ClCG01G006330 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G006330
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Inorganic carbon transport family protein
Location	CG_Chr01 : 7064835 .. 7067391 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAACAGAGTTTTTGAATATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATGTCTCTCTCTCTCTCTCTCATTCTCTGCTTTTCTCTCTCTACTTTCTCTCTCTAAACATTCTTTTTCCTCTGTTTTTGGGTGTAGTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTAAGCAAGTTTCCTCCTTTTTATTTTCATCCATTGTTTTCTCATTCTAAACTACTTCTAATTAATAAAACCTTGCTTTAATATTATTCATTAGTTATGTTTTATAATTCCAGTTATAATGCATTTTCCCCTATAAACTTTGTTTTTCAAGTTTTAGTTTTAGGTAACAATTTAGTTTGTTTTAGTTTTTAATTTGAAAATTTTCTTTCAAATTAGGTGTTACAAATTTCAGTAATATATTTTTCTTAATAACAACGATTAAATTGTTATTTATTTAAGTTTAAACTAATTAAATTGTTACAAATTTGAAAGTATTTTATCGTTAGAATTTTATATATTTCTTCCCTTTTTGATTTGTTGAATTTTGAAAATGGTAACAATCAAAACCTTTAAGTTAATGATTGTATTTATTTAATCATTTTAACTAAGTCAAGTTGGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAAGACCAAGAATGTTGGTCATGTTTCTTTTAGAATTTGCAATCGCTTGTGTAAATTTGTCGTTCACCCTCTGATATGGGTTCTAATTTTTGTTTCTCAAATTTTTTCTAATCATGCGAAAGGTAGGGCGCGTAGGATGTATATTGAAAGGCTGATTATTCTAGTTGGGCGTCCTCTAAACTTGTTAGTTGTTTTTTTAATGAAGTTATTTTAAATAAAATATTGGAAATTCACTGGTTCAAACATTTGTAACATTCTTATAATTTGTGAAGAATTGTACGTTAAAATTGAAGAGGTTAAAGTGAAAATTTGGTTAGTTAACTATTGGATTTGAAATAACAGGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTGTAAGAATATAGTTAAATTTTGCCAGATTCTTTCTCTAAAGTTACGAAGGAACGAATTAAGTTGATTTCAAAAGGGAGTATTTTATTTTATGGCAGCCAATCATCATGAACTGGCTGAGGATAAGATGGTATAGAAGAAACTTGTTGGAAATGTACCTCCAATTCATGTGTGTCTTCCTCTTCTTCCCTGGGTAAGGACTTGGATTTTGATACTGTTAAAATCATTTTTGTCATGTTCTAAATCACTCTTAAACATGTGGTTAAAGTCTACAATCAAAACATTATATATATTGTTAATACCTAGATTTGGTATCAATGGTGAATTTGAAATATTAGGGAGAGAATGGAATGGGTGTCTTGCAATACAAAAAGATCTAACACTTGTGTGGTGTTTAGCCACTAACACTTCGATGATAATTAAGTCAGTGACATTATTTCTAGATAGCTAAGAGAGTAGAGAGAGTTCGAAGTATATTTTAAATTTTTTTAGTATACTTTGAAATGTATAACATGCTCTCTTACCATTATTGAGAAATATTGTTTCATAATAGTTGTTAATCACTAATTAGCTTCTCAGACTATTAATTAAACTGCTACTAACCATTATATGACAAGTTAGTCTAGATAATCTTATTTGAAAATCTAAGTACACACAACTGACTCAAGGAATAAACACTTATACTTAATTAATTTTCTCTTTCATGACCAACTCTATTGGTCAGCCTCCACAAGGGCTCACAGGAAGAAGTTTCAGGGGTTGGCCATCTCCTCTTTCACAATTGACCAATAGACGTGTGGGCCATCGTGGCCCGACCTTATGGGTTGGGCCACACTATCTCTAGGGTCGATCTTCCCTTATGGTCGACCTTATACATTGGCCGATTTGTCCATCAAAGTTGGCCTCTCTTAGTTATAACTCTTCCCTTCTGATGGTCACTGTTAGAGTGACCTACTTAGCTTGATTTTTAACTTGTATATTGATTTTGAATGATTAAAAATATGTTTACAAGTGATTTGTTTCGGACATACTGTGAATCATACATAAATGTTAAAAGTTGTTAGTTGAATTTTGCAGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAAACTCAACCCTTTTCCTTCAACTCATAAAATTAAATGCTTTACTTG

mRNA sequence

GTGAACAGAGTTTTTGAATATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAAACTCAACCCTTTTCCTTCAACTCATAAAATTAAATGCTTTACTTG

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACCCTTTTTCCTTCTCTCTCTTCCTCCTTTAAGCTTCACAATTTGAATTTGCCCTCCAATTCAAACCCCAACAATTTTGAGATTGTGGGAAGCATCAGAGAAGATCCCATTGCCTATCTTCACCAACACAAAACTAGTTTGGCTCTTCAACTTGCAGCCCTTTTAGCCACTGTTGGGGAGCCAGCAAATGCAGTAACAGGAGACAACAACCATGAAGTTCCACTAACATGGATTTTGACACAATTGGGCATTGTTGGATTCTTCTACTTTCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGATGGATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCGGAAGAGCCATCTCAGATAAAAAATGCATACTTGAAGTACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIRWILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

Homology

[Close]

BLAST of ClCG01G006330 vs. Swiss-Prot
Match: NDHL_ARATH (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana GN=ndhL PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.9e-39
Identity = 89/191 (46.60%), Postives = 112/191 (58.64%), Query Frame = 1


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 174
           RW                     +LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

[Close]

BLAST of ClCG01G006330 vs. TrEMBL
Match: A0A0A0KSV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.2e-79
Identity = 150/196 (76.53%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 3   CSLGL-HIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIRE-DPIAY 62
           CS+GL HIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+E DPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 175
           WLRIRW                     ILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

[Close]

BLAST of ClCG01G006330 vs. TrEMBL
Match: W9S5X4_9ROSA (NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.6e-50
Identity = 107/193 (55.44%), Postives = 126/193 (65.28%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+  HIPKALPSL   +   P   +S   H+     N      E + SI + P+ Y 
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNPLSVTSKHSHSCTAKLNQ-----ETMASIIQKPVEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K+SLA+Q+ A+LA V +PA AVTG NN E  LTW L QLG+V FFYFL+ PPIIMNW
Sbjct: 61  HMKKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNW 120

Query: 121 LRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 173
           LRIRW                     +LLWAPFLNFRKFPRDPSMKYPWS PE+PS+IKN
Sbjct: 121 LRIRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKN 180

[Close]

BLAST of ClCG01G006330 vs. TrEMBL
Match: D7T8Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-47
Identity = 106/193 (54.92%), Postives = 130/193 (67.36%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS  + IPKALP L  S+  FPSLS S    ++   S+ +    + + SI +  + Y+
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSIS----SIQKQSH-HAKPIKTITSIIKKSVDYI 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
             +K SLA+Q+ ALLATV +PA AVTG N  EV L W+L QLGIV F+YFLI PPIIMNW
Sbjct: 61  STNKHSLAIQVGALLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNW 120

Query: 121 LRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 173
           LRIRW                     ++LWAPFLNFRKFPRDPSMKYPWSTP+ P+Q+KN
Sbjct: 121 LRIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKN 180

[Close]

BLAST of ClCG01G006330 vs. TrEMBL
Match: B9SP72_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 108/196 (55.10%), Postives = 122/196 (62.24%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPS-LSSSFK-LHNLNLPSNSNPNNFEIVGSIREDPIA 60
           M+CSL  HIP+ALPSLS  +   P  +SS +K +HN  L           V SIR  P  
Sbjct: 1   MSCSLSFHIPQALPSLSPHRRKAPFYISSKYKPVHNSKLDKK--------VSSIRRSPEG 60

Query: 61  YLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIM 120
           Y    K SLA+QL A  ATV + A AVTG NN E  LTW+L Q  IV F+YFLI PPIIM
Sbjct: 61  YNDVKKFSLAVQLGAFFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIM 120

Query: 121 NWLRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQI 174
           NW+R+RW                     ILLWAPFLNFRKFPRDPSMKYPWSTPE PSQI
Sbjct: 121 NWMRVRWYRRKLFEMYLQFMFTFIFFPGILLWAPFLNFRKFPRDPSMKYPWSTPENPSQI 180

[Close]

BLAST of ClCG01G006330 vs. TrEMBL
Match: A0A0F7CYX7_9ROSI (NADH dehydrogenase-like complex L OS=Francoa sonchifolia GN=NDHL PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44
Identity = 101/189 (53.44%), Postives = 124/189 (65.61%), Query Frame = 1


Query: 5   LGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQHK 64
           +  ++ KALPS  +S+   PSLS   K H  +    +  N        ++ PI YL+  K
Sbjct: 1   MSFYLIKALPSFCNSQCRIPSLSIKCKHHEHSHNVRTKKN--------QQKPIDYLNLKK 60

Query: 65  TSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRIR 124
           +SLA+Q+ A+LATV EPA AVTG+NN E  L W+L QLGIV F+YFLI PPIIMNWLRIR
Sbjct: 61  SSLAVQIGAILATV-EPAMAVTGENNRE-DLVWVLIQLGIVAFWYFLIMPPIIMNWLRIR 120

Query: 125 W---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLK 173
           W                     ILLWAPFLNFRKFPRDP MKYPWSTP++P++IKN YLK
Sbjct: 121 WYRRKLGEMYLQFMFVFMFFPGILLWAPFLNFRKFPRDPDMKYPWSTPDDPTKIKNDYLK 179

[Close]

BLAST of ClCG01G006330 vs. TAIR10
Match: AT1G70760.1 (AT1G70760.1 inorganic carbon transport protein-related)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-40
Identity = 89/191 (46.60%), Postives = 112/191 (58.64%), Query Frame = 1


Query: 4   SLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYLHQH 63
           SLGL+ P ALPSLS       S+ S F + +   P+++  +N   V  +R      L   
Sbjct: 6   SLGLYAPNALPSLSLKPR---SVKSPFCITSHTKPNDTLLHN---VNKMRAKACDILGAK 65

Query: 64  KTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNWLRI 123
           KT LA QL A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFL+ PPIIMNWLR+
Sbjct: 66  KTILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 125

Query: 124 RW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYL 174
           RW                     +LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YL
Sbjct: 126 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 185

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: gi|449464794|ref|XP_004150114.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 1.8e-79
Identity = 150/196 (76.53%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 3   CSLGL-HIPKALPSLSSSKTLFPSLSSSFKLHNLN-LPSNSNPNNFEIVGSIRE-DPIAY 62
           CS+GL HIPKALPSLSSSKTLFPSL S FKLHN N LPSNSNP NF+IVGSI+E DPI Y
Sbjct: 6   CSIGLLHIPKALPSLSSSKTLFPSLYSPFKLHNFNILPSNSNPKNFKIVGSIKEEDPIGY 65

Query: 63  LHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMN 122
           LH+ KTSLAL LAA LATVGEPA+AVTG+NNHEVPLTW+L QLG++GFFYFL+FPPIIMN
Sbjct: 66  LHKKKTSLALHLAAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMN 125

Query: 123 WLRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIK 175
           WLRIRW                     ILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IK
Sbjct: 126 WLRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIK 185

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: gi|659074603|ref|XP_008437693.1| (PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 7.1e-60
Identity = 116/151 (76.82%), Postives = 123/151 (81.46%), Query Frame = 1


Query: 46  FEIVGSIRE-DPIAYLHQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGI 105
           FEIVGSI+E DPI YL + KTSLALQLAA LATVGEPA+AVTGDNNHEVPLTW+L QLG 
Sbjct: 3   FEIVGSIKEEDPIGYLDKKKTSLALQLAAFLATVGEPASAVTGDNNHEVPLTWVLAQLGF 62

Query: 106 VGFFYFLIFPPIIMNWLRIRW---------------------ILLWAPFLNFRKFPRDPS 165
           VGFFYFL+FPPIIMNWLRIRW                     ILLWAPFLNFRKFPRDPS
Sbjct: 63  VGFFYFLVFPPIIMNWLRIRWYRRNLLEMYIQFMCVFLFFPGILLWAPFLNFRKFPRDPS 122

Query: 166 MKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW 175
           MKYPWSTP++PSQIKNAYLKYPFAKPEDYDW
Sbjct: 123 MKYPWSTPQDPSQIKNAYLKYPFAKPEDYDW 153

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: gi|703119800|ref|XP_010101957.1| (NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis])

HSP 1 Score: 205.7 bits (522), Expect = 6.6e-50
Identity = 107/193 (55.44%), Postives = 126/193 (65.28%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+  HIPKALPSL   +   P   +S   H+     N      E + SI + P+ Y 
Sbjct: 1   MSCSISFHIPKALPSLGLPQRRNPLSVTSKHSHSCTAKLNQ-----ETMASIIQKPVEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K+SLA+Q+ A+LA V +PA AVTG NN E  LTW L QLG+V FFYFL+ PPIIMNW
Sbjct: 61  HMKKSSLAVQIGAVLAIVEQPAFAVTGVNN-EQDLTWTLIQLGVVAFFYFLVMPPIIMNW 120

Query: 121 LRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 173
           LRIRW                     +LLWAPFLNFRKFPRDPSMKYPWS PE+PS+IKN
Sbjct: 121 LRIRWYKRNLLETYFQFMFVFIFFAGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSKIKN 180

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: gi|225424301|ref|XP_002284666.1| (PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera])

HSP 1 Score: 197.2 bits (500), Expect = 2.4e-47
Identity = 106/193 (54.92%), Postives = 130/193 (67.36%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS  + IPKALP L  S+  FPSLS S    ++   S+ +    + + SI +  + Y+
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSIS----SIQKQSH-HAKPIKTITSIIKKSVDYI 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
             +K SLA+Q+ ALLATV +PA AVTG N  EV L W+L QLGIV F+YFLI PPIIMNW
Sbjct: 61  STNKHSLAIQVGALLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNW 120

Query: 121 LRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 173
           LRIRW                     ++LWAPFLNFRKFPRDPSMKYPWSTP+ P+Q+KN
Sbjct: 121 LRIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKN 180

[Close]

BLAST of ClCG01G006330 vs. NCBI nr
Match: gi|1009154931|ref|XP_015895439.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-47
Identity = 103/193 (53.37%), Postives = 127/193 (65.80%), Query Frame = 1


Query: 1   MNCSLGLHIPKALPSLSSSKTLFPSLSSSFKLHNLNLPSNSNPNNFEIVGSIREDPIAYL 60
           M+CS+   IPKALPSLS       SL  + K  + N+ ++S      ++    ++P+ Y 
Sbjct: 1   MSCSISFQIPKALPSLSRPIQR-ASLFITSKHRDCNITNHSKKKLEHVI----QNPLEYF 60

Query: 61  HQHKTSLALQLAALLATVGEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLIFPPIIMNW 120
           H  K SLA+ +  +LATV +PA AVTG N +E  LTW+L QLGIV FFYFL+ PPI+MNW
Sbjct: 61  HVKKASLAIHVGTVLATVEQPAFAVTGVN-YEADLTWVLIQLGIVAFFYFLVVPPIVMNW 120

Query: 121 LRIRW---------------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKN 173
           LRIRW                     +LLWAPFLNFRKFPRDPSMKYPWS PE+PSQIKN
Sbjct: 121 LRIRWYKRNLLEMYFQFMFVFLFFPGVLLWAPFLNFRKFPRDPSMKYPWSKPEDPSQIKN 180

The following BLAST results are available for this feature:

BLAST of ClCG01G006330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHL_ARATH	6.9e-39	46.60	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of ClCG01G006330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV9_CUCSA	1.2e-79	76.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569340 PE=4 SV=1	[more]
W9S5X4_9ROSA	4.6e-50	55.44	NAD(P)H-quinone oxidoreductase subunit L OS=Morus notabilis GN=L484_011974 PE=4 ...	[more]
D7T8Q0_VITVI	1.6e-47	54.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05290 PE=4 SV=...	[more]
B9SP72_RICCO	1.8e-46	55.10	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629280 PE=4 SV=1	[more]
A0A0F7CYX7_9ROSI	1.0e-44	53.44	NADH dehydrogenase-like complex L OS=Francoa sonchifolia GN=NDHL PE=2 SV=1	[more]

BLAST of ClCG01G006330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70760.1	3.9e-40	46.60	inorganic carbon transport protein-related	[more]

BLAST of ClCG01G006330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464794\|ref\|XP_004150114.1\|	1.8e-79	76.53	PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sati...	[more]
gi\|659074603\|ref\|XP_008437693.1\|	7.1e-60	76.82	PREDICTED: uncharacterized protein LOC103483037 [Cucumis melo]	[more]
gi\|703119800\|ref\|XP_010101957.1\|	6.6e-50	55.44	NAD(P)H-quinone oxidoreductase subunit L [Morus notabilis]	[more]
gi\|225424301\|ref\|XP_002284666.1\|	2.4e-47	54.92	PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera]	[more]
gi\|1009154931\|ref\|XP_015895439.1\|	3.1e-47	53.37	PREDICTED: NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019654	NADH-quinone_OxRdatse_su_L

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G006330.1	ClCG01G006330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 91..126 score: 1.
None	No IPR available	PANTHER	PTHR36727	FAMILY NOT NAMED	coord: 1..174 score: 8.7
None	No IPR available	PANTHER	PTHR36727:SF2	SUBFAMILY NOT NAMED	coord: 1..174 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G006330	Csa5G569340	Cucumber (Chinese Long) v2	cuwcgB372
ClCG01G006330	MELO3C005297	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G006330	Cla003933	Watermelon (97103) v1	wcgwmB143
ClCG01G006330	Cla97C01G006630	Watermelon (97103) v2	wcgwmbB089
ClCG01G006330	Bhi12G000791	Wax gourd	wcgwgoB191
ClCG01G006330	CSPI05G19500	Wild cucumber (PI 183967)	cpiwcgB388
ClCG01G006330	Cucsa.280300	Cucumber (Gy14) v1	cgywcgB484
ClCG01G006330	CmaCh04G021200	Cucurbita maxima (Rimu)	cmawcgB638
ClCG01G006330	CmoCh04G022190	Cucurbita moschata (Rifu)	cmowcgB640
ClCG01G006330	Lsi09G006670	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G006330	Cp4.1LG01g18410	Cucurbita pepo (Zucchini)	cpewcgB373
ClCG01G006330	CsGy5G019010	Cucumber (Gy14) v2	cgybwcgB340
ClCG01G006330	MELO3C005297.2	Melon (DHL92) v3.6.1	medwcgB017
ClCG01G006330	Carg26068	Silver-seed gourd	carwcgB0420
ClCG01G006330	CsaV3_5G028340	Cucumber (Chinese Long) v3	cucwcgB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G006330	Cucurbita moschata (Rifu)	cmowcgB638
ClCG01G006330	Cucurbita maxima (Rimu)	cmawcgB257
ClCG01G006330	Cucurbita maxima (Rimu)	cmawcgB634
ClCG01G006330	Cucurbita maxima (Rimu)	cmawcgB636
ClCG01G006330	Cucurbita moschata (Rifu)	cmowcgB245
ClCG01G006330	Cucurbita moschata (Rifu)	cmowcgB636
ClCG01G006330	Cucurbita pepo (Zucchini)	cpewcgB169
ClCG01G006330	Cucurbita pepo (Zucchini)	cpewcgB370
ClCG01G006330	Cucurbita pepo (Zucchini)	cpewcgB371
ClCG01G006330	Cucumber (Gy14) v2	cgybwcgB336
ClCG01G006330	Silver-seed gourd	carwcgB0170
ClCG01G006330	Silver-seed gourd	carwcgB0183
ClCG01G006330	Silver-seed gourd	carwcgB0419
ClCG01G006330	Silver-seed gourd	carwcgB0856
ClCG01G006330	Cucumber (Chinese Long) v3	cucwcgB389
ClCG01G006330	Watermelon (97103) v2	wcgwmbB120