CmoCh04G022980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G022980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Two-component response regulator
Location	Cmo_Chr04 : 17099257 .. 17100562 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCGATTAAACAATTGGTCAAGAGTCGCCCCCGTCTAAACCAAATCAACCTTGAAGATCCTCTCGATTCCGAATCAAATCTGTCGGATCTCGCTTTCCAACTGTCACATTCCAAGATTTTCCCTTCTACATCGAATCGATCTTCGCTCCTTCCATCCATAGATATAAAACTCCTTCGATTCATTCTCATTCTTATCAGTTCTCTTTCGATCTTCTTCTCCAATTCAAGTTCTCTGTCGCTGAAGAATCGCGATTCTACCAGCTATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGGTATTAATCGCTCCTTCCTTTTTCTGTTCACGATTGGAGGTTTTTTTTTTCCTTCTCCGATTCACGACTGATCGGTGTTTGTTTGTTCTGTTTTTCATTAGTTACTGCTGTTGATTCCGGTACCAAGGCGTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCTTCAATTCAAGTATGTAGCCCTAATTTTCTCTCTATCCTCGCGATTTTTATTCGTTTTTGTTTCTTCTGTCTCTAACTTGTTTGATCATTTCTGTTTTCAGGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGTTTGCCCTAATTTCTTTTCCTCCCTCCGATTCTACAGAGCAATCCAAAGAATCGAATCCACCGAGAATCAATAACTAATTCGTGCGATGAAATTGCAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGATGAGAAGAAGAAGATGAACAACTCCCTCAACTAATTTTAATTTTGATTTTAGTGATTCTGTAAAGAATTAGATCCCAATCTGACTACCATTAGCAAATTCTACACACAAATTTTCTCGGGAAACTAACAGAAAATCAAAGAATGTATAGATCTGCTGCTCATTTTTGTCTCTGATGATTTGATTTATGAAGTAATTTTTTGTTTCCTCTCTTTTCTCTTATTGAGAATCATCGTAAGAACAATCAAAATTGTTGATCCCCG

mRNA sequence

AAATCGATTAAACAATTGGTCAAGAGTCGCCCCCGTCTAAACCAAATCAACCTTGAAGATCCTCTCGATTCCGAATCAAATCTGTCGGATCTCGCTTTCCAACTGTCACATTCCAAGATTTTCCCTTCTACATCGAATCGATCTTCGCTCCTTCCATCCATAGATATAAAACTCCTTCGATTCATTCTCATTCTTATCAGTTCTCTTTCGATCTTCTTCTCCAATTCAAGTTCTCTGTCGCTGAAGAATCGCGATTCTACCAGCTATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCTTCAATTCAAGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGATGAGAAGAAGAAGATGAACAACTCCCTCAACTAATTTTAATTTTGATTTTAGTGATTCTGTAAAGAATTAGATCCCAATCTGACTACCATTAGCAAATTCTACACACAAATTTTCTCGGGAAACTAACAGAAAATCAAAGAATGTATAGATCTGCTGCTCATTTTTGTCTCTGATGATTTGATTTATGAAGTAATTTTTTGTTTCCTCTCTTTTCTCTTATTGAGAATCATCGTAAGAACAATCAAAATTGTTGATCCCCG

Coding sequence (CDS)

ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTTACTGCTGTTGATTCCGGTACCAAGGCGTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCTTCAATTCAAGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA

Homology

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BLAST of CmoCh04G022980 vs. Swiss-Prot
Match: ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 105/152 (69.08%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 7   VDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVD 66
           VD E+ RFHVLAVDDS IDRKLIE LLK SSY VT VDSG+KALE LGL ++     D  
Sbjct: 4   VDAES-RFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE----GDDS 63

Query: 67  DEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRI 126
               S   P  QE+DVNLIITDY MPGM+GYDLL+++K S SLKDIPVVIMSSENVP+RI
Sbjct: 64  SSSPSSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARI 123

Query: 127 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           NRCLE+GAEEFFLKPV+L+D++KL+ HL+K K
Sbjct: 124 NRCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150

[Close]

BLAST of CmoCh04G022980 vs. Swiss-Prot
Match: ORR4_ORYSJ (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 105/152 (69.08%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 7   VDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVD 66
           VD E+ RFHVLAVDDS IDRKLIE LLK SSY VT VDSG+KALE LGL ++     D  
Sbjct: 4   VDAES-RFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDE----GDDS 63

Query: 67  DEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRI 126
               S   P  QE+DVNLIITDY MPGM+GYDLL+++K S SLKDIPVVIMSSENVP+RI
Sbjct: 64  SSSPSSSSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARI 123

Query: 127 NRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           NRCLE+GAEEFFLKPV+L+D++KL+ HL+K K
Sbjct: 124 NRCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150

[Close]

BLAST of CmoCh04G022980 vs. Swiss-Prot
Match: ARR9_ARATH (Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-49
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS  DRKLIERLL+ SS  VT VDSG+KALEFLGL +  D +D       S
Sbjct: 7   SQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDP---NAFS 66

Query: 72  KLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLE 131
           K P + Q V+VNLIITDY MPGM+GYDLL+K+KES + +DIPVVIMSSENVP+RI+RCLE
Sbjct: 67  KAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLE 126

Query: 132 EGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           EGAEEFFLKPV+L+D+ KL+PH++K K
Sbjct: 127 EGAEEFFLKPVRLADLNKLKPHMMKTK 150

[Close]

BLAST of CmoCh04G022980 vs. Swiss-Prot
Match: ORR10_ORYSI (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-49
Identity = 104/156 (66.67%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENV 122
                +Q        QEV VNLIITDY MPGM+GYDLL+KIKES  L+DIPVVIMSS+N+
Sbjct: 61  ISTQSDQ--------QEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNI 120

Query: 123 PSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 PSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]

BLAST of CmoCh04G022980 vs. Swiss-Prot
Match: ORR10_ORYSJ (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 PE=2 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-49
Identity = 104/156 (66.67%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 3   VAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLD 62
           +AVA++     FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL +  D  
Sbjct: 1   MAVAIEAP---FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSP 60

Query: 63  DDVDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENV 122
                +Q        QEV VNLIITDY MPGM+GYDLL+KIKES  L+DIPVVIMSS+N+
Sbjct: 61  ISTQSDQ--------QEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNI 120

Query: 123 PSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 PSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

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BLAST of CmoCh04G022980 vs. TrEMBL
Match: A0A0A0KQE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G434550 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.8e-63
Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 1


Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 64
           + V VE+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+  D   D
Sbjct: 1   MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTD 60

Query: 65  ---VDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSEN 124
                D+ H       QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIMSSEN
Sbjct: 61  SKIAPDQNHHH-----QEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSEN 120

Query: 125 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 163
           VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 156

[Close]

BLAST of CmoCh04G022980 vs. TrEMBL
Match: A0A067KWD7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-55
Identity = 118/149 (79.19%), Postives = 130/149 (87.25%), Query Frame = 1


Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSK 72
           +FHVLAVDDS IDRKLIERLLKTSSYHVTAVDSG+KALEFLGL E+  +D ++     S 
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLT----SV 67

Query: 73  LPPSI--QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 132
            PP    Q+V+VNLIITDY MPGM+GYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL
Sbjct: 68  SPPGDHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 127

Query: 133 EEGAEEFFLKPVQLSDVRKLRPHLIKEKS 160
           EEGAEEFFLKPVQLSDV KL+PHL+K K+
Sbjct: 128 EEGAEEFFLKPVQLSDVNKLKPHLMKGKA 152

[Close]

BLAST of CmoCh04G022980 vs. TrEMBL
Match: B9RGB1_RICCO (Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452640 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-54
Identity = 114/158 (72.15%), Postives = 134/158 (84.81%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS IDRKLIERLLKTSS+HVTAVDSG+KALEFLGL E+ + +++ ++E+  
Sbjct: 7   SQFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEE-EEEEEEERRD 66

Query: 72  KLPPSI-------QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPS 131
             P S+       Q++ VNLIITDY MPGM+GYDLLRKIKESKS KDIPVVIMSSENVPS
Sbjct: 67  SSPISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPS 126

Query: 132 RINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 163
           RINRCLEEGAEEFFLKPVQLSDV KL+PH++K K+  N
Sbjct: 127 RINRCLEEGAEEFFLKPVQLSDVNKLKPHMMKGKTREN 163

[Close]

BLAST of CmoCh04G022980 vs. TrEMBL
Match: F6I5R9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03430 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-54
Identity = 115/150 (76.67%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSK 72
           +FHVLAVDDS IDRKLIE+LLKTSSY VTAVDSG+KALEFLGL E          EQ + 
Sbjct: 8   QFHVLAVDDSIIDRKLIEKLLKTSSYQVTAVDSGSKALEFLGLQEA---------EQRNL 67

Query: 73  LPPSI---QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRC 132
            PPS+   QE++VNLIITDY MPGM+GYDLLRKIKES SLKDIPVVIMSSEN+PSRINRC
Sbjct: 68  SPPSLCPSQEMEVNLIITDYCMPGMTGYDLLRKIKESTSLKDIPVVIMSSENIPSRINRC 127

Query: 133 LEEGAEEFFLKPVQLSDVRKLRPHLIKEKS 160
           LEEGAE+FFLKPVQLSDV KLRPHL+K K+
Sbjct: 128 LEEGAEDFFLKPVQLSDVNKLRPHLLKGKA 148

[Close]

BLAST of CmoCh04G022980 vs. TrEMBL
Match: A0A059T9P7_ROSCN (Two-component response regulator OS=Rosa canina GN=RR1 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-54
Identity = 113/148 (76.35%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS IDRKLIERLLKTSSY VT VDSG+KALEFLGL ED    D  + +  S
Sbjct: 7   SQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLYED----DQTNPDSPS 66

Query: 72  KLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLE 131
             P + QEV+VNLIITDY MPGM+GYDLLRKIKES SLK+IPVVIMSSENVPSRINRCLE
Sbjct: 67  VSPNNQQEVEVNLIITDYCMPGMTGYDLLRKIKESSSLKNIPVVIMSSENVPSRINRCLE 126

Query: 132 EGAEEFFLKPVQLSDVRKLRPHLIKEKS 160
           +GAEEFFLKPV+LSD+ +LRPH+IK KS
Sbjct: 127 QGAEEFFLKPVRLSDLNRLRPHIIKTKS 150

[Close]

BLAST of CmoCh04G022980 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-50
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS  DRKLIERLL+ SS  VT VDSG+KALEFLGL +  D +D       S
Sbjct: 7   SQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDP---NAFS 66

Query: 72  KLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLE 131
           K P + Q V+VNLIITDY MPGM+GYDLL+K+KES + +DIPVVIMSSENVP+RI+RCLE
Sbjct: 67  KAPVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLE 126

Query: 132 EGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           EGAEEFFLKPV+L+D+ KL+PH++K K
Sbjct: 127 EGAEEFFLKPVRLADLNKLKPHMMKTK 150

[Close]

BLAST of CmoCh04G022980 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-49
Identity = 98/147 (66.67%), Postives = 118/147 (80.27%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS  DRK+IERLL+ SS  VT VDSG+KALEFLGL  D     D D    S
Sbjct: 7   SKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVD-----DNDPNALS 66

Query: 72  KLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLE 131
             P   QEV++NLIITDY MPGM+GYDLL+K+KES + + IPVVIMSSENVP+RI+RCLE
Sbjct: 67  TSPQIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLE 126

Query: 132 EGAEEFFLKPVQLSDVRKLRPHLIKEK 159
           EGAEEFFLKPV+L+D+ KL+PH++K K
Sbjct: 127 EGAEEFFLKPVKLADLTKLKPHMMKTK 148

[Close]

BLAST of CmoCh04G022980 vs. TAIR10
Match: AT3G48100.1 (AT3G48100.1 response regulator 5)

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-41
Identity = 86/150 (57.33%), Postives = 115/150 (76.67%), Query Frame = 1


Query: 15  HVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLP 74
           HVLAVDDS +DRK IERLL+ SS  VT VDS T+AL++LGL          D E +S + 
Sbjct: 26  HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGL----------DGENNSSV- 85

Query: 75  PSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGA 134
              +++ +NLI+TDYSMPGM+GY+LL+KIKES + ++IPVVIMSSEN+  RI+RCLEEGA
Sbjct: 86  -GFEDLKINLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGA 145

Query: 135 EEFFLKPVQLSDVRKLRPHLIK--EKSTRN 163
           E+F LKPV+L+DV++LR  L+K  E++ +N
Sbjct: 146 EDFLLKPVKLADVKRLRDSLMKAEERAFKN 163

[Close]

BLAST of CmoCh04G022980 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 164.1 bits (414), Expect = 7.3e-41
Identity = 87/149 (58.39%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 9   VETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDE 68
           +++ + HVLAVDDS +DR +IERLL+ +S  VTAVDSG +ALEFLGL      DDD    
Sbjct: 28  LDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL------DDD---- 87

Query: 69  QHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINR 128
              K       + V+LIITDY MPGM+GY+LL+KIKES S K++PVVIMSSENV +RI+R
Sbjct: 88  ---KAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDR 147

Query: 129 CLEEGAEEFFLKPVQLSDVRKLRPHLIKE 158
           CLEEGAE+F LKPV+L+DV++LR +L ++
Sbjct: 148 CLEEGAEDFLLKPVKLADVKRLRSYLTRD 163

[Close]

BLAST of CmoCh04G022980 vs. TAIR10
Match: AT5G62920.1 (AT5G62920.1 response regulator 6)

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-40
Identity = 84/142 (59.15%), Postives = 110/142 (77.46%), Query Frame = 1


Query: 15  HVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLP 74
           HVLAVDDS +DRK IERLL+ SS  VT VDS T+AL++LGL        DV+++      
Sbjct: 26  HVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGL--------DVEEKS----- 85

Query: 75  PSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGA 134
              +++ VNLI+TDYSMPGM+GY+LL+KIKES + +++PVVIMSSEN+  RI+RCLEEGA
Sbjct: 86  VGFEDLKVNLIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGA 145

Query: 135 EEFFLKPVQLSDVRKLRPHLIK 157
           E+F LKPV+LSDV++LR  L+K
Sbjct: 146 EDFLLKPVKLSDVKRLRDSLMK 154

[Close]

BLAST of CmoCh04G022980 vs. NCBI nr
Match: gi|659072511|ref|XP_008465907.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.7e-63
Identity = 135/161 (83.85%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 64
           + V +E+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+D D   D
Sbjct: 1   MVVALESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQDHDQQTD 60

Query: 65  VDDEQHSKLPPSI---QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSEN 124
                 SK+ P     QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIMSSEN
Sbjct: 61  ------SKIAPENHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSEN 120

Query: 125 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 163
           VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 155

[Close]

BLAST of CmoCh04G022980 vs. NCBI nr
Match: gi|449445057|ref|XP_004140290.1| (PREDICTED: two-component response regulator ARR9-like [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 8.3e-63
Identity = 134/161 (83.23%), Postives = 139/161 (86.34%), Query Frame = 1


Query: 5   VAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 64
           + V VE+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+  D   D
Sbjct: 1   MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQHHDQQTD 60

Query: 65  ---VDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSEN 124
                D+ H       QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIMSSEN
Sbjct: 61  SKIAPDQNHHH-----QEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSEN 120

Query: 125 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 163
           VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 VPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 156

[Close]

BLAST of CmoCh04G022980 vs. NCBI nr
Match: gi|643733683|gb|KDP40526.1| (hypothetical protein JCGZ_24525 [Jatropha curcas])

HSP 1 Score: 223.4 bits (568), Expect = 2.9e-55
Identity = 118/149 (79.19%), Postives = 130/149 (87.25%), Query Frame = 1


Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSK 72
           +FHVLAVDDS IDRKLIERLLKTSSYHVTAVDSG+KALEFLGL E+  +D ++     S 
Sbjct: 8   QFHVLAVDDSLIDRKLIERLLKTSSYHVTAVDSGSKALEFLGLNEEEQIDSNLT----SV 67

Query: 73  LPPSI--QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 132
            PP    Q+V+VNLIITDY MPGM+GYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL
Sbjct: 68  SPPGDHHQDVEVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCL 127

Query: 133 EEGAEEFFLKPVQLSDVRKLRPHLIKEKS 160
           EEGAEEFFLKPVQLSDV KL+PHL+K K+
Sbjct: 128 EEGAEEFFLKPVQLSDVNKLKPHLMKGKA 152

[Close]

BLAST of CmoCh04G022980 vs. NCBI nr
Match: gi|255544001|ref|XP_002513063.1| (PREDICTED: two-component response regulator ARR9 [Ricinus communis])

HSP 1 Score: 220.3 bits (560), Expect = 2.4e-54
Identity = 114/158 (72.15%), Postives = 134/158 (84.81%), Query Frame = 1


Query: 12  TRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHS 71
           ++FHVLAVDDS IDRKLIERLLKTSS+HVTAVDSG+KALEFLGL E+ + +++ ++E+  
Sbjct: 7   SQFHVLAVDDSLIDRKLIERLLKTSSFHVTAVDSGSKALEFLGLNEEEE-EEEEEEERRD 66

Query: 72  KLPPSI-------QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPS 131
             P S+       Q++ VNLIITDY MPGM+GYDLLRKIKESKS KDIPVVIMSSENVPS
Sbjct: 67  SSPISVCPDDEHHQDLQVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPS 126

Query: 132 RINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 163
           RINRCLEEGAEEFFLKPVQLSDV KL+PH++K K+  N
Sbjct: 127 RINRCLEEGAEEFFLKPVQLSDVNKLKPHMMKGKTREN 163

[Close]

BLAST of CmoCh04G022980 vs. NCBI nr
Match: gi|225465885|ref|XP_002267404.1| (PREDICTED: two-component response regulator ARR8 [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 115/150 (76.67%), Postives = 127/150 (84.67%), Query Frame = 1


Query: 13  RFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSK 72
           +FHVLAVDDS IDRKLIE+LLKTSSY VTAVDSG+KALEFLGL E          EQ + 
Sbjct: 8   QFHVLAVDDSIIDRKLIEKLLKTSSYQVTAVDSGSKALEFLGLQEA---------EQRNL 67

Query: 73  LPPSI---QEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRC 132
            PPS+   QE++VNLIITDY MPGM+GYDLLRKIKES SLKDIPVVIMSSEN+PSRINRC
Sbjct: 68  SPPSLCPSQEMEVNLIITDYCMPGMTGYDLLRKIKESTSLKDIPVVIMSSENIPSRINRC 127

Query: 133 LEEGAEEFFLKPVQLSDVRKLRPHLIKEKS 160
           LEEGAE+FFLKPVQLSDV KLRPHL+K K+
Sbjct: 128 LEEGAEDFFLKPVQLSDVNKLRPHLLKGKA 148

The following BLAST results are available for this feature:

BLAST of CmoCh04G022980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ORR4_ORYSI	9.5e-51	69.08	Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 ...	[more]
ORR4_ORYSJ	9.5e-51	69.08	Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=...	[more]
ARR9_ARATH	1.8e-49	68.03	Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1	[more]
ORR10_ORYSI	3.1e-49	66.67	Two-component response regulator ORR10 OS=Oryza sativa subsp. indica GN=RR10 PE=...	[more]
ORR10_ORYSJ	3.1e-49	66.67	Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 P...	[more]

BLAST of CmoCh04G022980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQE6_CUCSA	5.8e-63	83.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G434550 PE=4 SV=1	[more]
A0A067KWD7_JATCU	2.0e-55	79.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1	[more]
B9RGB1_RICCO	1.7e-54	72.15	Two-component response regulator ARR8, putative OS=Ricinus communis GN=RCOM_1452...	[more]
F6I5R9_VITVI	8.4e-54	76.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03430 PE=4 SV=...	[more]
A0A059T9P7_ROSCN	8.4e-54	76.35	Two-component response regulator OS=Rosa canina GN=RR1 PE=2 SV=1	[more]

BLAST of CmoCh04G022980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57040.1	1.0e-50	68.03	response regulator 9	[more]
AT2G41310.1	4.3e-49	66.67	response regulator 3	[more]
AT3G48100.1	4.3e-41	57.33	response regulator 5	[more]
AT1G59940.1	7.3e-41	58.39	response regulator 3	[more]
AT5G62920.1	1.6e-40	59.15	response regulator 6	[more]

BLAST of CmoCh04G022980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072511\|ref\|XP_008465907.1\|	1.7e-63	83.85	PREDICTED: two-component response regulator ARR9-like [Cucumis melo]	[more]
gi\|449445057\|ref\|XP_004140290.1\|	8.3e-63	83.23	PREDICTED: two-component response regulator ARR9-like [Cucumis sativus]	[more]
gi\|643733683\|gb\|KDP40526.1\|	2.9e-55	79.19	hypothetical protein JCGZ_24525 [Jatropha curcas]	[more]
gi\|255544001\|ref\|XP_002513063.1\|	2.4e-54	72.15	PREDICTED: two-component response regulator ARR9 [Ricinus communis]	[more]
gi\|225465885\|ref\|XP_002267404.1\|	1.2e-53	76.67	PREDICTED: two-component response regulator ARR8 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR011006	CheY-like_superfamily

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G022980.1	CmoCh04G022980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 77..149 score: 4.4
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 14..151 score: 9.9
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 15..155 score: 34
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 13..151 score: 1.66
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 11..156 score: 7.3
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 14..53 score: 6.8E-94coord: 78..162 score: 6.8
None	No IPR available	PANTHER	PTHR26402:SF574	SUBFAMILY NOT NAMED	coord: 14..53 score: 6.8E-94coord: 78..162 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G022980	CmaCh15G008340	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G022980	CmaCh04G021970	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G022980	Cla005891	Watermelon (97103) v1	cmowmB706
CmoCh04G022980	Csa5G434550	Cucumber (Chinese Long) v2	cmocuB720
CmoCh04G022980	MELO3C005156	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G022980	ClCG01G007500	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G022980	CSPI05G15450	Wild cucumber (PI 183967)	cmocpiB728
CmoCh04G022980	Lsi09G007950	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G022980	Cp4.1LG13g06060	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G022980	Cp4.1LG01g18980	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G022980	MELO3C005156.2	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G022980	CsaV3_5G024480	Cucumber (Chinese Long) v3	cmocucB0852
CmoCh04G022980	Cla97C01G007850	Watermelon (97103) v2	cmowmbB676
CmoCh04G022980	Bhi12G000986	Wax gourd	cmowgoB0828
CmoCh04G022980	CsGy5G015260	Cucumber (Gy14) v2	cgybcmoB631
CmoCh04G022980	Carg01371	Silver-seed gourd	carcmoB1121
CmoCh04G022980	Carg17731	Silver-seed gourd	carcmoB0648

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G022980	CmoCh15G008650	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G022980	Wax gourd	cmowgoB0823