Cp4.1LG01g18980 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTwo-component response regulator
LocationCp4.1LG01 : 16277394 .. 16278797 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGTTGGTGGGGGGGATGTGGTTGTCCTAAAACATCAGAGGCAAACAGGCGCGCCCACGGCTGCTCGAAAATCAACCAACACTTTGATTTGGCAAAATCGATTAAACAATTGGTCAAGAGTCGCCCCCGTCTAAACCAAATCAACCTTGAAGATCCTCTCGATTCCGAATCAAATCTGTCGGATCTCGCTTTCCAACTGTCACATTCCAAGATTTTCCCTCCTACATCGAATCGATCTTCGCTCCTTCCATCCATAGATATAAAACTCCTTCGATTCATTCTCATTCTTATCAGTTCTCTTTCGATCTTCTTCTCCAATTCAAGTTCTCTGTCGCTGAAGAATCGCGATTCTACCAGCTATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGGTATTAATCGCTCCTTCCTGTTTCTGTTCACGATTGGATGTTTTTTTTCTTCTCCGATTCACGACTGATCGGTGTTTGTTTGTTCTGTTTTTCATTAGTTACTGCTGTTGATTCCGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCCTCAATTCAAGTATGTAGCCCTGATTTTCTCTCTTGCCTCGCGATTTTTGTTCGTTTTTGTTTCTTCTGTCTCTAACTTGTTCGATCATTTCTGTTTTCAGGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGTTTGCCCTAATTTCTTTTTCCTCCTTCCGATTCTACAGAGCAATTAAAAGAATCGAATCCACCGAGAATCAATAACTAATCCGTGCGATGAAATTGCAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTCAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGATGAAGAAGAAGAAGATGAACAACTCCTCAACTAATTTTAATTTTGATTTTAGTGATTCTGTAAAGAATTAGATCCCAAACTGACTACCATTAGCAAATCCTACACACAAATTTTCTCGGGAAACTAACAGAAAATCAAAGAATGTATAGATCTGCTGCTCATTTTTGTCTCTGATGATTTGATTTATGAAGTAATTTTTTGTTTCCTCTCTTTTTCTTTGGATTATCATTGCGAATCATTGTAAGAACAATCAAAATTGTTGATC

mRNA sequence

AGAAGTTGGTGGGGGGGATGTGGTTGTCCTAAAACATCAGAGGCAAACAGGCGCGCCCACGGCTGCTCGAAAATCAACCAACACTTTGATTTGGCAAAATCGATTAAACAATTGGTCAAGAGTCGCCCCCGTCTAAACCAAATCAACCTTGAAGATCCTCTCGATTCCGAATCAAATCTGTCGGATCTCGCTTTCCAACTGTCACATTCCAAGATTTTCCCTCCTACATCGAATCGATCTTCGCTCCTTCCATCCATAGATATAAAACTCCTTCGATTCATTCTCATTCTTATCAGTTCTCTTTCGATCTTCTTCTCCAATTCAAGTTCTCTGTCGCTGAAGAATCGCGATTCTACCAGCTATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCCTCAATTCAAGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTCAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGATGAAGAAGAAGAAGATGAACAACTCCTCAACTAATTTTAATTTTGATTTTAGTGATTCTGTAAAGAATTAGATCCCAAACTGACTACCATTAGCAAATCCTACACACAAATTTTCTCGGGAAACTAACAGAAAATCAAAGAATGTATAGATCTGCTGCTCATTTTTGTCTCTGATGATTTGATTTATGAAGTAATTTTTTGTTTCCTCTCTTTTTCTTTGGATTATCATTGCGAATCATTGTAAGAACAATCAAAATTGTTGATC

Coding sequence (CDS)

ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCCTCAATTCAAGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTCAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA

Protein sequence

MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN
Homology
[Close]
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match: ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 83/148 (56.08%), Postives = 101/148 (68.24%), Query Frame = 1 

Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHS------------------KLPPSIQESKSLKDIPVVIMSSENVPSRINRCL 122
                +Q                     L   I+ES  L+DIPVVIMSS+N+PSRINRCL
Sbjct: 61  ISTQSDQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCL 120

Query: 123 EEGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           EEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 EEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match: ORR10_ORYSJ (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 83/148 (56.08%), Postives = 101/148 (68.24%), Query Frame = 1 

Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHS------------------KLPPSIQESKSLKDIPVVIMSSENVPSRINRCL 122
                +Q                     L   I+ES  L+DIPVVIMSS+N+PSRINRCL
Sbjct: 61  ISTQSDQQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCL 120

Query: 123 EEGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           EEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 EEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match: ORR10_ORYSI (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 83/148 (56.08%), Postives = 101/148 (68.24%), Query Frame = 1 

Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHS------------------KLPPSIQESKSLKDIPVVIMSSENVPSRINRCL 122
                +Q                     L   I+ES  L+DIPVVIMSS+N+PSRINRCL
Sbjct: 61  ISTQSDQQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCL 120

Query: 123 EEGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           EEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 EEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match: ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 83/148 (56.08%), Postives = 101/148 (68.24%), Query Frame = 1 

Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHS------------------KLPPSIQESKSLKDIPVVIMSSENVPSRINRCL 122
                +Q                     L   I+ES  L+DIPVVIMSS+N+PSRINRCL
Sbjct: 61  ISTQSDQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCL 120

Query: 123 EEGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           EEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 EEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match: ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-33
Identity = 85/151 (56.29%), Postives = 99/151 (65.56%), Query Frame = 1 

Query: 7   VDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVD 66
           VD E+ RFHVLAVDDS IDRKLIE LLK SSY VT VDSG+KALE LGL ++    DD  
Sbjct: 4   VDAES-RFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE---GDDSS 63

Query: 67  DEQHSKLPPS-------------------------IQESKSLKDIPVVIMSSENVPSRIN 126
               S  P                           ++ S SLKDIPVVIMSSENVP+RIN
Sbjct: 64  SSPSSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARIN 123

Query: 127 RCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           RCLE+GAEEFFLKPV+L+D++KL+ HL+K K
Sbjct: 124 RCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150

[Close]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match: A0A0A0KQE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G434550 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.1e-46
Identity = 110/156 (70.51%), Postives = 116/156 (74.36%), Query Frame = 1 

Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 64
           + V VE+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+  D   D
Sbjct: 1   MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTD 60

Query: 65  ---VDDEQHS---------------------KLPPSIQESKSLKDIPVVIMSSENVPSRI 124
                D+ H                      +L   I+ESKSLKDIPVVIMSSENVPSRI
Sbjct: 61  SKIAPDQNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRI 120

Query: 125 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 156

[Close]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match: A0A067KWD7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 1 

Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDD----- 72
           +FHVLAVDDS IDRKLIERLLKTSSYHVTAVDSG+KALEFLGL E+  +D ++       
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTSVSPPG 67

Query: 73  EQHSKLPPS-------------------IQESKSLKDIPVVIMSSENVPSRINRCLEEGA 132
           + H  +  +                   I+ESKSLKDIPVVIMSSENVPSRINRCLEEGA
Sbjct: 68  DHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGA 127

Query: 133 EEFFLKPVQLSDVRKLRPHLIKEKS 134
           EEFFLKPVQLSDV KL+PHL+K K+
Sbjct: 128 EEFFLKPVQLSDVNKLKPHLMKGKA 152

[Close]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match: B9RGB1_RICCO (Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452640 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-39
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD------- 71
           ++FHVLAVDDS IDRKLIERLLKTSS+HVTAVDSG+KALEFLGL E+ + +++       
Sbjct: 7   SQFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEERRDS 66

Query: 72  ------VDDEQHSKLPPS-------------------IQESKSLKDIPVVIMSSENVPSR 131
                  DDE H  L  +                   I+ESKS KDIPVVIMSSENVPSR
Sbjct: 67  SPISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSR 126

Query: 132 INRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           INRCLEEGAEEFFLKPVQLSDV KL+PH++K K+  N
Sbjct: 127 INRCLEEGAEEFFLKPVQLSDVNKLKPHMMKGKTREN 163

[Close]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match: I3SLM9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 1 

Query: 1   MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVED-- 60
           MG+A   +   T+FHVLAVDDS IDR LIERLLKTSS+HVTAVDS +KAL FLGLVED  
Sbjct: 1   MGMATPKE---TQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSASKALNFLGLVEDMA 60

Query: 61  PDLDDDVDDE-----------QHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEG 120
            ++  DVD                 L   I+ESKSLKDIPVVIMSSENVPSRINRCLEEG
Sbjct: 61  SEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEG 120

Query: 121 AEEFFLKPVQLSDVRKLRPHLIKEK 133
           AEEFFLKPVQLSDV KL+PHL+K +
Sbjct: 121 AEEFFLKPVQLSDVHKLKPHLMKSR 142

[Close]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match: A0A0D2UW97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214300 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 96/167 (57.49%), Postives = 111/167 (66.47%), Query Frame = 1 

Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           + +A+D + T+FHVLAVDDS IDRKLIERLLKTSS+ VTAVDSG+KALEFLGL  + D D
Sbjct: 1   MGMAIDRDDTQFHVLAVDDSLIDRKLIERLLKTSSFQVTAVDSGSKALEFLGL-NNNDAD 60

Query: 63  DDVDDEQHSK------------------------------------LPPSIQESKSLKDI 122
           DD +DEQ                                       L   I++S S KDI
Sbjct: 61  DDEEDEQRDSNTESVSSDEDQDHQDLGLGVNLIITDYCMPGMTGYDLLKKIKKSSSFKDI 120

Query: 123 PVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKS 134
           PVVIMSSEN+PSRINRCLE+GAEEFFLKPVQLSDV KLRPHL+K +S
Sbjct: 121 PVVIMSSENIPSRINRCLEDGAEEFFLKPVQLSDVNKLRPHLMKGRS 166

[Close]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 140.2 bits (352), Expect = 9.4e-34
Identity = 79/147 (53.74%), Postives = 98/147 (66.67%), Query Frame = 1 

Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS  DRKLIERLL+ SS  VT VDSG+KALEFLGL +  D +D       S
Sbjct: 7   SQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDP---NAFS 66

Query: 72  KLPPS--------------------------IQESKSLKDIPVVIMSSENVPSRINRCLE 131
           K P +                          ++ES + +DIPVVIMSSENVP+RI+RCLE
Sbjct: 67  KAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLE 126

Query: 132 EGAEEFFLKPVQLSDVRKLRPHLIKEK 133
           EGAEEFFLKPV+L+D+ KL+PH++K K
Sbjct: 127 EGAEEFFLKPVRLADLNKLKPHMMKTK 150

[Close]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-32
Identity = 76/142 (53.52%), Postives = 96/142 (67.61%), Query Frame = 1 

Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVED----------PDL 71
           ++FHVLAVDDS  DRK+IERLL+ SS  VT VDSG+KALEFLGL  D          P +
Sbjct: 7   SKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQI 66

Query: 72  DDDVDDE-----------QHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEGAEE 131
             +V+                 L   ++ES + + IPVVIMSSENVP+RI+RCLEEGAEE
Sbjct: 67  HQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEE 126

Query: 132 FFLKPVQLSDVRKLRPHLIKEK 133
           FFLKPV+L+D+ KL+PH++K K
Sbjct: 127 FFLKPVKLADLTKLKPHMMKTK 148

[Close]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 71/136 (52.21%), Postives = 96/136 (70.59%), Query Frame = 1 

Query: 9   VETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDP--------- 68
           +++ + HVLAVDDS +DR +IERLL+ +S  VTAVDSG +ALEFLGL +D          
Sbjct: 28  LDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLK 87

Query: 69  -DL---DDDVDDEQHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKP 128
            DL   D  +      +L   I+ES S K++PVVIMSSENV +RI+RCLEEGAE+F LKP
Sbjct: 88  VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKP 147

Query: 129 VQLSDVRKLRPHLIKE 132
           V+L+DV++LR +L ++
Sbjct: 148 VKLADVKRLRSYLTRD 163

[Close]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match: AT5G62920.1 (AT5G62920.1 response regulator 6)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-27
Identity = 68/129 (52.71%), Postives = 89/129 (68.99%), Query Frame = 1 

Query: 15  HVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGL-VEDPDL------------ 74
           HVLAVDDS +DRK IERLL+ SS  VT VDS T+AL++LGL VE+  +            
Sbjct: 26  HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNLIMT 85

Query: 75  DDDVDDEQHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDV 131
           D  +      +L   I+ES + +++PVVIMSSEN+  RI+RCLEEGAE+F LKPV+LSDV
Sbjct: 86  DYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDV 145

[Close]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match: AT1G10470.1 (AT1G10470.1 response regulator 4)

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-27
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 1 

Query: 1   MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDP- 60
           +G   +  ++    HVLAVDDS +DR +IERLL+ +S  VTAVDSG +ALEFLGL  +  
Sbjct: 21  IGGIESAPLDLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKA 80

Query: 61  ---------DL---DDDVDDEQHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEG 120
                    DL   D  +      +L   I+ES + +++PVVIMSSENV +RI+RCLEEG
Sbjct: 81  SAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEG 140

Query: 121 AEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           A++F LKPV+L+DV++LR HL K+    N
Sbjct: 141 AQDFLLKPVKLADVKRLRSHLTKDVKLSN 169

[Close]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match: gi|659072511|ref|XP_008465907.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 2.0e-46
Identity = 110/155 (70.97%), Postives = 117/155 (75.48%), Query Frame = 1 

Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPD--LD 64
           + V +E+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+D D   D
Sbjct: 1   MVVALESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQDHDQQTD 60

Query: 65  DDVDDEQHS---------------------KLPPSIQESKSLKDIPVVIMSSENVPSRIN 124
             +  E H                      +L   I+ESKSLKDIPVVIMSSENVPSRIN
Sbjct: 61  SKIAPENHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRIN 120

Query: 125 RCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           RCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 RCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 155

[Close]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match: gi|449445057|ref|XP_004140290.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 5.9e-46
Identity = 110/156 (70.51%), Postives = 116/156 (74.36%), Query Frame = 1 

Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 64
           + V VE+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+  D   D
Sbjct: 1   MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTD 60

Query: 65  ---VDDEQHS---------------------KLPPSIQESKSLKDIPVVIMSSENVPSRI 124
                D+ H                      +L   I+ESKSLKDIPVVIMSSENVPSRI
Sbjct: 61  SKIAPDQNHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRI 120

Query: 125 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 156

[Close]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match: gi|643733683|gb|KDP40526.1| (hypothetical protein JCGZ_24525 [Jatropha curcas])

HSP 1 Score: 168.7 bits (426), Expect = 7.0e-39
Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 1 

Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDD----- 72
           +FHVLAVDDS IDRKLIERLLKTSSYHVTAVDSG+KALEFLGL E+  +D ++       
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLTSVSPPG 67

Query: 73  EQHSKLPPS-------------------IQESKSLKDIPVVIMSSENVPSRINRCLEEGA 132
           + H  +  +                   I+ESKSLKDIPVVIMSSENVPSRINRCLEEGA
Sbjct: 68  DHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGA 127

Query: 133 EEFFLKPVQLSDVRKLRPHLIKEKS 134
           EEFFLKPVQLSDV KL+PHL+K K+
Sbjct: 128 EEFFLKPVQLSDVNKLKPHLMKGKA 152

[Close]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match: gi|255544001|ref|XP_002513063.1| (PREDICTED: two-component response regulator ARR9 [Ricinus communis])

HSP 1 Score: 168.7 bits (426), Expect = 7.0e-39
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 1 

Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD------- 71
           ++FHVLAVDDS IDRKLIERLLKTSS+HVTAVDSG+KALEFLGL E+ + +++       
Sbjct: 7   SQFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEEEEEEEEERRDS 66

Query: 72  ------VDDEQHSKLPPS-------------------IQESKSLKDIPVVIMSSENVPSR 131
                  DDE H  L  +                   I+ESKS KDIPVVIMSSENVPSR
Sbjct: 67  SPISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSR 126

Query: 132 INRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 137
           INRCLEEGAEEFFLKPVQLSDV KL+PH++K K+  N
Sbjct: 127 INRCLEEGAEEFFLKPVQLSDVNKLKPHMMKGKTREN 163

[Close]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match: gi|388506210|gb|AFK41171.1| (unknown [Lotus japonicus])

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-38
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 1 

Query: 1   MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVED-- 60
           MG+A   +   T+FHVLAVDDS IDR LIERLLKTSS+HVTAVDS +KAL FLGLVED  
Sbjct: 1   MGMATPKE---TQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSASKALNFLGLVEDMA 60

Query: 61  PDLDDDVDDE-----------QHSKLPPSIQESKSLKDIPVVIMSSENVPSRINRCLEEG 120
            ++  DVD                 L   I+ESKSLKDIPVVIMSSENVPSRINRCLEEG
Sbjct: 61  SEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEG 120

Query: 121 AEEFFLKPVQLSDVRKLRPHLIKEK 133
           AEEFFLKPVQLSDV KL+PHL+K +
Sbjct: 121 AEEFFLKPVQLSDVHKLKPHLMKSR 142

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ORR9_ORYSI1.8e-3456.08Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 ... [more]
ORR10_ORYSJ1.8e-3456.08Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 P... [more]
ORR10_ORYSI1.8e-3456.08Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=... [more]
ORR9_ORYSJ1.8e-3456.08Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=... [more]
ORR4_ORYSI1.2e-3356.29Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 ... [more]
BLAST of Cp4.1LG01g18980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQE6_CUCSA4.1e-4670.51Uncharacterized protein OS=Cucumis sativus GN=Csa_5G434550 PE=4 SV=1[more]
A0A067KWD7_JATCU4.9e-3964.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1[more]
B9RGB1_RICCO4.9e-3960.51Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452... [more]
I3SLM9_LOTJA1.9e-3866.90Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0D2UW97_GOSRA2.4e-3857.49Uncharacterized protein OS=Gossypium raimondii GN=B456_011G214300 PE=4 SV=1[more]
BLAST of Cp4.1LG01g18980 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57040.19.4e-3453.74 response regulator 9[more]
AT2G41310.14.0e-3253.52 response regulator 3[more]
AT1G59940.12.7e-2852.21 response regulator 3[more]
AT5G62920.12.3e-2752.71 response regulator 6[more]
AT1G10470.12.9e-2747.65 response regulator 4[more]
BLAST of Cp4.1LG01g18980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072511|ref|XP_008465907.1|2.0e-4670.97PREDICTED: two-component response regulator ARR9-like [Cucumis melo][more]
gi|449445057|ref|XP_004140290.1|5.9e-4670.51PREDICTED: two-component response regulator ARR9-like [Cucumis sativus][more]
gi|643733683|gb|KDP40526.1|7.0e-3964.83hypothetical protein JCGZ_24525 [Jatropha curcas][more]
gi|255544001|ref|XP_002513063.1|7.0e-3960.51PREDICTED: two-component response regulator ARR9 [Ricinus communis][more]
gi|388506210|gb|AFK41171.1|2.7e-3866.90unknown [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000160phosphorelay signal transduction system
Vocabulary: INTERPRO
TermDefinition
IPR011006CheY-like_superfamily
IPR001789Sig_transdc_resp-reg_receiver
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18980.1Cp4.1LG01g18980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001789Signal transduction response regulator, receiver domainPFAMPF00072Response_regcoord: 16..123
score: 3.7
IPR001789Signal transduction response regulator, receiver domainSMARTSM00448REC_2coord: 14..125
score: 0.
IPR001789Signal transduction response regulator, receiver domainPROFILEPS50110RESPONSE_REGULATORYcoord: 15..129
score: 20
IPR011006CheY-like superfamilyunknownSSF52172CheY-likecoord: 13..125
score: 3.98
NoneNo IPR availableGENE3DG3DSA:3.40.50.2300coord: 11..132
score: 2.6
NoneNo IPR availablePANTHERPTHR26402RESPONSE REGULATOR OF TWO-COMPONENT SYSTEMcoord: 14..136
score: 3.3
NoneNo IPR availablePANTHERPTHR26402:SF574SUBFAMILY NOT NAMEDcoord: 14..136
score: 3.3