Cla003933 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003933
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	NAD(P)H-quinone oxidoreductase subunit L (AHRD V1 -- NDHL_THEEB); contains Interpro domain(s) IPR019654 NADH dehydrogenase, transmembrane subunit NdhL
Location	Chr1 : 6529056 .. 6531477 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATGTCTCTCTCTCTCTCTCTCATTCTCTGCTTTTCTCTCTCTACTTTCTCTCTCTAAACATTCTTTTTCCTCTGTTTTTGGGTGTAGTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTAAGCAAGTTTCCTCCTTTTTATTTTCATCCATTGTTTTCTCATTCTAAACTACTTCTAATTAATAAAACCTTGCTTTAATATTATTCATTAGTTATGTTTTATAATTCCAGTTATAATGCATTTTCCCCTATAAACTTTGTTTTTCAAGTTTTAGTTTTAGGTAACAATTTAGTTTGTTTTAGTTTTTAATTTGAAAATTTTCTTTCAAATTAGGTGTTACAAATTTCAGTAATATATTTTTCTTAATAACAACGATTAAATTGTTATTTATTTAAGTTTAAACTAATTAAATTGTTACAAATTTGAAAGTATTTTATCGTTAGAATTTTATATATTTCTTCCCTTTTTGATTTGTTGAATTTTGAAAATGGTAACAATCAAAACCTTTAAGTTAATGATTGTATTTATTTAATCTAAAATCAAGTTGGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAATCGCTTGTGTAAATTTGTCGTTCACCCTCTGATATGGGTTCTAATTTTTGTTTCTCAAATTTTTTCTAATCATGCGAAAGGTAGGGCGCGTAGGATGTATATTGAAAGGCTGATTATTCTAGTTGGGCGTCCTCTAAACTTGTTAGTTGTTTTTTTAATGAAGTTATTTTAAATAAAATATTGGAAATTCACTGGTTCAAACATTTGTAACATTCTTATAATTTGTGAAGAATTGTACGTTAAAATTGAAGAGGTTAAAGTGAAAATTTGGTTAGTTAACTATTGGATTTGAAATAACAGGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTGTAAGAATATAGTTAAATTTTGCCAGATTCTTTCTCTAAAGTTACGAAGGAACGAATTAAGTTGATTTCAAAAGGGAGTATTTTATTTTATGGCAGCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGTAAGGACTTGGATTTTGATACTGTTAAAATCATTTTTGTCATGTTCTAAATCACTCTTAAACATGTGGTTAAAGTCTACAATCAAAACATTATATATATTGTTAATACCTAGATTTGGTATCAATGGTGAATTTGAAATATTAGGGAGAGAATGGAATGGGTGTCTTGCAATACAAAAAGATCTAACACTTGTGTGGTGTTTAGCCACTAACACTTCGATGATAATTAAGTCAGTGACATTATTTCTAGATAGCTAAGAGAGTAGAGAGAGTTCGAAGTATATTTTAAATTTTTTTAGTATACTTTGAAATGTATAACATGCTCTCTTACCATTATTGAGAAATATTGTTTCATAATAGTTGTTAATCACTAATTAGCTTCTCAGACTATTAATTAAACTGCTACTAACCATTATATGACAAGTTAGTCTAGATAATCTTATTTGAAAATCTAAGTACACACAACTGACTCAAGGAATAAACACTTATACTTAATTAATTTTCTCTTTCATGACCAACTCTATTGGTCAGCCTCCACAAGGGCTCACAGGAAGAAGTTTCAGGGGTTGGCCATCTCCTCTTTCACAATTGACCAATAGACGTGTGGGCCATCGTGGCCCGACCTTATGGGTTGGGCCACACTATCTCTAGGGTCGATCTTCCCTTATGGTCGACCTTATACATTGGCCGATTTGTCCATCAAAGTTGGCCTCTCTTAGTTATAACTCTTCCCTTCTGATGGTCACTGTTAGAGTGACCTACTTAGCTTGATTTTTAACTTGTATATTGATTTTGAATGATTAAAAATATGTTTACAAGTGATTTGTTTCGGACATACTGTGAATCATACATAAATGTTAAAAGTTGTTAGTTGAATTTTGCAGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

mRNA sequence

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

Homology

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BLAST of Cla003933 vs. Swiss-Prot
Match: NDHL_ARATH (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana GN=ndhL PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-53
Identity = 105/191 (54.97%), Postives = 129/191 (67.54%), Query Frame = 1


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 183
           RWYRR   EMYLQFM VF+FFPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

Query: 184 KYPFAKPEDYD 195
           KYP+A PEDYD
Sbjct: 186 KYPYATPEDYD 189

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BLAST of Cla003933 vs. Swiss-Prot
Match: NDHL_SYNPX (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) GN=ndhL PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-07
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 1


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++    ++G  Y L+ P  +  W+  RW R   +E  L +  VFLFFPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

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BLAST of Cla003933 vs. Swiss-Prot
Match: NDHL_TRIEI (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) GN=ndhL PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 109 YFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 158
           YFL+ P I+  +L+ RWY  + +E    +  +FLFFPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

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BLAST of Cla003933 vs. Swiss-Prot
Match: NDHL_THEEB (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhL PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 26/64 (40.62%), Postives = 33/64 (51.56%), Query Frame = 1


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           +L   G +   Y L+ P I+  +L  RWY  +  E    +  V  FFPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 158 KFPR 162
             PR
Sbjct: 69  PQPR 72

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BLAST of Cla003933 vs. Swiss-Prot
Match: NDHL_ACAM1 (NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11017) GN=ndhL PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-07
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 98  ILTQLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFR 157
           ++  LG++G  Y L+ P I   +L+ RWY  + LE    +  VF FFP +LL +PFLNFR
Sbjct: 5   LILLLGLLGG-YLLVMPAITYFYLQKRWYVASSLERGFMYFLVFFFFPSLLLLSPFLNFR 64

Query: 158 KFPR 162
             PR
Sbjct: 65  PQPR 67

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BLAST of Cla003933 vs. TrEMBL
Match: A0A0A0KSV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 9.6e-97
Identity = 171/196 (87.24%), Postives = 184/196 (93.88%), Query Frame = 1


Query: 3   CSLGL-HIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIRE-DPIAY 62
           CS+GL HIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+E DPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

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BLAST of Cla003933 vs. TrEMBL
Match: W9S5X4_9ROSA (NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-63
Identity = 122/193 (63.21%), Postives = 143/193 (74.09%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+  HIPKALPSL   +   P   +S   H+     N      E + SI + P+ Y 
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNPLSVTSKHSHSCTAKLNQ-----ETMASIIQKPVEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K+SLA+Q+ A+LA V +PA AVTG NN E  LTW L QLG+V FFYFL+ PPIIMNW
Sbjct: 61  HMKKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWY+RNLLE Y QFM VF+FF G+LLWAPFLNFRKFPRDPSMKYPWS PE+PS+IKN
Sbjct: 121 LRIRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKN 180

Query: 181 AYLKYPFAKPEDY 194
           AYLKYPFA+PEDY
Sbjct: 181 AYLKYPFAEPEDY 187

[Close]

BLAST of Cla003933 vs. TrEMBL
Match: D7T8Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 124/193 (64.25%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS  + IPKALP L  S+  FPSLS S    ++   S+ +    + + SI +  + Y+
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSIS----SIQKQSH-HAKPIKTITSIIKKSVDYI 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
             +K SLA+Q+ ALLATV +PA AVTG N  EV L W+L QLGIV F+YFLI PPIIMNW
Sbjct: 61  STNKHSLAIQVGALLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWY RNLLEMYLQFM VF+FFPG++LWAPFLNFRKFPRDPSMKYPWSTP+ P+Q+KN
Sbjct: 121 LRIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKN 180

Query: 181 AYLKYPFAKPEDY 194
           A+LKYPFAKPEDY
Sbjct: 181 AFLKYPFAKPEDY 187

[Close]

BLAST of Cla003933 vs. TrEMBL
Match: B9SP72_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 124/196 (63.27%), Postives = 139/196 (70.92%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPS-LSSSFK-LHNLNLPSNSNPNNFEIVGSIREDPIA 60
           M+CSL  HIP+ALPSLS  +   P  +SS +K +HN  L           V SIR  P  
Sbjct: 1   MSCSLSFHIPQALPSLSPHRRKAPFYISSKYKPVHNSKLDKK--------VSSIRRSPEG 60

Query: 61  YLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIM 120
           Y    K SLA+QL A  ATV + A AVTG NN E  LTW+L Q  IV F+YFLI PPIIM
Sbjct: 61  YNDVKKFSLAVQLGAFFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIM 120

Query: 121 NWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQI 180
           NW+R+RWYRR L EMYLQFM  F+FFPGILLWAPFLNFRKFPRDPSMKYPWSTPE PSQI
Sbjct: 121 NWMRVRWYRRKLFEMYLQFMFTFIFFPGILLWAPFLNFRKFPRDPSMKYPWSTPENPSQI 180

Query: 181 KNAYLKYPFAKPEDYD 195
           KN Y K+P+A PEDYD
Sbjct: 181 KNDYAKFPYATPEDYD 187

[Close]

BLAST of Cla003933 vs. TrEMBL
Match: A0A061E9I1_THECC (Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma cacao GN=TCM_010968 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.5e-60
Identity = 126/200 (63.00%), Postives = 146/200 (73.00%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSK---TLFP--SLSSSFK-LHNLNLPSNSNPNNFEIVGSIRE 60
           M+      IPKA PS+S S    T FP  +++S+ K +H+  L           V SI  
Sbjct: 1   MSSPFTFQIPKAWPSISHSPSHCTTFPFYNITSTHKPIHHSKLDDKKRS-----VASINI 60

Query: 61  DPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFP 120
            P  +    KTSLA+Q+AALLAT  +PA AVTG NN E  L  ++ QLGIV F+YFLI P
Sbjct: 61  KPNDFFDTKKTSLAIQVAALLATFEQPALAVTGVNN-EPDLISVIIQLGIVAFWYFLIMP 120

Query: 121 PIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEE 180
           PIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPG+LLWAPFLNFRKFPRDPS+KYPW TP++
Sbjct: 121 PIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGVLLWAPFLNFRKFPRDPSLKYPWDTPKD 180

Query: 181 PSQIKNAYLKYPFAKPEDYD 195
           PSQ+K AYLKYPFAKPEDYD
Sbjct: 181 PSQVKYAYLKYPFAKPEDYD 194

[Close]

BLAST of Cla003933 vs. NCBI nr
Match: gi|449464794|ref|XP_004150114.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 171/196 (87.24%), Postives = 184/196 (93.88%), Query Frame = 1


Query: 3   CSLGL-HIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIRE-DPIAY 62
           CS+GL HIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+E DPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 182
           WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

Query: 183 NAYLKYPFAKPEDYDW 196
           NAYLKYPFAKPEDYDW
Sbjct: 186 NAYLKYPFAKPEDYDW 201

[Close]

BLAST of Cla003933 vs. NCBI nr
Match: gi|659074603|ref|XP_008437693.1| (PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 9.3e-77
Identity = 136/151 (90.07%), Postives = 144/151 (95.36%), Query Frame = 1


Query: 46  FEIVGSIRE-DPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGI 105
           FEIVGSI+E DPI YL + KTSLALQLAA LATVGEPA+AVTGDNNHEVPLTW+L QLG 
Sbjct: 3   FEIVGSIKEEDPIGYLDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGF 62

Query: 106 VGFFYFLIFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPS 165
           VGFFYFL+FPPIIMNWLRIRWYRRNLLEMY+QFMCVFLFFPGILLWAPFLNFRKFPRDPS
Sbjct: 63  VGFFYFLVFPPIIMNWLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPS 122

Query: 166 MKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW 196
           MKYPWSTP++PSQIKNAYLKYPFAKPEDYDW
Sbjct: 123 MKYPWSTPQDPSQIKNAYLKYPFAKPEDYDW 153

[Close]

BLAST of Cla003933 vs. NCBI nr
Match: gi|703119800|ref|XP_010101957.1| (NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis])

HSP 1 Score: 249.6 bits (636), Expect = 4.5e-63
Identity = 122/193 (63.21%), Postives = 143/193 (74.09%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+  HIPKALPSL   +   P   +S   H+     N      E + SI + P+ Y 
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNPLSVTSKHSHSCTAKLNQ-----ETMASIIQKPVEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K+SLA+Q+ A+LA V +PA AVTG NN E  LTW L QLG+V FFYFL+ PPIIMNW
Sbjct: 61  HMKKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWY+RNLLE Y QFM VF+FF G+LLWAPFLNFRKFPRDPSMKYPWS PE+PS+IKN
Sbjct: 121 LRIRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKN 180

Query: 181 AYLKYPFAKPEDY 194
           AYLKYPFA+PEDY
Sbjct: 181 AYLKYPFAEPEDY 187

[Close]

BLAST of Cla003933 vs. NCBI nr
Match: gi|225424301|ref|XP_002284666.1| (PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 2.2e-62
Identity = 124/193 (64.25%), Postives = 149/193 (77.20%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS  + IPKALP L  S+  FPSLS S    ++   S+ +    + + SI +  + Y+
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSIS----SIQKQSH-HAKPIKTITSIIKKSVDYI 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
             +K SLA+Q+ ALLATV +PA AVTG N  EV L W+L QLGIV F+YFLI PPIIMNW
Sbjct: 61  STNKHSLAIQVGALLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWY RNLLEMYLQFM VF+FFPG++LWAPFLNFRKFPRDPSMKYPWSTP+ P+Q+KN
Sbjct: 121 LRIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKN 180

Query: 181 AYLKYPFAKPEDY 194
           A+LKYPFAKPEDY
Sbjct: 181 AFLKYPFAKPEDY 187

[Close]

BLAST of Cla003933 vs. NCBI nr
Match: gi|1009154931|ref|XP_015895439.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-62
Identity = 121/193 (62.69%), Postives = 146/193 (75.65%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+   IPKALPSLS       SL  + K  + N+ ++S      ++    ++P+ Y 
Sbjct: 1   MSCSISFQIPKALPSLSRPIQR-ASLFITSKHRDCNITNHSKKKLEHVI----QNPLEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K SLA+ +  +LATV +PA AVTG N +E  LTW+L QLGIV FFYFL+ PPI+MNW
Sbjct: 61  HVKKASLAIHVGTVLATVEQPAFAVTGVN-YEADLTWVLIQLGIVAFFYFLVVPPIVMNW 120

Query: 121 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 180
           LRIRWY+RNLLEMY QFM VFLFFPG+LLWAPFLNFRKFPRDPSMKYPWS PE+PSQIKN
Sbjct: 121 LRIRWYKRNLLEMYFQFMFVFLFFPGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSQIKN 180

Query: 181 AYLKYPFAKPEDY 194
           A+LK+PFAKPEDY
Sbjct: 181 AFLKFPFAKPEDY 187

The following BLAST results are available for this feature:

BLAST of Cla003933 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHL_ARATH	7.2e-53	54.97	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
NDHL_SYNPX	2.0e-07	40.00	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) GN...	[more]
NDHL_TRIEI	3.5e-07	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
NDHL_THEEB	4.6e-07	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]
NDHL_ACAM1	6.0e-07	43.75	NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11...	[more]

BLAST of Cla003933 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV9_CUCSA	9.6e-97	87.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1	[more]
W9S5X4_9ROSA	3.1e-63	63.21	NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 ...	[more]
D7T8Q0_VITVI	1.6e-62	64.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=...	[more]
B9SP72_RICCO	1.9e-60	63.27	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1	[more]
A0A061E9I1_THECC	5.5e-60	63.00	Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma caca...	[more]

BLAST of Cla003933 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464794\|ref\|XP_004150114.1\|	1.4e-96	87.24	PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sati...	[more]
gi\|659074603\|ref\|XP_008437693.1\|	9.3e-77	90.07	PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo]	[more]
gi\|703119800\|ref\|XP_010101957.1\|	4.5e-63	63.21	NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis]	[more]
gi\|225424301\|ref\|XP_002284666.1\|	2.2e-62	64.25	PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera]	[more]
gi\|1009154931\|ref\|XP_015895439.1\|	2.9e-62	62.69	PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019654	NADH-quinone_OxRdatse_su_L

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003933	Cla003933.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 91..162 score: 5.7
None	No IPR available	PANTHER	PTHR36727	FAMILY NOT NAMED	coord: 1..195 score: 1.4
None	No IPR available	PANTHER	PTHR36727:SF2	SUBFAMILY NOT NAMED	coord: 1..195 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003933	Cla97C01G006630	Watermelon (97103) v2	wmwmbB236
Cla003933	Csa5G569340	Cucumber (Chinese Long) v2	cuwmB416
Cla003933	MELO3C005297	Melon (DHL92) v3.5.1	mewmB030
Cla003933	ClCG01G006330	Watermelon (Charleston Gray)	wcgwmB143
Cla003933	CSPI05G19500	Wild cucumber (PI 183967)	cpiwmB425
Cla003933	Cucsa.280300	Cucumber (Gy14) v1	cgywmB512
Cla003933	CmaCh04G021200	Cucurbita maxima (Rimu)	cmawmB714
Cla003933	CmoCh04G022190	Cucurbita moschata (Rifu)	cmowmB710
Cla003933	Lsi09G006670	Bottle gourd (USVL1VR-Ls)	lsiwmB028
Cla003933	Cp4.1LG01g18410	Cucurbita pepo (Zucchini)	cpewmB442
Cla003933	CsGy5G019010	Cucumber (Gy14) v2	cgybwmB389
Cla003933	MELO3C005297.2	Melon (DHL92) v3.6.1	medwmB029
Cla003933	Carg26068	Silver-seed gourd	carwmB0424
Cla003933	CsaV3_5G028340	Cucumber (Chinese Long) v3	cucwmB441
Cla003933	Bhi12G000791	Wax gourd	wgowmB075

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003933	Cucumber (Chinese Long) v3	cucwmB438
Cla003933	Watermelon (97103) v2	wmwmbB278
Cla003933	Cucurbita maxima (Rimu)	cmawmB273
Cla003933	Cucurbita maxima (Rimu)	cmawmB710
Cla003933	Cucurbita maxima (Rimu)	cmawmB713
Cla003933	Cucurbita moschata (Rifu)	cmowmB263
Cla003933	Cucurbita moschata (Rifu)	cmowmB706
Cla003933	Cucurbita moschata (Rifu)	cmowmB708
Cla003933	Cucurbita pepo (Zucchini)	cpewmB188
Cla003933	Cucurbita pepo (Zucchini)	cpewmB440
Cla003933	Cucumber (Gy14) v2	cgybwmB386
Cla003933	Silver-seed gourd	carwmB0169
Cla003933	Silver-seed gourd	carwmB0181
Cla003933	Silver-seed gourd	carwmB0423
Cla003933	Silver-seed gourd	carwmB0883