourd (USVL1VR-Ls)	lsiwgoB322
Bhi04G001986	Cp4.1LG13g11300	Cucurbita pepo (Zucchini)	cpewgoB0247
Bhi04G001986	Cp4.1LG01g25780	Cucurbita pepo (Zucchini)	cpewgoB0525
Bhi04G001986	CsGy2G025250	Cucumber (Gy14) v2	cgybwgoB159
Bhi04G001986	MELO3C008191.2	Melon (DHL92) v3.6.1	medwgoB340
Bhi04G001986	Carg24279	Silver-seed gourd	carwgoB1187
Bhi04G001986	Carg06048	Silver-seed gourd	carwgoB0022
Bhi04G001986	CsaV3_2G034130	Cucumber (Chinese Long) v3	cucwgoB171
Bhi04G001986	Cla006506	Watermelon (97103) v1	wgowmB347
Bhi04G001986	Cla97C11G214040	Watermelon (97103) v2	wgowmbB290

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001986	Cucurbita maxima (Rimu)	cmawgoB0868