Cp4.1LG01g18410 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18410
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNADH dehydrogenase-like complex L
LocationCp4.1LG01 : 15673876 .. 15675304 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAATGTAATGATTTACCCTGGTGTCCTTGTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGAAGTGAACAGAGTTCAGTTTTGAATATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATGTCCTCTCCCTTTCTCTCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTCTCTCTCTTAACATATATTTTCTTTCTGGGTTTAGTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTAAGCAAGTTTCAAATGTTACCCTTTTGCTTTTTCTCATTCTGAATTTTGAAATTGGATTAAAAATGAAATCGGAACAGGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCAGTATGAATTTCCCCAAATCATTTGGTTTCTTTTTTCTCCTCAGTTTCTTATGAAATTTGGTTGCATAAGATTTGGTTTTCTGGGTGAAATTTGCAGCCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGGTACGTCCATTTATAACTACACCCCTTTCTTTTTTATTCCCATATCTTTCTTCTCTAAGTTGTGAGTGAACAAACTGTGCAGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTCATGGGTCACTTAAGAGTGCACATTTGGTTCATTTTCTTGGCTTAGGATTAAACTGATATAAGGGAAGAATCCATAGCAAGATGTTCTGTACCATCTTATAATTGCCAGGTATAATGACACTGTGAGACACAGATGCCATTAGATGACTGAGCTAATTTGAGTCCAAGAAAATATTTCAGGGATCCAGAA

mRNA sequence

TGAAATGTAATGATTTACCCTGGTGTCCTTGTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGAAGTGAACAGAGTTCAGTTTTGAATATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTCATGGGTCACTTAAGAGTGCACATTTGGTTCATTTTCTTGGCTTAGGATTAAACTGATATAAGGGAAGAATCCATAGCAAGATGTTCTGTACCATCTTATAATTGCCAGGTATAATGACACTGTGAGACACAGATGCCATTAGATGACTGAGCTAATTTGAGTCCAAGAAAATATTTCAGGGATCCAGAA

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW
Homology
[Close]
BLAST of Cp4.1LG01g18410 vs. Swiss-Prot
Match: NDHL_ARATH (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana GN=ndhL PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.2e-49
Identity = 102/189 (53.97%), Postives = 126/189 (66.67%), Query Frame = 1 

Query: 4   SLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKKT 63
           SLGL+ P ALPSLS        + +PF +    +KP       V  +R      L  KKT
Sbjct: 6   SLGLYAPNALPSLSLKPRS---VKSPFCITS-HTKPNDTLLHNVNKMRAKACDILGAKKT 65

Query: 64  SLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRW 123
            L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+RW
Sbjct: 66  ILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVRW 125

Query: 124 YRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKY 183
           YRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKY
Sbjct: 126 YRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLKY 185

Query: 184 PFAKPEDYD 193
           P+A PEDYD
Sbjct: 186 PYATPEDYD 189

[Close]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match: A0A0A0KSV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.3e-82
Identity = 154/196 (78.57%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 3   CSLGL-HIPKALPSLSSSKTISPFLSAPFKLLK---LPSKPTSINFQVVASIRE-DPIAF 62
           CS+GL HIPKALPSLSSSKT+ P L +PFKL     LPS     NF++V SI+E DPI +
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMN 122
           L +KKTSL+L  AA LATV EPA+AVTG+NNHEVPLTW+L QLG++GFFYFLVFPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTPQ+PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NGYLKYPFAKPEDYDW 194
           N YLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match: W9S5X4_9ROSA (NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.3e-58
Identity = 120/191 (62.83%), Postives = 143/191 (74.87%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           M+CS+  HIPKALPSL   +  +P LS   K     S    +N + +ASI + P+ +   
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNP-LSVTSK--HSHSCTAKLNQETMASIIQKPVEYFHM 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KK+SL++Q  A+LA V +PA AVTG NN E  LTW L QLG+V FFYFLV PPIIMNWLR
Sbjct: 61  KKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWY+RNLLE Y QFM VF+ F G+LLWAPFLNFRKFPRDPSMKYPWS P++PS+IKN Y
Sbjct: 121 IRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKNAY 180

Query: 181 LKYPFAKPEDY 192
           LKYPFA+PEDY
Sbjct: 181 LKYPFAEPEDY 187

[Close]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match: A0A061E9I1_THECC (Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma cacao GN=TCM_010968 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-56
Identity = 125/200 (62.50%), Postives = 141/200 (70.50%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSK---TISPFLSA-----PFKLLKLPSKPTSINFQVVASIRE 60
           M+      IPKA PS+S S    T  PF +      P    KL  K  S     VASI  
Sbjct: 1   MSSPFTFQIPKAWPSISHSPSHCTTFPFYNITSTHKPIHHSKLDDKKRS-----VASINI 60

Query: 61  DPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFP 120
            P  F   KKTSL++Q AALLAT  +PA AVTG NN E  L  ++ QLGIV F+YFL+ P
Sbjct: 61  KPNDFFDTKKTSLAIQVAALLATFEQPALAVTGVNN-EPDLISVIIQLGIVAFWYFLIMP 120

Query: 121 PIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQE 180
           PIIMNWLRIRWYRRNLLEMY+QFMCVFL FPG+LLWAPFLNFRKFPRDPS+KYPW TP++
Sbjct: 121 PIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGVLLWAPFLNFRKFPRDPSLKYPWDTPKD 180

Query: 181 PSQIKNGYLKYPFAKPEDYD 193
           PSQ+K  YLKYPFAKPEDYD
Sbjct: 181 PSQVKYAYLKYPFAKPEDYD 194

[Close]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match: B9SP72_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-56
Identity = 118/196 (60.20%), Postives = 141/196 (71.94%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSKTISPF-LSAPFKLL---KLPSKPTSINFQVVASIREDPIA 60
           M+CSL  HIP+ALPSLS  +  +PF +S+ +K +   KL  K        V+SIR  P  
Sbjct: 1   MSCSLSFHIPQALPSLSPHRRKAPFYISSKYKPVHNSKLDKK--------VSSIRRSPEG 60

Query: 61  FLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIM 120
           +   KK SL++Q  A  ATV + A AVTG NN E  LTW+L Q  IV F+YFL+ PPIIM
Sbjct: 61  YNDVKKFSLAVQLGAFFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIM 120

Query: 121 NWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQI 180
           NW+R+RWYRR L EMY+QFM  F+ FPGILLWAPFLNFRKFPRDPSMKYPWSTP+ PSQI
Sbjct: 121 NWMRVRWYRRKLFEMYLQFMFTFIFFPGILLWAPFLNFRKFPRDPSMKYPWSTPENPSQI 180

Query: 181 KNGYLKYPFAKPEDYD 193
           KN Y K+P+A PEDYD
Sbjct: 181 KNDYAKFPYATPEDYD 187

[Close]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match: D7T8Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-56
Identity = 117/192 (60.94%), Postives = 142/192 (73.96%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLS-APFKLLKLPSKPTSINFQVVASIREDPIAFLR 60
           M+CS  + IPKALP L  S+   P LS +  +     +KP     + + SI +  + ++ 
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSISSIQKQSHHAKP----IKTITSIIKKSVDYIS 60

Query: 61  QKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWL 120
             K SL++Q  ALLATV +PA AVTG N  EV L W+L QLGIV F+YFL+ PPIIMNWL
Sbjct: 61  TNKHSLAIQVGALLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNWL 120

Query: 121 RIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNG 180
           RIRWY RNLLEMY+QFM VF+ FPG++LWAPFLNFRKFPRDPSMKYPWSTPQ P+Q+KN 
Sbjct: 121 RIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKNA 180

Query: 181 YLKYPFAKPEDY 192
           +LKYPFAKPEDY
Sbjct: 181 FLKYPFAKPEDY 187

[Close]
BLAST of Cp4.1LG01g18410 vs. TAIR10
Match: AT1G70760.1 (AT1G70760.1 inorganic carbon transport protein-related)

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-50
Identity = 102/189 (53.97%), Postives = 126/189 (66.67%), Query Frame = 1 

Query: 4   SLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKKT 63
           SLGL+ P ALPSLS        + +PF +    +KP       V  +R      L  KKT
Sbjct: 6   SLGLYAPNALPSLSLKPRS---VKSPFCITS-HTKPNDTLLHNVNKMRAKACDILGAKKT 65

Query: 64  SLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRW 123
            L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+RW
Sbjct: 66  ILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVRW 125

Query: 124 YRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKY 183
           YRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKY
Sbjct: 126 YRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLKY 185

Query: 184 PFAKPEDYD 193
           P+A PEDYD
Sbjct: 186 PYATPEDYD 189

[Close]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: gi|449464794|ref|XP_004150114.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 1.9e-82
Identity = 154/196 (78.57%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 3   CSLGL-HIPKALPSLSSSKTISPFLSAPFKLLK---LPSKPTSINFQVVASIRE-DPIAF 62
           CS+GL HIPKALPSLSSSKT+ P L +PFKL     LPS     NF++V SI+E DPI +
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMN 122
           L +KKTSL+L  AA LATV EPA+AVTG+NNHEVPLTW+L QLG++GFFYFLVFPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIK 182
           WLRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPSMKYPWSTPQ+PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NGYLKYPFAKPEDYDW 194
           N YLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: gi|659074603|ref|XP_008437693.1| (PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 6.8e-72
Identity = 130/153 (84.97%), Postives = 141/153 (92.16%), Query Frame = 1 

Query: 42  INFQVVASIRE-DPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQL 101
           + F++V SI+E DPI +L +KKTSL+LQ AA LATV EPA+AVTGDNNHEVPLTW+L QL
Sbjct: 1   MKFEIVGSIKEEDPIGYLDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQL 60

Query: 102 GIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRD 161
           G VGFFYFLVFPPIIMNWLRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRD
Sbjct: 61  GFVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRD 120

Query: 162 PSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 194
           PSMKYPWSTPQ+PSQIKN YLKYPFAKPEDYDW
Sbjct: 121 PSMKYPWSTPQDPSQIKNAYLKYPFAKPEDYDW 153

[Close]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: gi|703119800|ref|XP_010101957.1| (NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis])

HSP 1 Score: 233.4 bits (594), Expect = 3.3e-58
Identity = 120/191 (62.83%), Postives = 143/191 (74.87%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           M+CS+  HIPKALPSL   +  +P LS   K     S    +N + +ASI + P+ +   
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNP-LSVTSK--HSHSCTAKLNQETMASIIQKPVEYFHM 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KK+SL++Q  A+LA V +PA AVTG NN E  LTW L QLG+V FFYFLV PPIIMNWLR
Sbjct: 61  KKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWY+RNLLE Y QFM VF+ F G+LLWAPFLNFRKFPRDPSMKYPWS P++PS+IKN Y
Sbjct: 121 IRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKNAY 180

Query: 181 LKYPFAKPEDY 192
           LKYPFA+PEDY
Sbjct: 181 LKYPFAEPEDY 187

[Close]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: gi|645229355|ref|XP_008221428.1| (PREDICTED: uncharacterized protein LOC103321412 isoform X2 [Prunus mume])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 113/191 (59.16%), Postives = 144/191 (75.39%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           M+CS    IP+ALPSLS  +  S  +++  +    P KP      V+ SI ++P  +   
Sbjct: 1   MSCSFTFQIPQALPSLSHPRRTSVTITSQHRQSYDP-KPEET---VITSIFQNPADYFHL 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KK+SL++Q  A+LAT+ +PA AVTG N  E  L W+L Q G++ F+YFL+ PPIIMNWLR
Sbjct: 61  KKSSLAIQVGAVLATIEQPAFAVTGVNFEE-DLIWVLIQSGVIAFWYFLLMPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWY+RNLLEMY+QFMC+FL FPG+LLWAPFLNFRKFPRDPSMKYPWSTP++P Q+K G+
Sbjct: 121 IRWYKRNLLEMYLQFMCIFLFFPGVLLWAPFLNFRKFPRDPSMKYPWSTPEDPDQVKAGF 180

Query: 181 LKYPFAKPEDY 192
           LKYPFA+PEDY
Sbjct: 181 LKYPFAEPEDY 186

[Close]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: gi|1009154931|ref|XP_015895439.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 115/192 (59.90%), Postives = 145/192 (75.52%), Query Frame = 1 

Query: 1   MNCSLGLHIPKALPSLSSS-KTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLR 60
           M+CS+   IPKALPSLS   +  S F+++  +   +    T+ + + +  + ++P+ +  
Sbjct: 1   MSCSISFQIPKALPSLSRPIQRASLFITSKHRDCNI----TNHSKKKLEHVIQNPLEYFH 60

Query: 61  QKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWL 120
            KK SL++    +LATV +PA AVTG N +E  LTW+L QLGIV FFYFLV PPI+MNWL
Sbjct: 61  VKKASLAIHVGTVLATVEQPAFAVTGVN-YEADLTWVLIQLGIVAFFYFLVVPPIVMNWL 120

Query: 121 RIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNG 180
           RIRWY+RNLLEMY QFM VFL FPG+LLWAPFLNFRKFPRDPSMKYPWS P++PSQIKN 
Sbjct: 121 RIRWYKRNLLEMYFQFMFVFLFFPGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSQIKNA 180

Query: 181 YLKYPFAKPEDY 192
           +LK+PFAKPEDY
Sbjct: 181 FLKFPFAKPEDY 187

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDHL_ARATH6.2e-4953.97NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ... [more]
BLAST of Cp4.1LG01g18410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSV9_CUCSA1.3e-8278.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1[more]
W9S5X4_9ROSA2.3e-5862.83NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 ... [more]
A0A061E9I1_THECC1.6e-5662.50Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma caca... [more]
B9SP72_RICCO3.7e-5660.20Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1[more]
D7T8Q0_VITVI3.7e-5660.94Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=... [more]
BLAST of Cp4.1LG01g18410 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G70760.13.5e-5053.97 inorganic carbon transport protein-related[more]
BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464794|ref|XP_004150114.1|1.9e-8278.57PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sati... [more]
gi|659074603|ref|XP_008437693.1|6.8e-7284.97PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo][more]
gi|703119800|ref|XP_010101957.1|3.3e-5862.83NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis][more]
gi|645229355|ref|XP_008221428.1|1.1e-5659.16PREDICTED: uncharacterized protein LOC103321412 isoform X2 [Prunus mume][more]
gi|1009154931|ref|XP_015895439.1|1.1e-5659.90PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus juj... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016655oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
Vocabulary: INTERPRO
TermDefinition
IPR019654NADH-quinone_OxRdatse_su_L
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18410.1Cp4.1LG01g18410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019654NAD(P)H-quinone oxidoreductase subunit LPFAMPF10716NdhLcoord: 89..160
score: 8.6
NoneNo IPR availablePANTHERPTHR36727FAMILY NOT NAMEDcoord: 1..193
score: 4.0
NoneNo IPR availablePANTHERPTHR36727:SF2SUBFAMILY NOT NAMEDcoord: 1..193
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g18410Cucsa.280300Cucumber (Gy14) v1cgycpeB0737
Cp4.1LG01g18410CmaCh04G021200Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g18410CmoCh04G022190Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g18410Cla003933Watermelon (97103) v1cpewmB442
Cp4.1LG01g18410Csa5G569340Cucumber (Chinese Long) v2cpecuB424
Cp4.1LG01g18410MELO3C005297Melon (DHL92) v3.5.1cpemeB347
Cp4.1LG01g18410ClCG01G006330Watermelon (Charleston Gray)cpewcgB373
Cp4.1LG01g18410CSPI05G19500Wild cucumber (PI 183967)cpecpiB422
Cp4.1LG01g18410Lsi09G006670Bottle gourd (USVL1VR-Ls)cpelsiB315
Cp4.1LG01g18410MELO3C005297.2Melon (DHL92) v3.6.1cpemedB407
Cp4.1LG01g18410CsaV3_5G028340Cucumber (Chinese Long) v3cpecucB0526
Cp4.1LG01g18410Bhi12G000791Wax gourdcpewgoB0494
Cp4.1LG01g18410CsGy5G019010Cucumber (Gy14) v2cgybcpeB634
Cp4.1LG01g18410Carg26068Silver-seed gourdcarcpeB0600
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g18410Cucurbita pepo (Zucchini)cpecpeB200
Cp4.1LG01g18410Cucumber (Gy14) v1cgycpeB0523
Cp4.1LG01g18410Cucurbita maxima (Rimu)cmacpeB319
Cp4.1LG01g18410Cucurbita moschata (Rifu)cmocpeB281
Cp4.1LG01g18410Wild cucumber (PI 183967)cpecpiB444
Cp4.1LG01g18410Wild cucumber (PI 183967)cpecpiB454
Cp4.1LG01g18410Cucumber (Chinese Long) v2cpecuB443
Cp4.1LG01g18410Cucumber (Chinese Long) v2cpecuB455
Cp4.1LG01g18410Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g18410Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g18410Watermelon (97103) v1cpewmB440
Cp4.1LG01g18410Melon (DHL92) v3.5.1cpemeB353
Cp4.1LG01g18410Cucumber (Gy14) v2cgybcpeB651
Cp4.1LG01g18410Melon (DHL92) v3.6.1cpemedB412
Cp4.1LG01g18410Silver-seed gourdcarcpeB0275
Cp4.1LG01g18410Cucumber (Chinese Long) v3cpecucB0547
Cp4.1LG01g18410Wax gourdcpewgoB0491