Carg26068 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26068
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAD(P)H-quinone oxidoreductase subunit L
Location	Cucurbita_argyrosperma_scaffold_258 : 258174 .. 259514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTACTACGAATATCCAATGGGCCTCATTTATCGGCCCATCTTAAGCCCAAATTTAATAAGAGTTGGCCTCAAAAAGTAGTTTACTCTAATTTACCTGGATATTAAAAAATGCAAAGATATTTATTTGAACATAGTCAGAAAATTGAACAAATATATTTATTGGTATGGTAATAAAAATAAAAAAAAAATGTGATGGTTGGCACGTGGCATGGCAACTATAAGTAGTAGTTTGCAGATATGTCCTTTGAAATGTAATGATTTACCCTGGTGTCCTTGTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTTCTGGAAGTGAACAGAGTTCAGTTTTGAATATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCCTCCAACCCAACCTCCATTAATGTCCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTCTCTCTCTTAACATATATTTTCTTTCTGGGTTTAGTTTCAGGTGGTGGCTTGCATCAGAGAAGACCCCATTGGCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTAAGCAAGTTTCAAATGTTACCCTTTTGCTTTTTCTCATTCTGAATTTTAAAATTGGATTAAAAATGAAATCGGAGCAGGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAATCATGAGGTTCCACTGACATGGATTTTGGCACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCAGTATGAATTTCCCCAAAACATTTGGTTTCTTTTTTCTCCTCAGTTTCTTGTTAAATTAAGTTGCATAAGATTTGGTTTTCTGGGTGAAATTTGCAGCCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGTGTCTTCCTTTGCTTCCCTGGGTACGTCCATTTATAATTAACTACATCCTTTTTATTTTCTTCCATATAATCGTATCTTTCTTCTAAGTTGTGAGTGAACAAATTGTGCAGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

mRNA sequence

ATGATGTTTCAGGTGGTGGCTTGCATCAGAGAAGACCCCATTGGCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAATCATGAGGTTCCACTGACATGGATTTTGGCACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGTGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

Coding sequence (CDS)

ATGATGTTTCAGGTGGTGGCTTGCATCAGAGAAGACCCCATTGGCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAATCATGAGGTTCCACTGACATGGATTTTGGCACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGTGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

Protein sequence

MMFQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW

Homology

[Close]

BLAST of Carg26068 vs. NCBI nr
Match: XP_022953622.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 316.6 bits (810), Expect = 4.5e-83
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 3   FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIV 62
           FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIV
Sbjct: 44  FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIV 103

Query: 63  GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 122
           GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM
Sbjct: 104 GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 163

Query: 123 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW
Sbjct: 164 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 193

[Close]

BLAST of Carg26068 vs. NCBI nr
Match: XP_022953639.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 [Cucurbita moschata])

HSP 1 Score: 316.6 bits (810), Expect = 4.5e-83
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 3   FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIV 62
           FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIV
Sbjct: 34  FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIV 93

Query: 63  GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 122
           GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM
Sbjct: 94  GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 153

Query: 123 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW
Sbjct: 154 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 183

[Close]

BLAST of Carg26068 vs. NCBI nr
Match: XP_022953630.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 5   VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGF 64
           VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIVGF
Sbjct: 44  VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGF 103

Query: 65  FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY 124
           FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY
Sbjct: 104 FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY 163

Query: 125 PWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           PWSTPQEPSQIKNGYLKYPFAKPEDYDW
Sbjct: 164 PWSTPQEPSQIKNGYLKYPFAKPEDYDW 191

[Close]

BLAST of Carg26068 vs. NCBI nr
Match: XP_022953647.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 5   VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGF 64
           VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIVGF
Sbjct: 34  VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGF 93

Query: 65  FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY 124
           FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY
Sbjct: 94  FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY 153

Query: 125 PWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           PWSTPQEPSQIKNGYLKYPFAKPEDYDW
Sbjct: 154 PWSTPQEPSQIKNGYLKYPFAKPEDYDW 181

[Close]

BLAST of Carg26068 vs. NCBI nr
Match: XP_023527074.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.5 bits (794), Expect = 3.3e-81
Identity = 147/150 (98.00%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 3   FQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIV 62
           FQVVA IREDPI FLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIV
Sbjct: 44  FQVVASIREDPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIV 103

Query: 63  GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 122
           GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM
Sbjct: 104 GFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSM 163

Query: 123 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW
Sbjct: 164 KYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 193

[Close]

BLAST of Carg26068 vs. TAIR10
Match: AT1G70760.1 (inorganic carbon transport protein-related)

HSP 1 Score: 183.7 bits (465), Expect = 8.3e-47
Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 9   IREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGFFYFL 68
           +R      L  KKT L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL
Sbjct: 48  MRAKACDILGAKKTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFL 107

Query: 69  VFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWST 128
           V PPIIMNWLR+RWYRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  
Sbjct: 108 VMPPIIMNWLRVRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDK 167

Query: 129 PQEPSQIKNGYLKYPFAKPEDYD 152
           P +P  IKN YLKYP+A PEDYD
Sbjct: 168 PTDPDSIKNVYLKYPYATPEDYD 189

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BLAST of Carg26068 vs. Swiss-Prot
Match: sp|Q9CAC5|NDHL_ARATH (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhL PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-45
Identity = 86/143 (60.14%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 9   IREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGFFYFL 68
           +R      L  KKT L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL
Sbjct: 48  MRAKACDILGAKKTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFL 107

Query: 69  VFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWST 128
           V PPIIMNWLR+RWYRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  
Sbjct: 108 VMPPIIMNWLRVRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDK 167

Query: 129 PQEPSQIKNGYLKYPFAKPEDYD 152
           P +P  IKN YLKYP+A PEDYD
Sbjct: 168 PTDPDSIKNVYLKYPYATPEDYD 189

[Close]

BLAST of Carg26068 vs. Swiss-Prot
Match: sp|Q7V897|NDHL_PROMM (NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=ndhL PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 55  ILAQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 114
           +LA   ++G  Y +V P ++ +W+  RW+     E    +  VFL FPG++L+APFLN R
Sbjct: 17  VLAAYALLGGLYLIVVPLLLYSWMNRRWHCMGKFERLSAYGLVFLFFPGLILFAPFLNLR 76

[Close]

BLAST of Carg26068 vs. Swiss-Prot
Match: sp|Q8DKZ3|NDHL_THEEB (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=ndhL PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 55  ILAQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 114
           +L   G +   Y LV P I+  +L  RWY  +  E    +  V   FPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 115 KFPR 119
             PR
Sbjct: 69  PQPR 72

[Close]

BLAST of Carg26068 vs. Swiss-Prot
Match: sp|Q10W93|NDHL_TRIEI (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 66  YFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 115
           YFLV P I+  +L+ RWY  + +E    +  +FL FPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

[Close]

BLAST of Carg26068 vs. Swiss-Prot
Match: sp|Q7U620|NDHL_SYNPX (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX=84588 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 55  ILAQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 114
           ++    ++G  Y LV P  +  W+  RW R   +E  + +  VFL FPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

[Close]

BLAST of Carg26068 vs. TrEMBL
Match: tr|A0A1S3AUR2|A0A1S3AUR2_CUCME (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483037 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.7e-73
Identity = 132/153 (86.27%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MMFQVVACIR-EDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQL 60
           M F++V  I+ EDPIG+L +KKTSL+LQ AA LATV EPA+AVTGDNNHEVPLTW+LAQL
Sbjct: 1   MKFEIVGSIKEEDPIGYLDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQL 60

Query: 61  GIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRD 120
           G VGFFYFLVFPPIIMNWLRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRD
Sbjct: 61  GFVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRD 120

Query: 121 PSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           PSMKYPWSTPQ+PSQIKN YLKYPFAKPEDYDW
Sbjct: 121 PSMKYPWSTPQDPSQIKNAYLKYPFAKPEDYDW 153

[Close]

BLAST of Carg26068 vs. TrEMBL
Match: tr|A0A0A0KSV9|A0A0A0KSV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.0e-71
Identity = 127/151 (84.11%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 3   FQVVACIR-EDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGI 62
           F++V  I+ EDPIG+L +KKTSL+L  AA LATV EPA+AVTG+NNHEVPLTW+LAQLG+
Sbjct: 51  FKIVGSIKEEDPIGYLHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGV 110

Query: 63  VGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPS 122
           +GFFYFLVFPPIIMNWLRIRWYRRNLLEMY+QFMCVFL FPGILLWAPFLNFRKFPRDPS
Sbjct: 111 IGFFYFLVFPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPS 170

Query: 123 MKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW 153
           MKYPWSTPQ+PS+IKN YLKYPFAKPEDYDW
Sbjct: 171 MKYPWSTPQDPSKIKNAYLKYPFAKPEDYDW 201

[Close]

BLAST of Carg26068 vs. TrEMBL
Match: tr|A0A061E9I1|A0A061E9I1_THECC (Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_010968 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.7e-54
Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 6   VACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGFF 65
           VA I   P  F   KKTSL++Q AALLAT  +PA AVTG NN E  L  ++ QLGIV F+
Sbjct: 50  VASINIKPNDFFDTKKTSLAIQVAALLATFEQPALAVTGVNN-EPDLISVIIQLGIVAFW 109

Query: 66  YFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYP 125
           YFL+ PPIIMNWLRIRWYRRNLLEMY+QFMCVFL FPG+LLWAPFLNFRKFPRDPS+KYP
Sbjct: 110 YFLIMPPIIMNWLRIRWYRRNLLEMYLQFMCVFLFFPGVLLWAPFLNFRKFPRDPSLKYP 169

Query: 126 WSTPQEPSQIKNGYLKYPFAKPEDYD 152
           W TP++PSQ+K  YLKYPFAKPEDYD
Sbjct: 170 WDTPKDPSQVKYAYLKYPFAKPEDYD 194

[Close]

BLAST of Carg26068 vs. TrEMBL
Match: tr|A0A2N9EU71|A0A2N9EU71_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6001 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.2e-54
Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 0


Query: 1   MMFQVVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLG 60
           + +Q +ACI + P+     KK++L++Q  ALLAT  +PA AVTG  N+E  LT +L QLG
Sbjct: 17  VQYQTLACITKKPLHEFCLKKSTLAIQIGALLATAEQPALAVTG-VNYEPDLTSVLIQLG 76

Query: 61  IVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDP 120
           IV FFYFL+ PPIIMNWLRIRWYRRNLLEMY QFM VFL FPGILLWAPFLNFRKFPRDP
Sbjct: 77  IVAFFYFLIAPPIIMNWLRIRWYRRNLLEMYFQFMFVFLFFPGILLWAPFLNFRKFPRDP 136

Query: 121 SMKYPWSTPQEPSQIKNGYLKYPFAKPEDY 151
           +MKYPWSTPQ+PS+IKN YLKYPFA+PEDY
Sbjct: 137 TMKYPWSTPQDPSKIKNDYLKYPFAEPEDY 165

[Close]

BLAST of Carg26068 vs. TrEMBL
Match: tr|A0A251R6S9|A0A251R6S9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G330000 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 99/146 (67.81%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 5   VVACIREDPIGFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGF 64
           V+  I ++P  +   KK+SL++Q  A+LAT+ +PA AVTG  N E  LTW+L Q G++ F
Sbjct: 42  VITSIFQNPADYFHLKKSSLAIQVGAVLATIEQPAFAVTG-VNFEEDLTWVLIQSGVIAF 101

Query: 65  FYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKY 124
           +YFL+ PPIIMNWLRIRWY+RNLLEMY+QFMCVFL FPG+LLWAPFLNFRKFPRDPSMKY
Sbjct: 102 WYFLLMPPIIMNWLRIRWYKRNLLEMYLQFMCVFLFFPGVLLWAPFLNFRKFPRDPSMKY 161

Query: 125 PWSTPQEPSQIKNGYLKYPFAKPEDY 151
           PWSTP++P Q+K G+LKYPFA+PEDY
Sbjct: 162 PWSTPEDPDQVKAGFLKYPFAEPEDY 186

The following BLAST results are available for this feature:

BLAST of Carg26068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953622.1	4.5e-83	99.33	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita mo...	[more]
XP_022953639.1	4.5e-83	99.33	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 [Cucurbita mo...	[more]
XP_022953630.1	1.1e-81	99.32	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita mo...	[more]
XP_022953647.1	1.1e-81	99.32	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 [Cucurbita mo...	[more]
XP_023527074.1	3.3e-81	98.00	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pe...	[more]

BLAST of Carg26068 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70760.1	8.3e-47	60.14	inorganic carbon transport protein-related	[more]

BLAST of Carg26068 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CAC5\|NDHL_ARATH	1.5e-45	60.14	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q7V897\|NDHL_PROMM	3.4e-05	38.33	NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT ...	[more]
sp\|Q8DKZ3\|NDHL_THEEB	3.4e-05	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]
sp\|Q10W93\|NDHL_TRIEI	3.4e-05	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
sp\|Q7U620\|NDHL_SYNPX	4.4e-05	38.33	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX...	[more]

BLAST of Carg26068 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AUR2\|A0A1S3AUR2_CUCME	3.7e-73	86.27	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0KSV9\|A0A0A0KSV9_CUCSA	2.0e-71	84.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569340 PE=4 SV=1	[more]
tr\|A0A061E9I1\|A0A061E9I1_THECC	1.7e-54	73.29	Inorganic carbon transport protein-related, putative isoform 1 OS=Theobroma caca...	[more]
tr\|A0A2N9EU71\|A0A2N9EU71_FAGSY	2.2e-54	71.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6001 PE=4 SV=1	[more]
tr\|A0A251R6S9\|A0A251R6S9_PRUPE	1.1e-53	67.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G330000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **INTERPRO**
Term	Definition
IPR019654	NADH-quinone_OxRdatse_su_L

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26068-RA	Carg26068-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 48..119 e-value: 4.9E-29 score: 100.0
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PANTHER	PTHR36727	FAMILY NOT NAMED	coord: 18..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26068	Cla003933	Watermelon (97103) v1	carwmB0424
Carg26068	Csa5G569340	Cucumber (Chinese Long) v2	carcuB0459
Carg26068	MELO3C005297	Melon (DHL92) v3.5.1	carmeB0435
Carg26068	ClCG01G006330	Watermelon (Charleston Gray)	carwcgB0420
Carg26068	CSPI05G19500	Wild cucumber (PI 183967)	carcpiB0464
Carg26068	Cucsa.280300	Cucumber (Gy14) v1	carcgyB0494
Carg26068	CmaCh04G021200	Cucurbita maxima (Rimu)	carcmaB0595
Carg26068	CmoCh04G022190	Cucurbita moschata (Rifu)	carcmoB0580
Carg26068	Lsi09G006670	Bottle gourd (USVL1VR-Ls)	carlsiB388
Carg26068	Cp4.1LG01g18410	Cucurbita pepo (Zucchini)	carcpeB0600
Carg26068	CsGy5G019010	Cucumber (Gy14) v2	carcgybB0435
Carg26068	MELO3C005297.2	Melon (DHL92) v3.6.1	carmedB0437
Carg26068	CsaV3_5G028340	Cucumber (Chinese Long) v3	carcucB0460
Carg26068	Cla97C01G006630	Watermelon (97103) v2	carwmbB0451
Carg26068	Bhi12G000791	Wax gourd	carwgoB0513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None