Cp4.1LG01g22030 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g22030
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCytochrome c oxidase biogenesis protein Cmc1-like
LocationCp4.1LG01 : 20453117 .. 20455246 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTATTGAGTAAATAAGTTTATATAAAAACATCTAAATTTCACATTCGCTCGTTATTTTATTCATAAATATTATTAGATTAAACAGAATTCCAAGAGTGGGCTTCTAGTTCTAGCAAAACTAGGATTTAGGGTTCTTAGAGAAAAGATTAGAAAGAAGAGACGCGACTAAAAACTGGGGAGTGGAATTGATACTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGCAAGGTATTTAATCCAATCTTGCTTTCGCCCTTTTACCACCTGTTTAATCTGCTTTTGATTGCTGAGGAACATGATGCGTCTGTTCAATTTTTGAGTCTTGTATCTTGCAACTGCTGTTGAAACTTCTGGTATGTTTCCAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCGTTACGCTTCGAGGTATGCCGAATGCGTCTACGCCAAAACGCTATCTGTTGTTTTCAAGTGTCGCAATCAAGCTTAAGAACTGAACGATTGCCTTCGCCAATAGTGAGTCTCTGATTATTTTGCTTAGCTTTTGGGTAGTTGTATTGAATTTCATCTGCATTTTGTTCGCATTGTTTGTTCGGCTTCTCTTCTGTTCATAACAATGTGCATTATCATCGTTCCTCACACACCAATTATCATGTTTACGATACTGTTGTCCTGTGAAAGCATCTTCCTAGTAGACGCATTTTAAAACCGTGAGGTTGATGACAATATCTACTAGTGGTAGGTTTGGGCTGTTACAAATGGTATCAAAGTTAGTCACTAGACAGTGTTCTAGCGAGGACGCTGGCCTCAAGGGGGTGGATTGTGAGATCCCATATTGATTGGAGAGGGGAACAAAACATTTCGTGTGGAACCATCTCCCTACCAAACATGTTTTAAAACCATGAGGCTGATAATCATACGCAACGGGCCAAAGCAGACAATATCTACTAGCGGTGGGCTTGAGTTGTTACAATTTGCCTTAGAATGAATTTTGAGAAGGGGCAAAAATGGCCGTGAGCGTATTATGGCATGTGCGAAACAAATATCTGATAGTGGAAAGGTGATGCTATACACAAGATGGATGTTCAAGCAAGCCTTTATAAAGACGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGGTGATGCAGTCTTATGCCAAGACTCATTTTGAGTGTAGTGAGTTGTAGAGTGTGTGGGCAACGGTGCATCCAGGATGCAATGGCCTTGTCTGCGTAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGTCTTTTGGGAGGATAAGCTTTAGACTTAGCCAACTATGGGCTAGAAGGAGCTCATTTTGAGTAGCTTGAATGAACGCAACAAAGTGAAGTTGGTATCAAAAGGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCATTCTTAATTCTAATGGCCTCTTCTGTAGCGTTTTTTTATAGCTATAATAGAGTATGATACTATAGTTTATATAAGTTGCATTTATTTGTTTACTATTAGTTTTTGGGCTAGAATGCGCACTTCCTTTTACTGGTATTTGACCTCTCCTAGCAAGATGAGAACCTTTTTATCTATGGTTATGGTACGCATTCCTTTCAAAAACGGAAACACTATGCTATGGATGCACAAATAAAGGTAGGGTCCTTCTACGATCCTTGCAAACTTTTACAAACAAAACTAATTTAACAAATGATTCCAATCAAGAGCTAGTTAAAGGCCTCTTGAATTTTCTTTGTTTTGCTTCTTGTAATTGCTCTTGGATCAGTGATTGGATTCATATCATGTTTTCTTTTCATTTTCCAGCACCGACGACGACGACGTGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATACATGGCCGTTAACATTCATTCTTAAAGGTCGGTCAAGATTCATAACCTTGACACTTCAAATGTATATACTTTTCGTATTAGGACGATAGTCTAA

mRNA sequence

ATGAGATTAGAAAGAAGAGACGCGACTAAAAACTGGGGAGTGGAATTGATACTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGCAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCGTTACGCTTCGAGGTATGCCGAATGCGTCTACGCCAAAACGCTATCTGTTGTTTTCAAGACGATAGTCTAA

Coding sequence (CDS)

ATGAGATTAGAAAGAAGAGACGCGACTAAAAACTGGGGAGTGGAATTGATACTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGCAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCGTTACGCTTCGAGGTATGCCGAATGCGTCTACGCCAAAACGCTATCTGTTGTTTTCAAGACGATAGTCTAA

Protein sequence

MRLERRDATKNWGVELILLIPVLLWLSKMGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFKTIV
Homology
[Close]
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match: A0A0A0KVX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644540 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECDRYAS+YAEC Y +TLSVVFK
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFK 53

[Close]
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match: A0A0J8D2W2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026620 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECD YA++YAEC Y +TLSVV+K
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDDYAAKYAECAYGRTLSVVWK 53

[Close]
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match: A0A0S3T902_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G099200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+QDARENHVKKK E+ALRSKMKQKAL+ECDRY ++YAEC   KTLSVV++
Sbjct: 1  MGYIQDARENHVKKKVEEALRSKMKQKALKECDRYTAKYAECASGKTLSVVWR 53

[Close]
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match: A0A0L9VM55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g194000 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+QDARENHVKKK E+ALRSKMKQKAL+ECDRY ++YAEC   KTLSVV++
Sbjct: 1  MGYIQDARENHVKKKVEEALRSKMKQKALKECDRYTAKYAECASGKTLSVVWR 53

[Close]
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match: V7C0J3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G064400g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVF 81
          MGY+QDARENHVKKK E+ALRSKMKQKAL+ECDRY ++YAEC   KTLS+V+
Sbjct: 1  MGYIQDARENHVKKKVEEALRSKMKQKALKECDRYTAKYAECAAGKTLSLVW 52

[Close]
BLAST of Cp4.1LG01g22030 vs. TAIR10
Match: AT5G16060.1 (AT5G16060.1 Cytochrome c oxidase biogenesis protein Cmc1-like)

HSP 1 Score: 70.5 bits (171), Expect = 5.7e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 

Query: 31 YLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVF 81
          Y++ ARENHVKKK E+ALRSKMK KAL ECD+Y S+YA+C   +T SVV+
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVW 53

[Close]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match: gi|449447494|ref|XP_004141503.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-16
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECDRYAS+YAEC Y +TLSVVFK
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFK 53

[Close]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match: gi|659119082|ref|XP_008459466.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 8.8e-16
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECD YAS+YAEC Y +TLSV+FK
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFK 53

[Close]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match: gi|731315741|ref|XP_010692765.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-15
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECD YA++YAEC Y +TLSVV+K
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDDYAAKYAECAYGRTLSVVWK 53

[Close]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match: gi|950931319|ref|XP_014506574.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Vigna radiata var. radiata])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+QDARENHVKKK E+ALRSKMKQKAL+ECDRY ++YAEC   KTLSVV++
Sbjct: 1  MGYIQDARENHVKKKVEEALRSKMKQKALKECDRYTAKYAECASGKTLSVVWR 53

[Close]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match: gi|1009127189|ref|XP_015880562.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Ziziphus jujuba])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 29 MGYLQDARENHVKKKAEQALRSKMKQKALRECDRYASRYAECVYAKTLSVVFK 82
          MGY+Q+ARENHVKKK E+ALRSKMKQKAL+ECD YAS+YAEC   +TLSVV+K
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECATGRTLSVVWK 53

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g22030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g22030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVX6_CUCSA1.2e-1683.02Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644540 PE=4 SV=1[more]
A0A0J8D2W2_BETVU6.8e-1577.36Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026620 PE=4 S... [more]
A0A0S3T902_PHAAN1.2e-1477.36Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G099200 PE=... [more]
A0A0L9VM55_PHAAN1.2e-1477.36Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g194000 PE=4 SV=1[more]
V7C0J3_PHAVU4.4e-1476.92Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G064400g PE=4 SV=1[more]
BLAST of Cp4.1LG01g22030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16060.15.7e-1366.00 Cytochrome c oxidase biogenesis protein Cmc1-like[more]
BLAST of Cp4.1LG01g22030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447494|ref|XP_004141503.1|1.8e-1683.02PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis sativus][more]
gi|659119082|ref|XP_008459466.1|8.8e-1679.25PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo][more]
gi|731315741|ref|XP_010692765.1|9.7e-1577.36PREDICTED: uncharacterized protein DDB_G0275933 [Beta vulgaris subsp. vulgaris][more]
gi|950931319|ref|XP_014506574.1|1.7e-1477.36PREDICTED: uncharacterized protein DDB_G0275933 [Vigna radiata var. radiata][more]
gi|1009127189|ref|XP_015880562.1|3.7e-1477.36PREDICTED: uncharacterized protein DDB_G0275933 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g22030.1Cp4.1LG01g22030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePFAMPF08583Cmc1coord: 48..81
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g22030Cucsa.238070Cucumber (Gy14) v1cgycpeB0628
Cp4.1LG01g22030CmaCh15G001860Cucurbita maxima (Rimu)cmacpeB311
Cp4.1LG01g22030CmoCh15G001990Cucurbita moschata (Rifu)cmocpeB274
Cp4.1LG01g22030CmoCh04G029850Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g22030Csa5G644540Cucumber (Chinese Long) v2cpecuB447
Cp4.1LG01g22030MELO3C022093Melon (DHL92) v3.5.1cpemeB349
Cp4.1LG01g22030ClCG11G005400Watermelon (Charleston Gray)cpewcgB368
Cp4.1LG01g22030CSPI05G30060Wild cucumber (PI 183967)cpecpiB447
Cp4.1LG01g22030Lsi03G002360Bottle gourd (USVL1VR-Ls)cpelsiB350
Cp4.1LG01g22030MELO3C022093.2Melon (DHL92) v3.6.1cpemedB409
Cp4.1LG01g22030CsaV3_5G039180Cucumber (Chinese Long) v3cpecucB0553
Cp4.1LG01g22030Bhi06G000090Wax gourdcpewgoB0506
Cp4.1LG01g22030CsGy5G029440Cucumber (Gy14) v2cgybcpeB660
Cp4.1LG01g22030Carg02177Silver-seed gourdcarcpeB0368
Cp4.1LG01g22030Carg05933Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g22030Cp4.1LG13g07750Cucurbita pepo (Zucchini)cpecpeB210
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g22030Cucurbita pepo (Zucchini)cpecpeB074
Cp4.1LG01g22030Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g22030Cucumber (Gy14) v1cgycpeB0344
Cp4.1LG01g22030Cucumber (Gy14) v1cgycpeB0627
Cp4.1LG01g22030Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g22030Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g22030Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g22030Cucurbita moschata (Rifu)cmocpeB614
Cp4.1LG01g22030Wild cucumber (PI 183967)cpecpiB412
Cp4.1LG01g22030Cucumber (Chinese Long) v2cpecuB413
Cp4.1LG01g22030Bottle gourd (USVL1VR-Ls)cpelsiB328
Cp4.1LG01g22030Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g22030Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g22030Watermelon (Charleston Gray)cpewcgB383
Cp4.1LG01g22030Watermelon (97103) v1cpewmB459
Cp4.1LG01g22030Watermelon (97103) v1cpewmB445
Cp4.1LG01g22030Watermelon (97103) v1cpewmB462
Cp4.1LG01g22030Cucumber (Gy14) v2cgybcpeB514
Cp4.1LG01g22030Silver-seed gourdcarcpeB0374
Cp4.1LG01g22030Silver-seed gourdcarcpeB0892
Cp4.1LG01g22030Cucumber (Chinese Long) v3cpecucB0509
Cp4.1LG01g22030Wax gourdcpewgoB0546