Cp4.1LG01g22560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAssimilatory nitrate reductase catalytic subunit
LocationCp4.1LG01 : 20153177 .. 20155074 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAAGGATTAGTTAATACATAAACCGATCGCAGCAGACACCATTCCGAAATCTTCTCTTCTCCATCTCTTTTCCCTCTCTCCTTCTTTTACCAAAACCCTACTGGTTTTTCCTCTCTCCTTCCCTGTTCTTCAACTCCTCGTCTCGTTAACTCCTTGCCATTTCTAGGTTTCGTCTGTTCGTCTTGTTTCAGAAAATGGGGCGTTTTAGATTAAAGCGACTGGGTGCTTCATTGTAGCCGACAATTGGATCCGTCTCGAAGATTATCTGTGAGTTTCGTTGATCACGACGATCATTCATTTTCCTCTGTGTTTTTCGTGTTTGGACTCGTAGTTTAGACAGGTTAATTGCTTGATTTGCAATAATGTGGATGTTTGTTCTATATTTGTATATATTTGCATCTGTTCTAGGTCATGAGTATGAATATATAATTGATTTGTATGGATTCAGTTGAAGAAATTGAAAAGTTTCAATGGATTAAAATGTCGAAAGTTAAATCTCATGTCTGAATTTCTAGGTTTAGGGTAAAAAATGAATTAGCTGAAGAATGATGATCTTATGATTGATTTAGTTATGTTTCTACCGAATCTTCCATTCATATCTCTGTTTGTGCAGCATTGTAGTAAGGAATACTTGGCAGGATTTTGGTTAATACATTGTGGAGGATATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCTGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGAGTCTACTAGAATCCAGAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTATTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCAAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTGTAAGTAATCCTACATCATAGACATAATACTTGAAATCTGAAGCTGAAACTGAGACATTGTGGCTATGAATTCTGTGCTTTTTGTTTGATCAGATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGCAATCGCTGGACCATCAATCTGTATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGATGATGACGACGACGACAAATCTACTACTTGTTCTACTCACATCTCGTCCTATTCAGCTCAGAGAAGCTTCAGCAGGAGATGCTAACTTTACACTATAGCTAATTAGTTCTCTCAAATGGGAAGAACATGGACTGATCCTACAAAGGGGAATCAGTTATCACTGTAATAAACTTTTTGTTTGTTTTGTTTTCAAGTTCTTCATCTGAAGCTGCATTCGAATAGTGAAATCTTTGCGATGGTGTTTTTCTAGCTTTGA

mRNA sequence

TGCAAGGATTAGTTAATACATAAACCGATCGCAGCAGACACCATTCCGAAATCTTCTCTTCTCCATCTCTTTTCCCTCTCTCCTTCTTTTACCAAAACCCTACTGGTTTTTCCTCTCTCCTTCCCTGTTCTTCAACTCCTCGTCTCGTTAACTCCTTGCCATTTCTAGGTTTCGTCTGTTCGTCTTGTTTCAGAAAATGGGGCGTTTTAGATTAAAGCGACTGGGTGCTTCATTGTAGCCGACAATTGGATCCGTCTCGAAGATTATCTCATTGTAGTAAGGAATACTTGGCAGGATTTTGGTTAATACATTGTGGAGGATATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCTGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGAGTCTACTAGAATCCAGAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTATTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCAAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGCAATCGCTGGACCATCAATCTGTATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGATGATGACGACGACGACAAATCTACTACTTGTTCTACTCACATCTCGTCCTATTCAGCTCAGAGAAGCTTCAGCAGGAGATGCTAACTTTACACTATAGCTAATTAGTTCTCTCAAATGGGAAGAACATGGACTGATCCTACAAAGGGGAATCAGTTATCACTGTAATAAACTTTTTGTTTGTTTTGTTTTCAAGTTCTTCATCTGAAGCTGCATTCGAATAGTGAAATCTTTGCGATGGTGTTTTTCTAGCTTTGA

Coding sequence (CDS)

ATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCTGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGAGTCTACTAGAATCCAGAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTATTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCAAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGCAATCGCTGGACCATCAATCTGTATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGA

Protein sequence

MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSPLQPKLDAESTRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQSVSNETTSSSRTMNFGSGWFSCLSWCRCR
Homology
[Close]
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match: A0A0A0KXK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G639470 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.3e-76
Identity = 178/316 (56.33%), Postives = 215/316 (68.04%), Query Frame = 1 

Query: 1   MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSP-LQPKL 60
           MD ++SF+ SK QL+ ++++    I +RS+SNSS TSDLS+DSAVSSIFQ D P LQ K 
Sbjct: 1   MDTTQSFKESKGQLDQVNHKETDAISDRSNSNSSCTSDLSQDSAVSSIFQSDPPVLQSKP 60

Query: 61  DAES----------------TRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPM 120
           D                   +RIQSSSRGS  IRLSG L NHDPNRIP+SIFS +PS+P 
Sbjct: 61  DVAEPLGAVQTVENQPVDSLSRIQSSSRGSSHIRLSGPLGNHDPNRIPVSIFSGRPSNPT 120

Query: 121 EWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKT 180
           EWSTASNESLFSIHVGN+SFSRE FNF+ KSGEL  N N+ Q LS+ PPF++P R ESK+
Sbjct: 121 EWSTASNESLFSIHVGNSSFSREHFNFF-KSGELLMNPNASQTLSNLPPFVEPLRAESKS 180

Query: 181 EIVVNVF--PEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQ 240
           EI V  F  P  ++ST   +   S+Q+V + +KEV  ++D+ R R S SNDSMNSSRSFQ
Sbjct: 181 EIAVKTFAEPVTSSSTAHPVSPTSSQNVADHKKEVTTTMDELRGRQSVSNDSMNSSRSFQ 240

Query: 241 FPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQ----SVSNETTSSSRTM 294
           FPLL  EGATPK+  SVSTDS    +Q     +S K QS  HQ      S++  S S   
Sbjct: 241 FPLLASEGATPKTTSSVSTDSGVTSQQQPSKLQSKKRQSAKHQLPELQSSSQAASPSPAT 300

[Close]
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match: A5C6V8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038105 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 95/281 (33.81%), Postives = 143/281 (50.89%), Query Frame = 1 

Query: 29  SHSNSSRTSDLSRDSAVSSIFQID---SPLQPKLDAESTRIQS-----------SSRGSP 88
           S ++SS  S+LS+ + +S+   I    +PL P     S    +           S+  SP
Sbjct: 17  STADSSEESNLSKSNVLSNSLVISEQAAPLTPPWPVSSLEAYTQSGVDGSMQNGSTTQSP 76

Query: 89  QIRLSGVLENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKS 148
            I+  G    +DPNRIP S+F+SKP++P+EWS AS+ESLFSIHVGN SFS E F    KS
Sbjct: 77  PIQTMGRSGGYDPNRIPSSVFASKPTTPLEWSVASSESLFSIHVGNASFSTE-FAQLGKS 136

Query: 149 GELTNNTNSPQNL---SSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTN 208
           GELT +    Q L   S  PP  + A ++  ++ +      +  S+      +  ++  +
Sbjct: 137 GELTKS----QELIFPSGLPPVTEAADMDRSSQDMEKGSGVRETSS-QTTKEVFRENAED 196

Query: 209 RRKEVIISVDDHRSRPS--ESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQH 268
             KE +   +  R+  S   S+ S+NS+ SF FP+L G G    S + V T+   QQ+Q 
Sbjct: 197 HGKEKMPPAEGFRNSASSHHSDGSINSTLSFAFPVLDGNGGRSISVK-VDTEKHQQQEQP 256

Query: 269 QPGTKSTKLQSLDHQSVSNETTSSSRTMNFGSGWFSCLSWC 291
           QP     + QSL H   + +  ++++       WFSC S C
Sbjct: 257 QP-QPQPQPQSLPHAPEATQNAAATK-------WFSCFSCC 282

[Close]
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match: A0A067JTI0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19945 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.7e-17
Identity = 83/257 (32.30%), Postives = 123/257 (47.86%), Query Frame = 1 

Query: 39  LSRDSAVSS--IFQIDSPLQPKLDAESTRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFS 98
           +S D  V S    ++     PK+  + +   + S G            +DPNRIP +IF+
Sbjct: 43  VSGDPLVESKGALEVSDNNNPKMSVQESSTTAQSAGG-----------YDPNRIPSAIFT 102

Query: 99  SKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDP 158
            KP+SPMEWS ASNESLFSIH+GNNSF+R+      KSGEL      P  +++SPP + P
Sbjct: 103 GKPASPMEWSLASNESLFSIHMGNNSFTRDHVYMLYKSGELP----KPDEMNNSPPNMFP 162

Query: 159 ARVESKTEIVVNVFPE---QAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDS 218
             +E++    + +  E   + A T  Q+P    + V+   K+   S +D R       +S
Sbjct: 163 V-METRKSGDLKMTEEKLTEPAKTETQLPG---KEVSGTSKKKAPSAEDVR-------NS 222

Query: 219 MNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQSVSNETTSS 278
            +S++SFQFP+L        S + V     +QQ+Q Q             Q  +      
Sbjct: 223 SSSTQSFQFPVLEANVGGSASVKVVMDKQPSQQRQQQ------------QQEEAQPQAPG 261

Query: 279 SRTMNFGSGWFSCLSWC 291
           +     G+ WFSC S C
Sbjct: 283 TPPKPAGNSWFSCFSCC 261

[Close]
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match: M5XD52_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009937mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.3e-16
Identity = 71/191 (37.17%), Postives = 104/191 (54.45%), Query Frame = 1 

Query: 17  IHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSPLQPKLDA----ESTRIQSSSRG 76
           +H E D   + R+ S  S +S  S  ++ S    ++S +  K D     E+T+    S+G
Sbjct: 15  VHFESDMVNYRRNSSFPSSSSSSSSSTSSSPRSSLESDVTDKADVNGSFETTQQGQESQG 74

Query: 77  SPQI-------RLSGVLENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSR 136
            P +        L+  L+ +DP+RIP SIF+SKPS+ M+WS ASNESLFS+HVGNNSFSR
Sbjct: 75  PPPLPEASSSQTLAWSLQRYDPSRIPTSIFASKPSTGMDWSVASNESLFSLHVGNNSFSR 134

Query: 137 EQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAIS 196
           EQF+   KSGELT     P  L   P  + P   E++T + + +   +  +   + P + 
Sbjct: 135 EQFSMLYKSGELT----YPDELFYIPTPL-PTVTEAET-VEMKIHNVEKETVENKDPNVE 194

[Close]
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match: B9IK82_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12980g PE=4 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 86/256 (33.59%), Postives = 125/256 (48.83%), Query Frame = 1 

Query: 42  DSAVSSIFQIDSPLQPKLDAESTRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSS 101
           +S+  S+F  + P    +    T IQ     SPQ+ + G    +DPNRIP SIF+ KPS+
Sbjct: 57  ESSQGSVFPAEVPSHNPV----TNIQVLPPPSPQLHVMGQPGGYDPNRIPSSIFA-KPSN 116

Query: 102 PMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVES 161
           P EWS ASN+SLFSI++GN SFSR+      KSGEL     +    +S  P I+    + 
Sbjct: 117 PAEWSVASNDSLFSIYMGNGSFSRDHAFMLYKSGELPRFDETGNASTSLSPVIEVENNDR 176

Query: 162 KTE-IVVNVFPEQAASTGAQIPAISTQSVTNRRKEV-----IISVDDHRSRPSESNDSMN 221
           K E I +++  ++  ST ++     + +     KEV      IS  +      E   S +
Sbjct: 177 KNEDISIDIKVKEEESTDSEEEESESTAEIRPTKEVPGATEKISCQEKMHLVEEIRVSFS 236

Query: 222 SS-RSFQFPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQSVSNETTSSS 281
           SS RSFQFPLL        S RS S +   +        K +  + L+ +S   ET  ++
Sbjct: 237 SSNRSFQFPLLDA-----TSGRSSSFNEVMK--------KHSSEKHLEQESQPAETPGTT 293

Query: 282 RTMNFGSGWFSCLSWC 291
           +    G+ WF C S C
Sbjct: 297 QKAE-GNSWFPCFSCC 293

[Close]
BLAST of Cp4.1LG01g22560 vs. TAIR10
Match: AT2G03630.1 (AT2G03630.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 70/232 (30.17%), Postives = 105/232 (45.26%), Query Frame = 1 

Query: 5   KSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSPLQPKLDAEST 64
           K+  L + +  +I++E    +   S S+SS +S LS    +      +S   P++ +   
Sbjct: 35  KTIPLQETETVIINSESHSRLSSSSSSSSSSSSYLSPPKDLPEEVLKESLNDPEISSPPV 94

Query: 65  RIQSSSRGSPQIRLSGVLENHDPNRIPLSIFS-SKPSSPMEWSTASNESLFSIHVGNNSF 124
           ++                  +DPNRIP S+F  SK + P EWS  SNESLFSIH+GNNSF
Sbjct: 95  QVMDRDNNG----------KYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSF 154

Query: 125 SREQFNFYTKSGELTNNTNSPQNLSSSP-------PFIDPARVESKTEIVVNVFPEQAAS 184
           +    +   KSGEL     S + L+ SP       P  +P  V  + ++V +   E+   
Sbjct: 155 TGYGGDL-MKSGEL---YKSGELLAYSPGLPMPPVPGSEPKPVVEEPKVVESDKEEKVVL 214

Query: 185 TGAQIPAISTQSVTNR---RKEVIISVDDHRSRPS-ESNDSMNSSRSFQFPL 225
                 + S +    R    KE   +V       S  SN S NS+ SF FP+
Sbjct: 215 VEETHTSSSDEEEGKRESHEKEQHPAVSWKTPTTSYRSNRSSNSAHSFSFPM 252

[Close]
BLAST of Cp4.1LG01g22560 vs. TAIR10
Match: AT5G39200.1 (AT5G39200.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-08
Identity = 67/213 (31.46%), Postives = 102/213 (47.89%), Query Frame = 1 

Query: 85  HDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTN--NTN 144
           ++P+RIP S+F++  +   EWS  SNESLFSIH+G++SFS+       KSGELTN   T 
Sbjct: 9   YEPDRIPHSVFATSVTPKQEWSIQSNESLFSIHMGDHSFSK-----MYKSGELTNFEYTA 68

Query: 145 SPQNLSSSPPFIDP--ARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTNRRKEVIISV 204
           SP  +S     ID   A  ++ T+ V     E    TG +   ++     + R+++ IS 
Sbjct: 69  SPY-ISYYNNNIDNKIAPTDAGTKEVNITMVETGPKTGNR-DGLTNVPKPDPRQQIPIS- 128

Query: 205 DDHRSRPSESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQS 264
               ++   S  S NS+ SF FP LG      K++ +  ++S  ++           L  
Sbjct: 129 ---PTKSCHSETSNNSTTSFAFPTLGEYQQERKTSLNTKSESGKRE-----------LSR 188

Query: 265 LDHQSVSNETTSSSRTMNFGS-GWFSCLSWCRC 293
           LD ++      S       G+ GW SC   C C
Sbjct: 189 LDSKTGLYPDDSKQGGAGAGAGGWLSC---CLC 196

[Close]
BLAST of Cp4.1LG01g22560 vs. TAIR10
Match: AT3G02125.1 (AT3G02125.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-07
Identity = 43/136 (31.62%), Postives = 61/136 (44.85%), Query Frame = 1 

Query: 82  LENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSRE-QFNFYTKSGELTNN 141
           L  +DP RIP S+FSSKP +  EWS ASNESLFSIH GN S S   +     +  E  + 
Sbjct: 86  LPGYDPTRIPSSVFSSKPGNSTEWSLASNESLFSIHDGNFSISTALRLAEIPRFEETVHV 145

Query: 142 TNSPQNLSSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTNRRKEVIISV 201
                ++   PP   P   E +T  +    P Q  ++ + I         N  +E +  V
Sbjct: 146 ITEINSVPLPPPVKKPNEYEKET--IAEKEPYQVENSNSDIE-------DNEEEEKMSEV 205

Query: 202 DDHRSRPSESNDSMNS 217
           +       E  D + +
Sbjct: 206 ESDDEHEEEQTDMIEA 212

[Close]
BLAST of Cp4.1LG01g22560 vs. TAIR10
Match: AT1G74220.1 (AT1G74220.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-07
Identity = 52/164 (31.71%), Postives = 75/164 (45.73%), Query Frame = 1 

Query: 84  NHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNS 143
           N  P RIP  +F+   S+  EWST SNESLFSIH+GNNSF+      Y KSGELT     
Sbjct: 84  NTPPYRIPSHVFARTTSTAPEWSTISNESLFSIHMGNNSFTGGD---YFKSGELT----F 143

Query: 144 PQNLSSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTNRRKEVIISVDDH 203
           PQ          P+ + S     +   P      GA   A   ++  +  K+   + +  
Sbjct: 144 PQ---------PPSPITSPLPSPLPSTPHNVNQGGAVGAAAEVKTPVDIGKK---AAETD 203

Query: 204 RSRPSESNDSMNSSRSFQFPLLGGEGA-----TPKSNRSVSTDS 243
           ++  +   D   ++ S +  ++  E A     T K +RSVS  S
Sbjct: 204 KAYRASKEDEQKAAASIREVIMANEAANNNNKTNKLDRSVSRRS 228

[Close]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match: gi|778707424|ref|XP_011656011.1| (PREDICTED: uncharacterized protein LOC105435613 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 1.8e-76
Identity = 178/316 (56.33%), Postives = 215/316 (68.04%), Query Frame = 1 

Query: 1   MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSP-LQPKL 60
           MD ++SF+ SK QL+ ++++    I +RS+SNSS TSDLS+DSAVSSIFQ D P LQ K 
Sbjct: 3   MDTTQSFKESKGQLDQVNHKETDAISDRSNSNSSCTSDLSQDSAVSSIFQSDPPVLQSKP 62

Query: 61  DAES----------------TRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPM 120
           D                   +RIQSSSRGS  IRLSG L NHDPNRIP+SIFS +PS+P 
Sbjct: 63  DVAEPLGAVQTVENQPVDSLSRIQSSSRGSSHIRLSGPLGNHDPNRIPVSIFSGRPSNPT 122

Query: 121 EWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKT 180
           EWSTASNESLFSIHVGN+SFSRE FNF+ KSGEL  N N+ Q LS+ PPF++P R ESK+
Sbjct: 123 EWSTASNESLFSIHVGNSSFSREHFNFF-KSGELLMNPNASQTLSNLPPFVEPLRAESKS 182

Query: 181 EIVVNVF--PEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQ 240
           EI V  F  P  ++ST   +   S+Q+V + +KEV  ++D+ R R S SNDSMNSSRSFQ
Sbjct: 183 EIAVKTFAEPVTSSSTAHPVSPTSSQNVADHKKEVTTTMDELRGRQSVSNDSMNSSRSFQ 242

Query: 241 FPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQ----SVSNETTSSSRTM 294
           FPLL  EGATPK+  SVSTDS    +Q     +S K QS  HQ      S++  S S   
Sbjct: 243 FPLLASEGATPKTTSSVSTDSGVTSQQQPSKLQSKKRQSAKHQLPELQSSSQAASPSPAT 302

[Close]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match: gi|700197334|gb|KGN52511.1| (hypothetical protein Csa_5G639470 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 1.8e-76
Identity = 178/316 (56.33%), Postives = 215/316 (68.04%), Query Frame = 1 

Query: 1   MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSP-LQPKL 60
           MD ++SF+ SK QL+ ++++    I +RS+SNSS TSDLS+DSAVSSIFQ D P LQ K 
Sbjct: 1   MDTTQSFKESKGQLDQVNHKETDAISDRSNSNSSCTSDLSQDSAVSSIFQSDPPVLQSKP 60

Query: 61  DAES----------------TRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPM 120
           D                   +RIQSSSRGS  IRLSG L NHDPNRIP+SIFS +PS+P 
Sbjct: 61  DVAEPLGAVQTVENQPVDSLSRIQSSSRGSSHIRLSGPLGNHDPNRIPVSIFSGRPSNPT 120

Query: 121 EWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKT 180
           EWSTASNESLFSIHVGN+SFSRE FNF+ KSGEL  N N+ Q LS+ PPF++P R ESK+
Sbjct: 121 EWSTASNESLFSIHVGNSSFSREHFNFF-KSGELLMNPNASQTLSNLPPFVEPLRAESKS 180

Query: 181 EIVVNVF--PEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQ 240
           EI V  F  P  ++ST   +   S+Q+V + +KEV  ++D+ R R S SNDSMNSSRSFQ
Sbjct: 181 EIAVKTFAEPVTSSSTAHPVSPTSSQNVADHKKEVTTTMDELRGRQSVSNDSMNSSRSFQ 240

Query: 241 FPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQ----SVSNETTSSSRTM 294
           FPLL  EGATPK+  SVSTDS    +Q     +S K QS  HQ      S++  S S   
Sbjct: 241 FPLLASEGATPKTTSSVSTDSGVTSQQQPSKLQSKKRQSAKHQLPELQSSSQAASPSPAT 300

[Close]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match: gi|659118928|ref|XP_008459383.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-76
Identity = 179/315 (56.83%), Postives = 214/315 (67.94%), Query Frame = 1 

Query: 1   MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSP-LQPKL 60
           MD ++SF+ SK QL+ ++++    I +RS+S+SS TSDLS+DSAVSSIFQ D P LQ K 
Sbjct: 1   MDSTQSFKQSKGQLDQVNHKETDAISDRSNSSSSCTSDLSQDSAVSSIFQSDPPVLQSKS 60

Query: 61  DAES----------------TRIQSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPM 120
           D                   +RIQSSSRGS  IRLSG L NHDPNRIP+SIFS +PS+PM
Sbjct: 61  DVAEPLGAVQTVENQSAGSLSRIQSSSRGSSHIRLSGALGNHDPNRIPVSIFSGRPSNPM 120

Query: 121 EWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFIDPARVESKT 180
           EWSTASNESLFSIHVGNNSFSRE FNF+ KSGEL  N NS Q LS+ PPF++P R +SK+
Sbjct: 121 EWSTASNESLFSIHVGNNSFSREHFNFF-KSGELLMNPNSSQTLSNLPPFVEPLRADSKS 180

Query: 181 EIVV--NVFPEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQ 240
           EI V  +  P  +AST   I   S+ +V + +KEV  ++D+ R R S SNDSMNSSRSFQ
Sbjct: 181 EITVKTSADPVTSASTAPPISPTSSHNVADHKKEVTTTMDELRGRQSVSNDSMNSSRSFQ 240

Query: 241 FPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLQSLDHQ---SVSNETTSSSRTMN 294
           FPLL  EGATPK+  SVSTDS     Q     +S K QS  HQ     S+   +SS   N
Sbjct: 241 FPLLASEGATPKTTSSVSTDSGATSHQQPSKLQSKKRQSAKHQLPELQSSSQAASSPATN 300

[Close]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match: gi|698536901|ref|XP_009764660.1| (PREDICTED: circumsporozoite protein [Nicotiana sylvestris])

HSP 1 Score: 109.8 bits (273), Expect = 8.3e-21
Identity = 116/358 (32.40%), Postives = 158/358 (44.13%), Query Frame = 1 

Query: 4   SKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSPLQPKLDAES 63
           S S     ++L     +P G ++ +S  +SS    LS   A SS     SP  P    + 
Sbjct: 42  SPSSSEDSLELNTSRKDPLGDLYTKSEKDSS----LSPSPASSS-----SPDVPNQTPQW 101

Query: 64  TRIQSSSRG--------------------SPQIRLSGVLENHDPNRIPLSIFSSKPSSPM 123
           + I +S RG                    SP I   G    +DPNRIP S+FSSKP++PM
Sbjct: 102 SMISASPRGEMEALPFPDEWNGANPSPMKSPPIHTMGHPPGYDPNRIPSSVFSSKPNNPM 161

Query: 124 EWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNN---TNSPQNLSSSPPFIDPARVE 183
           EWSTASNESLFSIH+GNNSFSR+QFN   +SGELT     +NSP N  ++ P +     +
Sbjct: 162 EWSTASNESLFSIHMGNNSFSRDQFNMMYRSGELTKPEEWSNSPANPYNAQPEVKSNEKK 221

Query: 184 SKTE------IVVNVFPEQAASTGAQIPAISTQSVT-----------NRRKEVIISVDD- 243
           S         + V    E  +++  ++PA+  + V            N  KE   +VD+ 
Sbjct: 222 SLPPNLPLPLVEVATDKEVKSASVVEVPAMQEKIVESPKIVFVENHENNSKEKTSNVDEV 281

Query: 244 ---------------------HRSRPSESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTD 293
                                H S P  SN+S NSS SF FP+L  +     S ++ S  
Sbjct: 282 QHTASAPHKSDGNVVPPTEASHASSPRLSNESGNSSSSFAFPVLLNDAGKTGSLKAPSAK 341

[Close]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match: gi|147803535|emb|CAN77667.1| (hypothetical protein VITISV_038105 [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 95/281 (33.81%), Postives = 143/281 (50.89%), Query Frame = 1 

Query: 29  SHSNSSRTSDLSRDSAVSSIFQID---SPLQPKLDAESTRIQS-----------SSRGSP 88
           S ++SS  S+LS+ + +S+   I    +PL P     S    +           S+  SP
Sbjct: 17  STADSSEESNLSKSNVLSNSLVISEQAAPLTPPWPVSSLEAYTQSGVDGSMQNGSTTQSP 76

Query: 89  QIRLSGVLENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKS 148
            I+  G    +DPNRIP S+F+SKP++P+EWS AS+ESLFSIHVGN SFS E F    KS
Sbjct: 77  PIQTMGRSGGYDPNRIPSSVFASKPTTPLEWSVASSESLFSIHVGNASFSTE-FAQLGKS 136

Query: 149 GELTNNTNSPQNL---SSSPPFIDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTN 208
           GELT +    Q L   S  PP  + A ++  ++ +      +  S+      +  ++  +
Sbjct: 137 GELTKS----QELIFPSGLPPVTEAADMDRSSQDMEKGSGVRETSS-QTTKEVFRENAED 196

Query: 209 RRKEVIISVDDHRSRPS--ESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQH 268
             KE +   +  R+  S   S+ S+NS+ SF FP+L G G    S + V T+   QQ+Q 
Sbjct: 197 HGKEKMPPAEGFRNSASSHHSDGSINSTLSFAFPVLDGNGGRSISVK-VDTEKHQQQEQP 256

Query: 269 QPGTKSTKLQSLDHQSVSNETTSSSRTMNFGSGWFSCLSWC 291
           QP     + QSL H   + +  ++++       WFSC S C
Sbjct: 257 QP-QPQPQPQSLPHAPEATQNAAATK-------WFSCFSCC 282

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXK8_CUCSA1.3e-7656.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G639470 PE=4 SV=1[more]
A5C6V8_VITVI1.3e-1733.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038105 PE=4 SV=1[more]
A0A067JTI0_JATCU6.7e-1732.30Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19945 PE=4 SV=1[more]
M5XD52_PRUPE4.3e-1637.17Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009937mg PE=4 SV=1[more]
B9IK82_POPTR1.8e-1433.59Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12980g PE=4 SV=2[more]
BLAST of Cp4.1LG01g22560 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03630.12.0e-0930.17 unknown protein[more]
AT5G39200.16.6e-0831.46 unknown protein[more]
AT3G02125.14.3e-0731.62 unknown protein[more]
AT1G74220.19.5e-0731.71 unknown protein[more]
BLAST of Cp4.1LG01g22560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778707424|ref|XP_011656011.1|1.8e-7656.33PREDICTED: uncharacterized protein LOC105435613 [Cucumis sativus][more]
gi|700197334|gb|KGN52511.1|1.8e-7656.33hypothetical protein Csa_5G639470 [Cucumis sativus][more]
gi|659118928|ref|XP_008459383.1|3.1e-7656.83PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|698536901|ref|XP_009764660.1|8.3e-2132.40PREDICTED: circumsporozoite protein [Nicotiana sylvestris][more]
gi|147803535|emb|CAN77667.1|1.9e-1733.81hypothetical protein VITISV_038105 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22560.1Cp4.1LG01g22560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33673FAMILY NOT NAMEDcoord: 83..292
score: 5.4E-31coord: 29..65
score: 5.4
NoneNo IPR availablePANTHERPTHR33673:SF1GENOMIC DNA, CHROMOSOME 5, TAC CLONE:K3K3coord: 83..292
score: 5.4E-31coord: 29..65
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22560Cucsa.157860Cucumber (Gy14) v1cgycpeB0425
Cp4.1LG01g22560CmaCh15G002350Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22560CmaCh04G028000Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22560CmoCh04G029320Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22560Cla016519Watermelon (97103) v1cpewmB462
Cp4.1LG01g22560Csa5G639470Cucumber (Chinese Long) v2cpecuB415
Cp4.1LG01g22560MELO3C022033Melon (DHL92) v3.5.1cpemeB358
Cp4.1LG01g22560ClCG11G004790Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g22560CSPI05G29370Wild cucumber (PI 183967)cpecpiB414
Cp4.1LG01g22560Lsi03G001700Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g22560MELO3C022033.2Melon (DHL92) v3.6.1cpemedB418
Cp4.1LG01g22560CsaV3_5G038510Cucumber (Chinese Long) v3cpecucB0517
Cp4.1LG01g22560Bhi06G000278Wax gourdcpewgoB0502
Cp4.1LG01g22560CsGy5G028830Cucumber (Gy14) v2cgybcpeB625
Cp4.1LG01g22560Carg02214Silver-seed gourdcarcpeB0373
Cp4.1LG01g22560Carg05882Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22560Silver-seed gourdcarcpeB0070
Cp4.1LG01g22560Silver-seed gourdcarcpeB0374
Cp4.1LG01g22560Cucumber (Chinese Long) v3cpecucB0472
Cp4.1LG01g22560Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g22560Cucurbita pepo (Zucchini)cpecpeB391
Cp4.1LG01g22560Cucumber (Gy14) v1cgycpeB0255
Cp4.1LG01g22560Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22560Wild cucumber (PI 183967)cpecpiB380
Cp4.1LG01g22560Cucumber (Chinese Long) v2cpecuB380
Cp4.1LG01g22560Bottle gourd (USVL1VR-Ls)cpelsiB330
Cp4.1LG01g22560Watermelon (Charleston Gray)cpewcgB387
Cp4.1LG01g22560Watermelon (97103) v1cpewmB449
Cp4.1LG01g22560Melon (DHL92) v3.5.1cpemeB391
Cp4.1LG01g22560Melon (DHL92) v3.6.1cpemedB455