Cp4.1LG01g17490 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger protein, putative
Location	Cp4.1LG01 : 12710904 .. 12713257 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACACATTTTAAAAATTTATTTGTAGTGCAATGTTGTTTTGAATTCTGCTTCTTGCTAATGTTGCGTCCTACTCCACTCTTAAGCTCCGCATCCATCCTCATTTTCCCTCCTCTTGCCCTACGCGACGCCAAACAACAAATGTTAACGCTAATTTCTCTCTCACAATCCAATCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCGACTCCGAATTTTCATTTTCCAGGTACGTCTTCTACTCATTTCCTTGCACTCAAACCACACTCTTCCGGCTGCGTTCTGTTCCATCTCCAACAATTTCATATCAATCTTCACGATATTTTGTATTCTGCCGGAGTGAGTTCCAATTGAAGTTGAGCCTACACGTTTTCCATTTTGGACTCTGCACCGATCTGCACTTTCCTTTCAATTGACGTCTTGTTCACAATGTGTGCATCTTAATTTGCGTTTTGAATGGAGCCCTAACATGTTTTATCCTATCATTTTGAATGAATTATTTGCTCTGGAAATGACTGGTTAGATCTTCTCTGTTCTCTGTTTTAGCATCTGAATCTTATCGTCCGCTATTTCTGTAAGTTTAATTCACCGATTCCTTGGAGAGTACTCTGTTTCGAAATATTAGGGACATGAGCCTGGACATTAATTCTACGTAGCCAATGAACACTTCAAAATGCTGATAGATCTTCTTTTCTCTGTGCATAAAATCGCCTTTGATTAGTTTATCAATTTTTATCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGGCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGAACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGNGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGAACGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAGTTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGGTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGTAATGATACGATCTGAATAACTTCAATTTATATGCGGAGTATGCATACTTTTCTTCAAACAATTTTCTCAATCAGACGCGTTAAATTTTTGGGAAAAACATTGATCTGTAATAAATGGAGTTGGGTTTTGTAATTTGTATGTGCTATTTGCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACCATCGACGTGTGATGATTAAATGTAGTGCAAAATTTGTTGGAATAAAAAAAAAAAAGAAGTTAGATTTCGCATATTTCTTTGCTACTACAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCCCTCGATATCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCCGAAGATGATGACATTGAAGTTGTTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGAACCAAAAAGAGACTTCTAGTTTTTGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCAGAAATGCATACACCACTTTGTTTTGAAACACTCATACTTAGCTTATGTGCACATGTGCATACTTTGCATGTGCATACTTTGATGTGTACGTGTTATTCTTCTAAGGAAAAGGTTGTGTTGCTAC

mRNA sequence

ATACACATTTTAAAAATTTATTTGTAGTGCAATGTTGTTTTGAATTCTGCTTCTTGCTAATGTTGCGTCCTACTCCACTCTTAAGCTCCGCATCCATCCTCATTTTCCCTCCTCTTGCCCTACGCGACGCCAAACAACAAATGTTAACGCTAATTTCTCTCTCACAATCCAATCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCGACTCCGAATTTTCATTTTCCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGGCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGAACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGNGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGAACGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAGTTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGGTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCCCTCGATATCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCCGAAGATGATGACATTGAAGTTGTTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGAACCAAAAAGAGACTTCTAGTTTTTGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCAGAAATGCATACACCACTTTGTTTTGAAACACTCATACTTAGCTTATGTGCACATGTGCATACTTTGCATGTGCATACTTTGATGTGTACGTGTTATTCTTCTAAGGAAAAGGTTGTGTTGCTAC

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGGCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGAACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGNGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGAACGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAGTTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGGTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCCCTCGATATCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCCGAAGATGATGACATTGAAGTTGTTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAACACATCCATGAGGTTCTTTATGGTTCCACCACTGAGAGAACCAAAAAGAGACTTCTAGTTTTTGTTCAACTTTGCTCATCCCAACAAGAAGAATAG

Protein sequence

MEDRQGKRSSKAAIIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPXTGHYHQETNSKIPTILDRYAEKHERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYLTHGLKSRNNHSLTGIAATTQSNSLDITFKTELSRRGHSINSIHNLNTDWSPEDDDIEVVVPETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQEE

Homology

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BLAST of Cp4.1LG01g17490 vs. Swiss-Prot
Match: Z36L3_MOUSE (Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 221 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTKP 273
           SG  S  +  +Y+T++CR +E+SG C++GHKCQFAHG  ELR +  H   KT+P
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTEP 165

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BLAST of Cp4.1LG01g17490 vs. Swiss-Prot
Match: TISD_MOUSE (Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-08
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 222 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYLTH 281
           G GS ++  +Y+T++CR +E+SG+C++G KCQFAHG  ELR +    K K +    + T 
Sbjct: 146 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTI 205

Query: 282 G 283
           G
Sbjct: 206 G 206

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BLAST of Cp4.1LG01g17490 vs. Swiss-Prot
Match: TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-07
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 227 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKF 275
           ++ ++Y+T++CR +E++G C++G KCQFAHG  ELR VH   K K ++
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEY 178

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BLAST of Cp4.1LG01g17490 vs. Swiss-Prot
Match: TISB_MOUSE (Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 208 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 267
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 268 LKTKPKFGEPYLTHG 283
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of Cp4.1LG01g17490 vs. Swiss-Prot
Match: TISB_RAT (Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1


Query: 208 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 267
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 268 LKTKPKFGEPYLTHG 283
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of Cp4.1LG01g17490 vs. TrEMBL
Match: A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.8e-81
Identity = 173/259 (66.80%), Postives = 202/259 (77.99%), Query Frame = 1


Query: 143 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 202
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 203 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 262
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 263 PVHLPLKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLDITFKTELSRR---- 322
           P  LP++TK KF E   T+G K RNNHSLTGIAATT     SN +D   KTELS+R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 323 ------GHSINSIHNLNT----DWSPEDDDIEVVVPETKST-RGDVDQHIHEVLYGSTTE 382
                 GH+ N+   ++T    +WSPEDD I++ VP T+ST R DV+QHIHEVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

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BLAST of Cp4.1LG01g17490 vs. TrEMBL
Match: A5B230_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.1e-33
Identity = 104/281 (37.01%), Postives = 153/281 (54.45%), Query Frame = 1


Query: 121 SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 180
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 181 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 240
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 241 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFG-------EPYLTHGLKSRNNHSL 300
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 301 TGIAATTQSNSLDITFKTELSRRGHSINSIHNLNT--------DWSPEDDDIEVVVP--- 360
             + +TTQ            SR  H+      + T        DWSP DD IEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAAXTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 361 -ETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQ 381
            E  ++R +V+ +I+  LYG TT R  +RL VF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

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BLAST of Cp4.1LG01g17490 vs. TrEMBL
Match: K7KPS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.9e-28
Identity = 110/352 (31.25%), Postives = 171/352 (48.58%), Query Frame = 1


Query: 43  QETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPXTGHYHQETNSKIPTILDRYAEKHERS 102
           + +NSK  ++  R + ++     I S  R      G Y Q T   +      YAE  +  
Sbjct: 2   ERSNSKKKSLKSRLSNENVPPLQIDSEERR-----GRYLQPT--AMSPRFQPYAENIDAG 61

Query: 103 TPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGG 162
           +P+  +  + SP+ GK+   G+ F +P      A      + +  +S+ GSSSF SR G 
Sbjct: 62  SPLTRHLFAGSPLSGKVAGDGEAFISPKFGARTAK----ALQYCGTSSGGSSSFCSR-GW 121

Query: 163 SSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSG 222
            + SPLS++EN+E  P+RSP +Y TP    ++VIVMD IL+  V GG     S+  S   
Sbjct: 122 LTSSPLSSLENMEIAPLRSPPVYRTPSTGDDDVIVMDAILVRPVSGGTSGRSSSSSSRGS 181

Query: 223 GGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPK-------FG 282
             SS +K+ ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +        G
Sbjct: 182 SSSSTAKSVFKTEICKAREESGNSRYNSKSQYGRVPEEDRSIILARKRKSEAETSSSSVG 241

Query: 283 EPYLTHGLKS---------RNNHSLTGIAATTQSNSLDITFKTELSRRGHSINSIHNLNT 342
               THG  S          ++ +++    T+  +  ++T     S   H   +  N   
Sbjct: 242 AESSTHGPSSDVHQQYAAAESDPAVSTSQPTSAESDHEVTTSEPTSAETHDTLTDSNTFN 301

Query: 343 DWSPEDDDIEVVV--PETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLC 377
           DWSP DD IEVV+   +   +R  VD HI  + +G T    K+RLLVF  +C
Sbjct: 302 DWSPLDDGIEVVLLGSDKAPSREQVDVHISGIQHGWT---GKRRLLVFEAIC 338

[Close]

BLAST of Cp4.1LG01g17490 vs. TrEMBL
Match: K7L5F5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 99/290 (34.14%), Postives = 153/290 (52.76%), Query Frame = 1


Query: 95  YAEKHERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSS 154
           +AE  +  +P+  Y  + SP+ GK  +  + F +P      A      + +  +S+ GSS
Sbjct: 46  FAENVDAGSPLTRYLFAGSPLSGKFAAASEAFVSPKFGARTAK----ALQYCGTSSGGSS 105

Query: 155 SFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLK 214
           SFGSR G  + SPLS++EN+E  P+ SP +Y TP    ++VIVMD IL+  V GG K+ +
Sbjct: 106 SFGSR-GRLTPSPLSSLENMEFAPLLSPPVYRTPSTGDDDVIVMDAILVRPVSGG-KSGR 165

Query: 215 SALDSGSG---GGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTK 274
           S+  SG G     SS  KN ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K
Sbjct: 166 SSSSSGRGSFSSSSSTGKNVFKTEICKAREESGNSRYNSKSQYGRVPEEYRSIILARKRK 225

Query: 275 PKFGEPYLTHGLKSRNNHSLTGI---AATTQSNSLDITFKTELSRRGHSINSIHNLNTDW 334
            +      + G  S  +   + +    A  +S+ + +T     S   H+  +  N   DW
Sbjct: 226 SEEETSSSSVGAGSSMHDPSSHVHQHYAAAESDPVVVT-SQPTSAEPHNALTDSNAFNDW 285

Query: 335 SPEDDDIEVVVP--ETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLC 377
           SP DD  EVV+P  +   +R +VD +I  + +G T    KKRL VF  +C
Sbjct: 286 SPLDDITEVVLPASDKAPSREEVDAYISGIQHGRT---GKKRLPVFEAIC 325

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BLAST of Cp4.1LG01g17490 vs. TrEMBL
Match: A0A072UPE4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 75/175 (42.86%), Postives = 111/175 (63.43%), Query Frame = 1


Query: 105 IVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFA--SSTSGSSSFGSRRGG 164
           +  YF + SPV  K    GD+F++P+    ++ YR +    ++  S++SG +S  S RG 
Sbjct: 56  LAKYFYAVSPVSAKS---GDSFTSPIYG--SSKYRLAKTPPYSGTSNSSGGNSSFSSRGR 115

Query: 165 SSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSG 224
            SLSPL++IENLE   + SP++Y TP+K  EEVIVMD+I + S+ GG     S+  S SG
Sbjct: 116 LSLSPLASIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRSMSGGKNRRSSSSSSSSG 175

Query: 225 GGSSLSKNQ------YRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTK 272
            GSS S +       ++ ++CR+WE+SG+CR+  KCQFAHG+EEL    L +K+K
Sbjct: 176 RGSSSSSSSSSKSVLFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSK 225

[Close]

BLAST of Cp4.1LG01g17490 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 233 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYLT-----HGLKSRN 292
           +T++C  W+++G+C +G  CQFAHG +ELRPV    + K +     +T     +G +   
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293

[Close]

BLAST of Cp4.1LG01g17490 vs. TAIR10
Match: AT1G68200.1 (AT1G68200.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.6e-06
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1


Query: 233 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPV 265
           +T++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV 255

[Close]

BLAST of Cp4.1LG01g17490 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 8.0e-06
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 1


Query: 205 SVHGGAKTLKSALDSGSGGGSS------LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGK 262
           SV GG  +    +  G GG  S      L  + ++T IC  WE +G C FG KC FAHG 
Sbjct: 228 SVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGA 287

[Close]

BLAST of Cp4.1LG01g17490 vs. NCBI nr
Match: gi|449462413|ref|XP_004148935.1| (PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 174/261 (66.67%), Postives = 204/261 (78.16%), Query Frame = 1


Query: 141 SIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDE 200
           +I+NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD 
Sbjct: 57  NIMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDG 116

Query: 201 ILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE 260
           ILISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+
Sbjct: 117 ILISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKED 176

Query: 261 LRPVHLPLKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLDITFKTELSRR-- 320
           LRP  LP++TK KF E   T+G K RNNHSLTGIAATT     SN +D   KTELS+R  
Sbjct: 177 LRPGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGL 236

Query: 321 --------GHSINSIHNLNT----DWSPEDDDIEVVVPETKST-RGDVDQHIHEVLYGST 380
                   GH+ N+   ++T    +WSPEDD I++ VP T+ST R DV+QHIHEVLYGST
Sbjct: 237 TPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGST 296

Query: 381 TERTKKRLLVFVQLCSSQQEE 383
           TERTKKRL VFVQ+CS + +E
Sbjct: 297 TERTKKRLPVFVQICSEELQE 311

[Close]

BLAST of Cp4.1LG01g17490 vs. NCBI nr
Match: gi|700188781|gb|KGN44014.1| (hypothetical protein Csa_7G103290 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 5.5e-81
Identity = 173/259 (66.80%), Postives = 202/259 (77.99%), Query Frame = 1


Query: 143 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 202
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 203 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 262
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 263 PVHLPLKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLDITFKTELSRR---- 322
           P  LP++TK KF E   T+G K RNNHSLTGIAATT     SN +D   KTELS+R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 323 ------GHSINSIHNLNT----DWSPEDDDIEVVVPETKST-RGDVDQHIHEVLYGSTTE 382
                 GH+ N+   ++T    +WSPEDD I++ VP T+ST R DV+QHIHEVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

[Close]

BLAST of Cp4.1LG01g17490 vs. NCBI nr
Match: gi|502142052|ref|XP_004504769.1| (PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum])

HSP 1 Score: 188.0 bits (476), Expect = 3.1e-44
Identity = 122/297 (41.08%), Postives = 180/297 (60.61%), Query Frame = 1


Query: 95  YAEKHERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSS 154
           YAE  +  +P+  YF + SP+ GK     ++F++P+    ++ YRS+ +  + +++SG+S
Sbjct: 51  YAENIDTGSPLARYFFAGSPISGKS---SESFTSPIFG--SSKYRSARMQQYCATSSGNS 110

Query: 155 SFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKT 214
           SFGSR G  SLSPLS+IEN+E  P+ SP +YGTP+KV EEVIVMD+I +  + GG   ++
Sbjct: 111 SFGSR-GRLSLSPLSSIENMEIKPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRS 170

Query: 215 LKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKP 274
             S+   GSG  SS SK+ Y+TDICR+WE+SG+CR+  KCQFAHG+EEL P  L +K+K 
Sbjct: 171 SSSSSSRGSGSSSSSSKSVYKTDICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKS 230

Query: 275 KFGEPYL-------THGLKSRNNHSLTGIAATTQSNSLDITFKTELSRRGHSINSIHNLN 334
           +     L       T+G  SR  H    +  +  + +  IT +        S ++  N+ 
Sbjct: 231 EAQTSKLSIRLGQGTYGPNSRVVHEHPAVTESECALTGLITSQPASPEPYRSTHANSNII 290

Query: 335 TDWSPEDDDIEVVVP---ETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQ 380
            DWSP DD I+VV+P   +   +R +VD +I  +L   T   TK+RL VFV +C  Q
Sbjct: 291 NDWSPLDDGIDVVLPNGSDKVPSREEVDAYIFGLLNEPT---TKRRLPVFVAICEGQ 337

[Close]

BLAST of Cp4.1LG01g17490 vs. NCBI nr
Match: gi|720016204|ref|XP_010261083.1| (PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera])

HSP 1 Score: 159.8 bits (403), Expect = 9.2e-36
Identity = 99/224 (44.20%), Postives = 131/224 (58.48%), Query Frame = 1


Query: 162 GSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGS 221
           GSS SPLS+IENLET P +SP ++ TP+KV E+V+VMD IL+ SV GG    +S  DSGS
Sbjct: 100 GSSPSPLSSIENLETPPSKSPPVFATPVKVEEDVLVMDGILVGSVPGGRT--RSGPDSGS 159

Query: 222 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPK------FG 281
              SS   + Y+T+ICR+WED+G+CR+G KCQFAHGKEELRP  +  K K +      F 
Sbjct: 160 ---SSSGNSLYKTEICRAWEDTGNCRYGSKCQFAHGKEELRPTRVSSKNKSEGQLCKSFA 219

Query: 282 EPYLTHGLKSRNNHSLTGIAATTQSNSLDITFKTELSRRGHSINSIHNLNTDWSPEDDDI 341
                +G K R  H +   + +  + S   T              I     DWSP DD I
Sbjct: 220 TGTCAYGSKCRFIHHMAVSSPSRTATSAGAT------------TMIKPEQDDWSPADDGI 279

Query: 342 EVVVPETKS---TRGDVDQHIHEVLYGSTTERTKKRLLVFVQLC 377
           EV +P +     TR DV+ +IH+VLYG +    +KRL VF ++C
Sbjct: 280 EVRLPSSTEHCPTREDVNLYIHDVLYGPS---RRKRLPVFAEIC 303

[Close]

BLAST of Cp4.1LG01g17490 vs. NCBI nr
Match: gi|731397458|ref|XP_010652879.1| (PREDICTED: tristetraprolin [Vitis vinifera])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 104/281 (37.01%), Postives = 154/281 (54.80%), Query Frame = 1


Query: 121 SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 180
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 181 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 240
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 241 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFG-------EPYLTHGLKSRNNHSL 300
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 301 TGIAATTQSNSLDITFKTELSRRGHSINSIHNLNT--------DWSPEDDDIEVVVP--- 360
             + +TTQ            SR  H+  +   + T        DWSP DD IEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 361 -ETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQ 381
            E  ++R +V+ +I+  LYG TT R  +RL VF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Z36L3_MOUSE	2.8e-08	50.00	Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1	[more]
TISD_MOUSE	6.2e-08	42.62	Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2	[more]
TIS11_DROME	1.4e-07	45.83	Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2	[more]
TISB_MOUSE	3.1e-07	37.33	Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1	[more]
TISB_RAT	3.1e-07	37.33	Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV...	[more]

BLAST of Cp4.1LG01g17490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K529_CUCSA	3.8e-81	66.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1	[more]
A5B230_VITVI	5.1e-33	37.01	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1	[more]
K7KPS7_SOYBN	4.9e-28	31.25	Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1	[more]
K7L5F5_SOYBN	2.7e-26	34.14	Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1	[more]
A0A072UPE4_MEDTR	1.7e-25	42.86	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g17490 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66810.1	2.1e-06	36.92	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	3.6e-06	53.13	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G32360.1	8.0e-06	41.27	Zinc finger (CCCH-type) family protein	[more]

BLAST of Cp4.1LG01g17490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462413\|ref\|XP_004148935.1\|	1.9e-81	66.67	PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus]	[more]
gi\|700188781\|gb\|KGN44014.1\|	5.5e-81	66.80	hypothetical protein Csa_7G103290 [Cucumis sativus]	[more]
gi\|502142052\|ref\|XP_004504769.1\|	3.1e-44	41.08	PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum]	[more]
gi\|720016204\|ref\|XP_010261083.1\|	9.2e-36	44.20	PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera]	[more]
gi\|731397458\|ref\|XP_010652879.1\|	4.3e-33	37.01	PREDICTED: tristetraprolin [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17490.1	Cp4.1LG01g17490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 229..264 score: 3.0
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 232..258 score: 3.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 231..258 score: 5.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 231..259 score: 15
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 231..263 score: 6.
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 292..318 score: 2.1E-12coord: 222..273 score: 2.1
None	No IPR available	PANTHER	PTHR12547:SF72	ZINC FINGER PROTEIN 36, C3H1 TYPE-LIKE 2	coord: 292..318 score: 2.1E-12coord: 222..273 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g17490	CmaCh00G001400	Cucurbita maxima (Rimu)	cmacpeB000
Cp4.1LG01g17490	CmoCh04G020900	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17490	CmoCh04G021240	Cucurbita moschata (Rifu)	cmocpeB685
Cp4.1LG01g17490	Carg27168	Silver-seed gourd	carcpeB0708
Cp4.1LG01g17490	Carg27581	Silver-seed gourd	carcpeB1166

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17490	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g17490	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17490	Cucurbita moschata (Rifu)	cmocpeB682
Cp4.1LG01g17490	Bottle gourd (USVL1VR-Ls)	cpelsiB313