ClCG11G005400 (gene) Watermelon (Charleston Gray)

NameClCG11G005400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCytochrome c oxidase biogenesis protein Cmc1-like LENGTH=95
LocationCG_Chr11 : 5853607 .. 5857158 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGAAGCGGAATTGAGACTCGGAGTTAGCTTCGAACGTCCTACTTCCAACGAAACCAAGGGGATCTGACCGCTAATTCCTAGCTCCTATTGCTTTGTGAAATGGGTTACATACAGGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGGTATTATAAAATGTTCATCTCATCCTCTACATCTTTAATCTGCTTTTGATTGCTGATGGGTCAATTTAAATTTTGAGTCTAGTACATCTGCAAGTGGTGTAGAAAACTTTTGGAAATCTGGTGATGGTTTTTTTTTTTTTGTCCATTTCCAGCTTTGCGCAGCAAAATGAAGCAGAAAGCGTTGAAGGAGTGCGATCATTACGCTTCGAAATATGCTGAATGCGCCTACGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTAATCAAGCTAAAGAATTGAACAATTGCCTTCACCTATAGTGAGTCTCTGCTTGTTTCGTTTAGCTTTTTAATGGGTATGTTCAATTTCAGCTGCGTTTTATTCAAATTGTTCGGCTTCTCTTCTGTTCATATTAGTGTGCATTATCATTGTTCCTCAAGCACCAATGATCATGTTTAGTCTAATTGATAAACATACACTGGTTGTGTTGCTTGTTAATTGAGCGTTTCAGTGGTAATAACCTTGGGTGCTGGGTGTGATTTGTGAAAAATCAATCAGTATTTCCTCTTTTTGTGACTACAATCTTGCTTCTCTTATCTCACAGTAGAATAGCATTATCTAATCCCTCATGGCACTAGTTGCCCTTTTGTATTTCATACCATCGACGAAATTCTCACTAAACGTTTATCATTAGAAAAAAGAAAAAGAAAAAGAAAAAGAAATGTGATTTGTGAAAAATCTAGCATGGATCGTAATTTTGAAGGATCGAGTGTTTAGAGACATGTTGGTGGCACATGAAAGTAAGTCAAGAGCTAAAAAAAATTTATAATTCAAGGAAGATTCAACCCAAACAATGAGGAAATTGCTCTAATACCAGAACACGTGTTGAATAAACAGAGTTCTCTTATTCATATCAGGAGGAAACTCCACTTAATTAAATACAAATACAAATACAAATGTCCTATATATAGCAGAACAAAAGGGAACAAACTAAGCAACTGAATAACAAGAAACTAACAGAATAATAACAGCTGTACAATTAGTTTACAAGTCCCTTAATACTGGAGTCATATGGCCCAACATGTGACTCTTATGGGGATGAATAACTACTTAGTTCTTACCACTTTCCTTGTTCATATATATTAAAAAGGATTTTTCTTGGAATGTATTTTGAGTGGGGGCGGTGAGGTGGCTCTTCATCGCCTACAGGCCATGAGTCATCTATGGAATGTATTATGGCATGGGCGAGTCAGCATTAAGTGACTTTTGTCGGTAGCAAAAAAACTTTTAGCAGATGTCAATTGGCATGTACTGTGCTTCTTCCTATGGACTAGAAGTTTCAGTAGAGGCTATAGCCCTGAAACAAATATCTATGGCTCAACACAAGCGTTAAGTGATGCTATACCACAAGATGGATGTTCAAGCAGGCCTTTACAAAAATGTAAGGGCTCATTGTTTGGTTATAAATATATGCCACAACCAAATGGCAGCGCTTATAGATGCCTCCATGTCATGATCTAGGTGGGGCAGTCATCTGCGGCAATTATCAACTAGCAAAATTAAAACAAATCTTGGCCTACCAGAGAAACAAGAGTCATCTTGGGTGTTATAATTTATAGAGTGCCCCAGGCAGTGGTGCATCTAGGATGCAATGGCCATGTCCTTGTTAAGATTGTGTTAGTTATCTCTGCTGTATTGTTGTTGAAGTATATTTAGCCTTATTGTTAGAAGGTTAGTTGGGCTGTTATTTCTCTTGGGCATCTATTTAGAGAACCCTGTATTGCTTTTGTCGATACTGATCAAGAATCAGCTCAGTTCTTGAGTAGAGGCAAGATGAAAACCCTAAACCCAAGCTGGCTATTGGTGCATAGAGTAAAAAAGAATGCATGTACATACAACGTGCATGAGCAAGAGTCTGCTGGGAGAATGAGCTTTAGGTTAAGCCAACTATGGGCAAGAAGGTGCTCATTTGAGTAGCTTGAGTGAGTGCGACCAAGTGGACTCGGTATCAAAAGGAAGAACCCAGCATTGACTTTAACGGATGTAAGGATCTTGAATACAGTTTTGAGGCAGGAGTTGCGGCAGGTAATGATTCAGAGTAGTAGTACCTGTGCCACACGATCTAAGATGGTCTGATCAATATTGGTGATTTGATTGGAGAATTCATACCCCATTACAAAGAACCAAACGCTAGTGCTCTAGGGCTCAGGACTCGGATGTGTGGGCAGGAAAGACAAAAGACAGCAACCAACTGATGTTCTTTGTGAGAAGCTATTTGTCTAACTGAATGCCAAATAGCTTCGAGAAATCTTAATAGTTAGGGTTAAGGATATTATATGATCAGTTTTATATTACTATTGAATAGTGAACAACATTTTGTTGAATCGACACTTTGCCAACGGCGATACAATCTAAAGAAAAATTTTCATTCTGAAAATGGTTTTGCCTGGTTCCATTTTAATGGAGAGGAAGAAGATAAAAAAATTAGAGCTCCCTCTCTTTTGGGTGTGGAGGTGCTGGAGAGGGTTAGAGCCTTGTTGCACCACAAGGCACTATCAACGAGTGGGAGGGGGTAGGCGGGATGGGGGAGGGTGATAGTCTAAGAAATGGTTGACAAAAAGCAGCGTGCATCTCCAATTTAACTTGTGAGCAAATATTTAGTCTTCGCATAATATTCCTCAGTTAAGTTTTAGTTTTGGTCCTCTATTGCTTCCCCATGAGAGGGAAGAAGTTTTGTCATGCTCCTTACCATAGTTTTATTGAAATATAACACCCAATTGAGTTACCTAACAATCTAAGGATAGTAATGTTACTCATATTGGGCTTCATATAGGACAAGTATAAATTCAATTTTTCGTAACAATGCAAACATCACCATCAATCGAGAGCTTATATATCCTTACCCTAATTGTTCCTGTTTTGTTTTCCAGCACTAACGACTCCGTGTTGGAAGAGATGAAGCGGGAATATGCACTCCAACACGATGGGAAGCCGTGAGAAAGAGTATAACATCATTTAATGAGAAAACTGAAGAGTATTGTTATGTGTCGATCTCAGGTGCAGTTTCAGATGATGCTGTGTTGAATTTGTCACTTACATTAGTCAGAACTGAATGAAAGTTGAGGCTTTTTGCATTTTGTGATCTGAACAAGCAAAGGAACTCCGCTTTTTTGGCATAAGAATGATCTTTGATCTCTTCATGTATAAATTTCAGAGCTATTCTTCGTCAAATCTATAATCTTTTACCCCTTTGGCATCTTTACTAGGATTGAGTTGTCCTCGAGAATATAATTCCATGATCTTATTTATGGCCTTCATCGTTCTTGTCTTGCTCGGAGTTTAAAAAGTTCAGCGAATAGCATAAAGTTGTAATTCCATTAGACCTGTTATTCTAATGTAAAATTTTCAATCTCAG

mRNA sequence

TGGGAAGCGGAATTGAGACTCGGAGTTAGCTTCGAACGTCCTACTTCCAACGAAACCAAGGGGATCTGACCGCTAATTCCTAGCTCCTATTGCTTTGTGAAATGGGTTACATACAGGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAAGCGTTGAAGGAGTGCGATCATTACGCTTCGAAATATGCTGAATGCGCCTACGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTAATCAAGCTAAAGAATTGAACAATTGCCTTCACCTATAAGAACCCTGTATTGCTTTTGTCGATACTGATCAAGAATCAGCTCAGTTCTTGAGTAGAGGCAAGATGAAAACCCTAAACCCAAGCTGGCTATTGGTGCATAGAGTAAAAAAGAATGCATGTACATACAACGTGCATGAGCAAGAGTCTGCTGGGAGAATGAGCTTTAGGTTAAGCCAACTATGGGCAAGAAGCACTAACGACTCCGTGTTGGAAGAGATGAAGCGGGAATATGCACTCCAACACGATGGGAAGCCGTGAGAAAGAGTATAACATCATTTAATGAGAAAACTGAAGAGTATTGTTATGTGTCGATCTCAGGTGCAGTTTCAGATGATGCTGTGTTGAATTTGTCACTTACATTAGTCAGAACTGAATGAAAGTTGAGGCTTTTTGCATTTTGTGATCTGAACAAGCAAAGGAACTCCGCTTTTTTGGCATAAGAATGATCTTTGATCTCTTCATGTATAAATTTCAGAGCTATTCTTCGTCAAATCTATAATCTTTTACCCCTTTGGCATCTTTACTAGGATTGAGTTGTCCTCGAGAATATAATTCCATGATCTTATTTATGGCCTTCATCGTTCTTGTCTTGCTCGGAGTTTAAAAAGTTCAGCGAATAGCATAAAGTTGTAATTCCATTAGACCTGTTATTCTAATGTAAAATTTTCAATCTCAG

Coding sequence (CDS)

ATGGGTTACATACAGGAAGCTCGAGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAAGCGTTGAAGGAGTGCGATCATTACGCTTCGAAATATGCTGAATGCGCCTACGGCAGAACGTTATCCGTCGTTTTCAAGTGTCGTAATCAAGCTAAAGAATTGAACAATTGCCTTCACCTATAA

Protein sequence

MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKELNNCLHL
BLAST of ClCG11G005400 vs. TrEMBL
Match: A0A0A0KVX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644540 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD YASKYAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLH 67
          LNNCLH
Sbjct: 61 LNNCLH 66

BLAST of ClCG11G005400 vs. TrEMBL
Match: A0A0J8D2W2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026620 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD YA+KYAECAYGRTLSVV+KCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDDYAAKYAECAYGRTLSVVWKCRQQAKE 60

Query: 61 LNNCLH 67
          LN+CLH
Sbjct: 61 LNSCLH 66

BLAST of ClCG11G005400 vs. TrEMBL
Match: W9RUZ3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008660 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.2e-27
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYA KYAECA GRT+SVV++CR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYALKYAECATGRTISVVWQCRQQAKE 60

Query: 61 LNNCLH 67
          LNNCLH
Sbjct: 61 LNNCLH 66

BLAST of ClCG11G005400 vs. TrEMBL
Match: A0A059AE81_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01478 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.0e-26
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 1   MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
           MGY+QEARENHVKKKVEEALRSKMKQKALKECD+YASKYAECA GRT SVV++CR QAKE
Sbjct: 39  MGYVQEARENHVKKKVEEALRSKMKQKALKECDYYASKYAECAVGRTFSVVWQCRKQAKE 98

Query: 61  LNNCLH 67
           LN+CLH
Sbjct: 99  LNDCLH 104

BLAST of ClCG11G005400 vs. TrEMBL
Match: A0A061EPI3_THECC (Cytochrome c oxidase biogenesis protein Cmc1-like OS=Theobroma cacao GN=TCM_019491 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-26
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGY+QEARENHVKKKVEEALRSKMKQKALKECDHY SKYA+CA GRT+S+V++CR QAKE
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDHYTSKYAQCAAGRTISIVWQCRKQAKE 60

Query: 61 LNNCLH 67
          LN+CLH
Sbjct: 61 LNDCLH 66

BLAST of ClCG11G005400 vs. TAIR10
Match: AT5G16060.1 (AT5G16060.1 Cytochrome c oxidase biogenesis protein Cmc1-like)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-24
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 1

Query: 3  YIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKELN 62
          Y+++ARENHVKKKVEEALRSKMK KAL ECD Y SKYA+CA GRT SVV+ CR QA+ELN
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELN 63

Query: 63 NCLH 67
           CLH
Sbjct: 64 TCLH 67

BLAST of ClCG11G005400 vs. NCBI nr
Match: gi|659119082|ref|XP_008459466.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSV+FKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKE 60

Query: 61 LNNCLHL 68
          LNNCLHL
Sbjct: 61 LNNCLHL 67

BLAST of ClCG11G005400 vs. NCBI nr
Match: gi|449447494|ref|XP_004141503.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD YASKYAECAYGRTLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLH 67
          LNNCLH
Sbjct: 61 LNNCLH 66

BLAST of ClCG11G005400 vs. NCBI nr
Match: gi|1009127189|ref|XP_015880562.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Ziziphus jujuba])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGY+QEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECA GRTLSVV+KCR QAKE
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECATGRTLSVVWKCRTQAKE 60

Query: 61 LNNCLH 67
          LN+CLH
Sbjct: 61 LNHCLH 66

BLAST of ClCG11G005400 vs. NCBI nr
Match: gi|731315741|ref|XP_010692765.1| (PREDICTED: uncharacterized protein DDB_G0275933 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD YA+KYAECAYGRTLSVV+KCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDDYAAKYAECAYGRTLSVVWKCRQQAKE 60

Query: 61 LNNCLH 67
          LN+CLH
Sbjct: 61 LNSCLH 66

BLAST of ClCG11G005400 vs. NCBI nr
Match: gi|703127348|ref|XP_010103808.1| (hypothetical protein L484_008660 [Morus notabilis])

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-27
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYA KYAECA GRT+SVV++CR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYALKYAECATGRTISVVWQCRQQAKE 60

Query: 61 LNNCLH 67
          LNNCLH
Sbjct: 61 LNNCLH 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KVX6_CUCSA1.0e-2998.48Uncharacterized protein OS=Cucumis sativus GN=Csa_5G644540 PE=4 SV=1[more]
A0A0J8D2W2_BETVU2.1e-2792.42Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026620 PE=4 S... [more]
W9RUZ3_9ROSA6.2e-2790.91Uncharacterized protein OS=Morus notabilis GN=L484_008660 PE=4 SV=1[more]
A0A059AE81_EUCGR4.0e-2687.88Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01478 PE=4 SV=1[more]
A0A061EPI3_THECC5.2e-2684.85Cytochrome c oxidase biogenesis protein Cmc1-like OS=Theobroma cacao GN=TCM_0194... [more]
Match NameE-valueIdentityDescription
AT5G16060.13.3e-2476.56 Cytochrome c oxidase biogenesis protein Cmc1-like[more]
Match NameE-valueIdentityDescription
gi|659119082|ref|XP_008459466.1|7.7e-3198.51PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo][more]
gi|449447494|ref|XP_004141503.1|1.5e-2998.48PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis sativus][more]
gi|1009127189|ref|XP_015880562.1|1.8e-2792.42PREDICTED: uncharacterized protein DDB_G0275933 [Ziziphus jujuba][more]
gi|731315741|ref|XP_010692765.1|3.0e-2792.42PREDICTED: uncharacterized protein DDB_G0275933 [Beta vulgaris subsp. vulgaris][more]
gi|703127348|ref|XP_010103808.1|8.8e-2790.91hypothetical protein L484_008660 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G005400.1ClCG11G005400.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePFAMPF08583Cmc1coord: 20..66
score: 4.6
NoneNo IPR availablePANTHERPTHR22977UPF0287 FAMILYcoord: 1..66
score: 8.8

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G005400Silver-seed gourdcarwcgB0019
ClCG11G005400Wax gourdwcgwgoB158
ClCG11G005400Cucurbita maxima (Rimu)cmawcgB619
ClCG11G005400Cucurbita maxima (Rimu)cmawcgB632
ClCG11G005400Cucurbita moschata (Rifu)cmowcgB621
ClCG11G005400Watermelon (97103) v1wcgwmB107
ClCG11G005400Cucurbita pepo (Zucchini)cpewcgB355