Cla006506 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006506
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L27 (AHRD V1 ***- Q8LEF5_ARATH); contains Interpro domain(s) IPR001684 Ribosomal protein L27
Location	Chr11 : 621583 .. 622337 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGGTAATTTTCAATTTTACATGCACTTCAACTCCCTACCCCTTTCGCCCATTGTTTAGGGCTTTTTCGAGCTTCCAATGCTCTTTATTTACTATGTCCTTCTTTGTAATTCAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTTTCACTTCGAATCTGAACCTTTCAATATCTTAATTATATTGCACGAATGAAACACAAAACTGAGATATATTTTACTTCATTGCATTGCAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTTTGCTGA

mRNA sequence

ATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTTTGCTGA

Coding sequence (CDS)

ATGAGTTTAAACCTAGTCGCTGCATTCACCGGTCTCTCTCTCGCCTCTTCTTCCTCTTTCCTCAAAGGCGATTTCCGCTCTATTCAAACCCCTCCCAACCTCTCCTTCTCCTTCCCCAACACATTCCCTTTAACCATTCAAAACGCCCACAAGAAAGGAGCTGGAAGCACCAAGAACGGCCGTGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGACCAACTTGCCAAGCCTGGTTCCATCATCGTTCGTCAGCGTGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAGTTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAAAATCCAAACAGCTATAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATTGTTGCTCAACCCCAATTGGTATTAGCTTCCACTGATGCTACTGAAACCAATCCAGTTTGCTGA

Protein sequence

MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETNPVC

Homology

[Close]

BLAST of Cla006506 vs. Swiss-Prot
Match: RK27_TOBAC (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.2e-71
Identity = 134/167 (80.24%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSSFLKGDF-RSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKN 60
           +S +LV AF GLSLASSSSFLKGDF  +    P  S SFP   PLTI++AHKKGAGSTKN
Sbjct: 3   VSFSLVGAFKGLSLASSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGSTKN 62

Query: 61  GRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKY 120
           GRDS GQRLGVKIFGDQ+AKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK+
Sbjct: 63  GRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 122

Query: 121 GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQ 167
           GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EG++ Q
Sbjct: 123 GPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169

[Close]

BLAST of Cla006506 vs. Swiss-Prot
Match: RK27_ARATH (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.5e-68
Identity = 136/192 (70.83%), Postives = 155/192 (80.73%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSSFLKGDFR-SIQTPPNLSFSFPNT---FPLTIQNAHKKGAGS 60
           MSLNL+ AF GLSL+S+SSFL+GD   S +T   ++    N     PLTI++AHKKGAGS
Sbjct: 7   MSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGS 66

Query: 61  TKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 120
           TKNGRDS GQRLGVKI+GDQ+AKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLIDGLVKF
Sbjct: 67  TKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKF 126

Query: 121 EKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---IVAQPQLVL-- 180
           EK+GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P+LVL  
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLAS 186

Query: 181 ASTDATETNPVC 184
           AS D  E NP C
Sbjct: 187 ASVDDAEANPEC 198

[Close]

BLAST of Cla006506 vs. Swiss-Prot
Match: RK27_ORYSJ (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-64
Identity = 131/193 (67.88%), Postives = 148/193 (76.68%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLAS------SSSFLKGDFRSIQTPPNLSFSFPNTFP---LTIQNAHK 60
           M+  LV AF G+SL+S      S+SFL+ D  S+     +    P T P   LTIQ AHK
Sbjct: 4   MAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMAHK 63

Query: 61  KGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 120
           KGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+II+RQRGT+ + G NVG+GKDHT+FSLID
Sbjct: 64  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLID 123

Query: 121 GLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVL 180
           GLVKFEKYGPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EGIV + QLVL
Sbjct: 124 GLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEGIV-EVQLVL 183

Query: 181 ASTD-ATETNPVC 184
           A+ D + E N  C
Sbjct: 184 AAADESPEVNADC 195

[Close]

BLAST of Cla006506 vs. Swiss-Prot
Match: RL27_NITSB (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.0e-29
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 109 LIDGLVKFEKYGPDKKKVSVYPRE 133
           LIDG+VKFE+YG D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of Cla006506 vs. Swiss-Prot
Match: RL27_TRIEI (50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-27
Identity = 55/82 (67.07%), Postives = 69/82 (84.15%), Query Frame = 1


Query: 49  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 108
           AHKKG GST+NGRDS  QRLGVK +G Q+ K G+I+VRQRG+KFHAG NVG+GKD+T+F+
Sbjct: 2   AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFA 61

Query: 109 LIDGLVKFEKYGPDKKKVSVYP 131
           L++G+V FE+ G  +KKVSVYP
Sbjct: 62  LVEGMVTFERKGKSRKKVSVYP 83

[Close]

BLAST of Cla006506 vs. TrEMBL
Match: A0A0A0LQ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406670 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 6.9e-89
Identity = 165/183 (90.16%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 60
           M+LNL+++F GLSLASSSSF KGDF SI T P LS SFPN FPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Cla006506 vs. TrEMBL
Match: W9SAM0_9ROSA (50S ribosomal protein L27 OS=Morus notabilis GN=L484_010778 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-77
Identity = 151/191 (79.06%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSS-----FLKGDFRSIQTPPN-LSFSFPNTFPLTIQNAHKKGA 60
           MS NLV AF GLS++SSSS     F++G+F S+   PN LSFS P  FPL I++AHKKGA
Sbjct: 6   MSFNLVGAFKGLSMSSSSSSSSSSFVRGNFGSLVVGPNKLSFSCPQRFPLIIESAHKKGA 65

Query: 61  GSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 120
           GSTKNGRDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV
Sbjct: 66  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 125

Query: 121 KFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAST 180
           KFEK+GPD+KK+SVYPREVQPENPNSYRARK+EYFR+QRER+KAR+EGIV +PQLVLAS 
Sbjct: 126 KFEKFGPDRKKISVYPREVQPENPNSYRARKKEYFRMQRERRKARQEGIVPEPQLVLASA 185

Query: 181 --DATETNPVC 184
             DAT+ NPVC
Sbjct: 186 NDDATDDNPVC 196

[Close]

BLAST of Cla006506 vs. TrEMBL
Match: A0A0D2Q342_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G042400 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.8e-74
Identity = 144/186 (77.42%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSS--SFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 60
           MS NLV AF GLSLASSS  SF+KG+  SI     +SF   + FPLTI++AHKKGAGSTK
Sbjct: 6   MSFNLVGAFRGLSLASSSTSSFMKGEVGSIHKTAVVSFPRKSPFPLTIESAHKKGAGSTK 65

Query: 61  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQ+AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 66  NGRDSKGQRLGVKIYGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS-TDAT 180
           +GPDKKK+SVYPR +QPENPNSYRARKREYFR++RE++KA+KEGI+ QP+LVLAS  DAT
Sbjct: 126 FGPDKKKISVYPRVLQPENPNSYRARKREYFRMRREQRKAKKEGILVQPELVLASAADAT 185

Query: 181 ETNPVC 184
           + NPVC
Sbjct: 186 DDNPVC 191

[Close]

BLAST of Cla006506 vs. TrEMBL
Match: A0A061EDW6_THECC (Ribosomal protein large subunit 27 OS=Theobroma cacao GN=TCM_017226 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.8e-74
Identity = 146/186 (78.49%), Postives = 162/186 (87.10%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSS--SFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 60
           MS NLV AF GLSL+SSS  SFLKG+  SI      SF   + FPLTI++AHKKGAGSTK
Sbjct: 6   MSFNLVGAFRGLSLSSSSTSSFLKGELGSIPKTATASFPRKSPFPLTIESAHKKGAGSTK 65

Query: 61  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDS+GQRLGVKIFGDQ AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 66  NGRDSRGQRLGVKIFGDQAAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS-TDAT 180
           +GPD+KKVSVYPR VQPENPNSYRARKREYFR++RER+KARKEG  A+P+LVLAS  DAT
Sbjct: 126 FGPDRKKVSVYPRVVQPENPNSYRARKREYFRMRRERRKARKEGSPAEPELVLASAADAT 185

Query: 181 ETNPVC 184
           ++NPVC
Sbjct: 186 DSNPVC 191

[Close]

BLAST of Cla006506 vs. TrEMBL
Match: A5BCW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010521 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.2e-74
Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 1


Query: 2   SLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFP-NTFPLTIQNAHKKGAGSTKNG 61
           SLNLV AF GLSL+S+SSFL+GD  SI     L  SFP  + PLTI++AHKKGAGSTKNG
Sbjct: 3   SLNLVGAFKGLSLSSTSSFLRGDLGSITGSSKLCVSFPLKSLPLTIESAHKKGAGSTKNG 62

Query: 62  RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 121
           RDS+GQRLGVKI+GDQ+AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK+G
Sbjct: 63  RDSRGQRLGVKIYGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 122

Query: 122 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS-TDATET 181
           PD+KK+SVYP  +QPENPNS RA+KREYFR+QRERKKARKEGIV QPQLVLAS  +AT+ 
Sbjct: 123 PDRKKISVYPXVLQPENPNSCRAKKREYFRMQRERKKARKEGIVPQPQLVLASANEATDG 182

Query: 182 NPVC 184
           NP+C
Sbjct: 183 NPIC 186

[Close]

BLAST of Cla006506 vs. NCBI nr
Match: gi|659081447|ref|XP_008441337.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 4.3e-92
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 60
           M+LNLVA+F GLSLASSSSF KGDF SI TPPNLS SFPNTFPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLVASFRGLSLASSSSFFKGDFGSIHTPPNLSLSFPNTFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLILASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Cla006506 vs. NCBI nr
Match: gi|449441696|ref|XP_004138618.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 1.0e-88
Identity = 165/183 (90.16%), Postives = 173/183 (94.54%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSSFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTKNG 60
           M+LNL+++F GLSLASSSSF KGDF SI T P LS SFPN FPLTI+NAHKKGAGSTKNG
Sbjct: 1   MTLNLLSSFKGLSLASSSSFFKGDFGSIHTSPKLSVSFPNIFPLTIENAHKKGAGSTKNG 60

Query: 61  RDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120
           RDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG
Sbjct: 61  RDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYG 120

Query: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLASTDATETN 180
           PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGI+AQPQL+LASTD  ETN
Sbjct: 121 PDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLLLASTDDVETN 180

Query: 181 PVC 184
           PVC
Sbjct: 181 PVC 183

[Close]

BLAST of Cla006506 vs. NCBI nr
Match: gi|703159931|ref|XP_010112373.1| (50S ribosomal protein L27 [Morus notabilis])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 151/191 (79.06%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSSS-----FLKGDFRSIQTPPN-LSFSFPNTFPLTIQNAHKKGA 60
           MS NLV AF GLS++SSSS     F++G+F S+   PN LSFS P  FPL I++AHKKGA
Sbjct: 6   MSFNLVGAFKGLSMSSSSSSSSSSFVRGNFGSLVVGPNKLSFSCPQRFPLIIESAHKKGA 65

Query: 61  GSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 120
           GSTKNGRDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV
Sbjct: 66  GSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLV 125

Query: 121 KFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAST 180
           KFEK+GPD+KK+SVYPREVQPENPNSYRARK+EYFR+QRER+KAR+EGIV +PQLVLAS 
Sbjct: 126 KFEKFGPDRKKISVYPREVQPENPNSYRARKKEYFRMQRERRKARQEGIVPEPQLVLASA 185

Query: 181 --DATETNPVC 184
             DAT+ NPVC
Sbjct: 186 NDDATDDNPVC 196

[Close]

BLAST of Cla006506 vs. NCBI nr
Match: gi|823168492|ref|XP_012483971.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic [Gossypium raimondii])

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 144/186 (77.42%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSS--SFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 60
           MS NLV AF GLSLASSS  SF+KG+  SI     +SF   + FPLTI++AHKKGAGSTK
Sbjct: 6   MSFNLVGAFRGLSLASSSTSSFMKGEVGSIHKTAVVSFPRKSPFPLTIESAHKKGAGSTK 65

Query: 61  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDSKGQRLGVKI+GDQ+AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 66  NGRDSKGQRLGVKIYGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS-TDAT 180
           +GPDKKK+SVYPR +QPENPNSYRARKREYFR++RE++KA+KEGI+ QP+LVLAS  DAT
Sbjct: 126 FGPDKKKISVYPRVLQPENPNSYRARKREYFRMRREQRKAKKEGILVQPELVLASAADAT 185

Query: 181 ETNPVC 184
           + NPVC
Sbjct: 186 DDNPVC 191

[Close]

BLAST of Cla006506 vs. NCBI nr
Match: gi|590647422|ref|XP_007031897.1| (Ribosomal protein large subunit 27 [Theobroma cacao])

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 146/186 (78.49%), Postives = 162/186 (87.10%), Query Frame = 1


Query: 1   MSLNLVAAFTGLSLASSS--SFLKGDFRSIQTPPNLSFSFPNTFPLTIQNAHKKGAGSTK 60
           MS NLV AF GLSL+SSS  SFLKG+  SI      SF   + FPLTI++AHKKGAGSTK
Sbjct: 6   MSFNLVGAFRGLSLSSSSTSSFLKGELGSIPKTATASFPRKSPFPLTIESAHKKGAGSTK 65

Query: 61  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120
           NGRDS+GQRLGVKIFGDQ AKPG+IIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 66  NGRDSRGQRLGVKIFGDQAAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125

Query: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIVAQPQLVLAS-TDAT 180
           +GPD+KKVSVYPR VQPENPNSYRARKREYFR++RER+KARKEG  A+P+LVLAS  DAT
Sbjct: 126 FGPDRKKVSVYPRVVQPENPNSYRARKREYFRMRRERRKARKEGSPAEPELVLASAADAT 185

Query: 181 ETNPVC 184
           ++NPVC
Sbjct: 186 DSNPVC 191

The following BLAST results are available for this feature:

BLAST of Cla006506 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK27_TOBAC	4.2e-71	80.24	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1	[more]
RK27_ARATH	1.5e-68	70.83	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 S...	[more]
RK27_ORYSJ	5.0e-64	67.88	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL2...	[more]
RL27_NITSB	4.0e-29	71.43	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=...	[more]
RL27_TRIEI	2.9e-27	67.07	50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmA PE...	[more]

BLAST of Cla006506 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ66_CUCSA	6.9e-89	90.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406670 PE=3 SV=1	[more]
W9SAM0_9ROSA	1.6e-77	79.06	50S ribosomal protein L27 OS=Morus notabilis GN=L484_010778 PE=3 SV=1	[more]
A0A0D2Q342_GOSRA	2.8e-74	77.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G042400 PE=3 SV=1	[more]
A0A061EDW6_THECC	2.8e-74	78.49	Ribosomal protein large subunit 27 OS=Theobroma cacao GN=TCM_017226 PE=3 SV=1	[more]
A5BCW1_VITVI	8.2e-74	77.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010521 PE=3 SV=1	[more]

BLAST of Cla006506 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081447\|ref\|XP_008441337.1\|	4.3e-92	92.90	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis melo]	[more]
gi\|449441696\|ref\|XP_004138618.1\|	1.0e-88	90.16	PREDICTED: 50S ribosomal protein L27, chloroplastic [Cucumis sativus]	[more]
gi\|703159931\|ref\|XP_010112373.1\|	2.3e-77	79.06	50S ribosomal protein L27 [Morus notabilis]	[more]
gi\|823168492\|ref\|XP_012483971.1\|	4.1e-74	77.42	PREDICTED: 50S ribosomal protein L27, chloroplastic [Gossypium raimondii]	[more]
gi\|590647422\|ref\|XP_007031897.1\|	4.1e-74	78.49	Ribosomal protein large subunit 27 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001684	Ribosomal_L27
IPR018261	Ribosomal_L27_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009735	response to cytokinin
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05050	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006506	Cla006506.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05050	WMU05050	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 76..116 score: 7.0
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 51..75 score: 1.9E-39coord: 76..100 score: 1.9E-39coord: 101..125 score: 1.9
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 48..131 score: 27
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 14..178 score: 2.3
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 49..128 score: 3.5
IPR001684	Ribosomal protein L27	TIGRFAMs	TIGR00062	TIGR00062	coord: 48..128 score: 1.1
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 81..95 scor
None	No IPR available	unknown	Coil	Coil	coord: 141..161 scor
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 67..131 score: 1.6
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 49..130 score: 3.45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006506	Cla97C11G214040	Watermelon (97103) v2	wmwmbB362
Cla006506	Csa2G406670	Cucumber (Chinese Long) v2	cuwmB157
Cla006506	MELO3C008191	Melon (DHL92) v3.5.1	mewmB328
Cla006506	ClCG11G007120	Watermelon (Charleston Gray)	wcgwmB108
Cla006506	CSPI02G25620	Wild cucumber (PI 183967)	cpiwmB161
Cla006506	Cucsa.087740	Cucumber (Gy14) v1	cgywmB102
Cla006506	CmaCh15G000760	Cucurbita maxima (Rimu)	cmawmB283
Cla006506	CmoCh15G000770	Cucurbita moschata (Rifu)	cmowmB274
Cla006506	Lsi03G003970	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006506	Cp4.1LG13g11300	Cucurbita pepo (Zucchini)	cpewmB196
Cla006506	Cp4.1LG01g25780	Cucurbita pepo (Zucchini)	cpewmB461
Cla006506	CsGy2G025250	Cucumber (Gy14) v2	cgybwmB151
Cla006506	MELO3C008191.2	Melon (DHL92) v3.6.1	medwmB325
Cla006506	Carg06048	Silver-seed gourd	carwmB0024
Cla006506	Carg24279	Silver-seed gourd	carwmB1010
Cla006506	CsaV3_2G034130	Cucumber (Chinese Long) v3	cucwmB170
Cla006506	Bhi04G001986	Wax gourd	wgowmB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006506	Cucurbita maxima (Rimu)	cmawmB737
Cla006506	Cucurbita moschata (Rifu)	cmowmB731