CmoCh04G020900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger C-x8-C-x5-C-x3-H type protein
LocationCmo_Chr04 : 12720960 .. 12723057 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCCGCATCCATCGTCATTTTCCGTCCTCTTGCCCTACACGACGCCAAACAACAAATGTTGACGCTAATCTCTCTCTCGCAATCCAACCCTCTCACCTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTCATTTTCCAGGTACGTCTTCTACTCATTTCCTTGCACTCAAACCACACTCTTCCGGCTGCGTTCTGTTCCATCTCCAACAATTTCAAATCAATCTTCACGATATTTTCTATTCTGCCGGTGTGAGTTCCAATTGAAGTTGAGCCTTCACGTTTTCCACTTTGGACTCTGCACCGATCTGCACTTTCCTTTCAATTGACCACTTGTTCACAATGTGTGCATCTTAATTTGCGTTTTGAATGGAGCCCTAACATGTTTGATCCTATCACTTTGAATGAATTATTTTCTCTAGAAATGACTGGTTAGATCTTCTCTGTTCTCTGTTTTAGCATCTGACTCTTATCATCCGCTATTTCTGTAAGTTTAATTCACCGATTCCTTGGAGAGTACTGCATCAGGATTGAACAAATCTCTGTTTCGAAATATTAGGGACATGAGCCTGGACATTAATTCTACGTCGCCAATGAACACTTCAAAATGCCGATAGATCTTCTTTTCTCTGTGCATAAAATCGCCTTTGATTAGTTTATCAATTTTCATCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACCCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAGCGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGTAATGGTACGATCTGTATAACTTCAATTTATATGCGGAGTATGCATACTTTTCTTCAAACAATTTTCTCAATCAGACGCGTTAAATTTTTGGGAAAAACATTGATCTGTAATAAATGGAGTTGGGTTTTGTAATTTGTATGTGCTATTTGCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTGTGATGATTAAATATAGTGCAAAATTTGTTGGAATAAAAAAAAATGTTAGATTTAGCATATTTCTTTGCTACTACAGTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAATACATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCAT

mRNA sequence

AGCTCCGCATCCATCGTCATTTTCCGTCCTCTTGCCCTACACGACGCCAAACAACAAATGTTGACGCTAATCTCTCTCTCGCAATCCAACCCTCTCACCTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTCATTTTCCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACCCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAGCGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAATACATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCAT

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACCCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAGCGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAG
Homology
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BLAST of CmoCh04G020900 vs. Swiss-Prot
Match: Z36L3_MOUSE (Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 183 GGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTKP 234
           G  S  +  +Y+ ++CR +E+SG C++GHKCQFAHG  ELR +  H   KT+P
Sbjct: 113 GSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTEP 165

[Close]
BLAST of CmoCh04G020900 vs. Swiss-Prot
Match: TISD_MOUSE (Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-07
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 1 

Query: 122 GGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESG 181
           GGSS  P           ++ P        V +E    D     +       L    +  
Sbjct: 85  GGSSCGPAGGGGLASYGQLKEPSGGSGTALVTKESKFRDRSFSENGERSQHLLHLQQQQK 144

Query: 182 GGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTK 233
           GG GS ++  +Y+ ++CR +E+SG+C++G KCQFAHG  ELR +  H   KT+
Sbjct: 145 GGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTE 197

[Close]
BLAST of CmoCh04G020900 vs. Swiss-Prot
Match: TISD_HUMAN (Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-07
Identity = 43/158 (27.22%), Postives = 70/158 (44.30%), Query Frame = 1 

Query: 89  TPVADVINANYRSSIINHFASST------------SGSSSFGSRRGGSSLSPLSAIENLE 148
           TPVA   ++ +    +   ++S             S S  F     GSS    +A     
Sbjct: 38  TPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTS 97

Query: 149 TTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGGSSLSKNQYRAD 208
              ++ P   G    +++E    D     +       L    +  GGGGS ++  +Y+ +
Sbjct: 98  YGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTE 157

Query: 209 ICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTK 233
           +CR +E+SG+C++G KCQFAHG  ELR +  H   KT+
Sbjct: 158 LCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTE 195

[Close]
BLAST of CmoCh04G020900 vs. Swiss-Prot
Match: TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-07
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 

Query: 188 LSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPF 242
           ++ ++Y+ ++CR +E++G C++G KCQFAHG  ELR VH     K K  Y R F
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVH--RHPKYKTEYCRTF 182

[Close]
BLAST of CmoCh04G020900 vs. Swiss-Prot
Match: TISB_HUMAN (Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.3e-07
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 169 GGAKTLKSALESGGGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPV--H 228
           GG + L +  + GGG    ++ ++Y+ ++CR +E++G+C++G KCQFAHG  ELR +  H
Sbjct: 94  GGERLLPTQKQPGGG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 LPLKTK 233
              KT+
Sbjct: 154 PKYKTE 156

[Close]
BLAST of CmoCh04G020900 vs. TrEMBL
Match: A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.8e-77
Identity = 172/265 (64.91%), Postives = 201/265 (75.85%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALESGGGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTELS 283
           P  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTELS
Sbjct: 121 PGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELS 180

Query: 284 RR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILEVL 343
           +R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I EVL
Sbjct: 181 KRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVL 240

Query: 344 YGSTTERAKKRLPVFVQLCSSQQEE 350
           YGSTTER KKRLPVFVQ+CS + +E
Sbjct: 241 YGSTTERTKKRLPVFVQICSEELQE 253

[Close]
BLAST of CmoCh04G020900 vs. TrEMBL
Match: A5B230_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.1e-34
Identity = 103/281 (36.65%), Postives = 152/281 (54.09%), Query Frame = 1 

Query: 82  SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 141
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALESGGGGGSSLSKNQYRADICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S         ++     Y+ +ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFG-EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+    + F       +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIATTTQSNSFDTTFKTELSRRGHSINSIHNLNT--------DWSPEDDSIEAIVP--- 321
             + +TTQ            SR  H+      + T        DWSP DD IE ++P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAAXTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQ 348
            E  ++R +V+ YI   LYG TT R  +RLPVF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

[Close]
BLAST of CmoCh04G020900 vs. TrEMBL
Match: K7KPS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.6e-28
Identity = 109/355 (30.70%), Postives = 168/355 (47.32%), Query Frame = 1 

Query: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60
           ME    K+ S  S +   N  V P++I  +        G Y Q T   +      YAE  
Sbjct: 1   MERSNSKKKSLKSRLS--NENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPYAENI 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           D  +P+  +  + SP+ GK+   G+ F +P      A      + +  +S+ GSSSF SR
Sbjct: 61  DAGSPLTRHLFAGSPLSGKVAGDGEAFISPKFGARTAK----ALQYCGTSSGGSSSFCSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALES 180
            G  + SPLS++EN+E  P+RSP +Y TP    ++VIVMD IL+  V GG     S+  S
Sbjct: 121 -GWLTSSPLSSLENMEIAPLRSPPVYRTPSTGDDDVIVMDAILVRPVSGGTSGRSSSSSS 180

Query: 181 GGGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVR-YDR 240
            G   SS +K+ ++ +IC++ E+SG+ R+  K Q+    EE R + L  K K +      
Sbjct: 181 RGSSSSSTAKSVFKTEICKAREESGNSRYNSKSQYGRVPEEDRSIILARKRKSEAETSSS 240

Query: 241 PFGEPYLTHGLKS---------RNNHSLTGIATTTQSNSFDTTFKTELSRRGHSINSIHN 300
             G    THG  S          ++ +++    T+  +  + T     S   H   +  N
Sbjct: 241 SVGAESSTHGPSSDVHQQYAAAESDPAVSTSQPTSAESDHEVTTSEPTSAETHDTLTDSN 300

Query: 301 LNTDWSPEDDSIEAIV--PETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLC 344
              DWSP DD IE ++   +   +R  VD +I  + +G T    K+RL VF  +C
Sbjct: 301 TFNDWSPLDDGIEVVLLGSDKAPSREQVDVHISGIQHGWT---GKRRLLVFEAIC 338

[Close]
BLAST of CmoCh04G020900 vs. TrEMBL
Match: A0A072UPE4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 86/240 (35.83%), Postives = 138/240 (57.50%), Query Frame = 1 

Query: 11  KASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRS---TPIV 70
           K S ++  N  V P+ +++D++      G  + ++ +  P      AE  D +   + + 
Sbjct: 3   KVSKLRTSNENVSPLMVELDDN-----RGLRYLQSTTVSPGFQPYAAENFDVTGSPSQLA 62

Query: 71  SYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFA--SSTSGSSSFGSRRGGSS 130
            YF + SPV  K    GD+F++P+    ++ YR +    ++  S++SG +S  S RG  S
Sbjct: 63  KYFYAVSPVSAKS---GDSFTSPIYG--SSKYRLAKTPPYSGTSNSSGGNSSFSSRGRLS 122

Query: 131 LSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGG 190
           LSPL++IENLE   + SP++Y TP+K  EEVIVMD+I + S+ GG     S+  S  G G
Sbjct: 123 LSPLASIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRSMSGGKNRRSSSSSSSSGRG 182

Query: 191 SSLSKNQ------YRADICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDR 240
           SS S +       ++ ++CR+WE+SG+CR+  KCQFAHG+EEL    L +K+K + +  R
Sbjct: 183 SSSSSSSSSKSVLFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSKSEAQMGR 232

[Close]
BLAST of CmoCh04G020900 vs. TrEMBL
Match: A0A0V0IC54_SOLCH (Putative zinc finger protein 36, C3H1 type-like 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 120/358 (33.52%), Postives = 172/358 (48.04%), Query Frame = 1 

Query: 11  KASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH------DRST 70
           +AS +   +  V PI  Q  N +   G G ++    SK P ILD Y+         ++ +
Sbjct: 2   QASNVHSFDGNVSPINAQ--NFI---GRGRFYP--GSKTP-ILDPYSSSESTGSSSNKVS 61

Query: 71  PIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGS 130
           P+  Y    SPV    P + D+            +RS +      STS  S  GS  GG 
Sbjct: 62  PLARYLCPNSPV----PFISDS----------PKHRSLV------STSSGSRSGSG-GGV 121

Query: 131 SLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG-AKTLKSALESGGG 190
           S SPL+++EN+E      P ++ TP+KV E+V+VMD IL+   HG  AK   S  +SGG 
Sbjct: 122 SRSPLASLENIEI-----PLMFRTPVKVEEDVVVMDGILVEPKHGPRAKLSPSTSDSGGR 181

Query: 191 GGSSLSKNQ---YRADICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRP 250
             SS   N    ++++ CR WEDSG+CRFG KC+F HGKE+LRP     + + +    R 
Sbjct: 182 LSSSTPANDNSFHKSETCRWWEDSGTCRFGSKCRFVHGKEDLRPTAFANRNQSEALLCRS 241

Query: 251 FGEPYLTHGLKSRNNHSLTGIATT-----TQSNSFDTTFKT-----ELSRRGHSINSIHN 310
           +     ++G + R+ H     A +       S    TT K      E S    S  S   
Sbjct: 242 YSSGPSSYGPRGRSVHQQVHSAASPAKEAPMSTPTTTTLKVFTKDKEPSSSDSSTTSTPT 301

Query: 311 ---LNTDWSPEDDSIEAIVPETKS---TRGDVDQYILEVLYGSTTERAKKRLPVFVQL 343
               +TDW P DD+IE  +P T     +R DV+ +I  VLYG++    +KRLP  + L
Sbjct: 302 STISSTDWCPLDDNIEVTLPSTGENCVSREDVNAHIQTVLYGTS---GRKRLPACIDL 322

[Close]
BLAST of CmoCh04G020900 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-06
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 1 

Query: 166 SVHGGAKTLKSALESGGGGGSS------LSKNQYRADICRSWEDSGSCRFGHKCQFAHGK 223
           SV GG  +    +  GGGG  S      L  + ++  IC  WE +G C FG KC FAHG 
Sbjct: 228 SVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGA 287

[Close]
BLAST of CmoCh04G020900 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 48.5 bits (114), Expect = 9.6e-06
Identity = 16/32 (50.00%), Postives = 25/32 (78.12%), Query Frame = 1 

Query: 194 RADICRSWEDSGSCRFGHKCQFAHGKEELRPV 226
           + ++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPV 265

[Close]
BLAST of CmoCh04G020900 vs. NCBI nr
Match: gi|449462413|ref|XP_004148935.1| (PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 2.6e-77
Identity = 173/267 (64.79%), Postives = 203/267 (76.03%), Query Frame = 1 

Query: 102 SIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDE 161
           +I+NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD 
Sbjct: 57  NIMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDG 116

Query: 162 ILISSVHGGAKTLKSALESGGGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEE 221
           ILISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+
Sbjct: 117 ILISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKED 176

Query: 222 LRPVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTE 281
           LRP  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTE
Sbjct: 177 LRPGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTE 236

Query: 282 LSRR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILE 341
           LS+R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I E
Sbjct: 237 LSKRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHE 296

Query: 342 VLYGSTTERAKKRLPVFVQLCSSQQEE 350
           VLYGSTTER KKRLPVFVQ+CS + +E
Sbjct: 297 VLYGSTTERTKKRLPVFVQICSEELQE 311

[Close]
BLAST of CmoCh04G020900 vs. NCBI nr
Match: gi|700188781|gb|KGN44014.1| (hypothetical protein Csa_7G103290 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 9.8e-77
Identity = 172/265 (64.91%), Postives = 201/265 (75.85%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALESGGGGGSSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTELS 283
           P  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTELS
Sbjct: 121 PGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELS 180

Query: 284 RR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILEVL 343
           +R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I EVL
Sbjct: 181 KRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVL 240

Query: 344 YGSTTERAKKRLPVFVQLCSSQQEE 350
           YGSTTER KKRLPVFVQ+CS + +E
Sbjct: 241 YGSTTERTKKRLPVFVQICSEELQE 253

[Close]
BLAST of CmoCh04G020900 vs. NCBI nr
Match: gi|502142052|ref|XP_004504769.1| (PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum])

HSP 1 Score: 197.2 bits (500), Expect = 4.7e-47
Identity = 133/340 (39.12%), Postives = 195/340 (57.35%), Query Frame = 1 

Query: 18  LNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVV 77
           LN  V P+++++D+       G Y Q T   +      YAE  D  +P+  YF + SP+ 
Sbjct: 20  LNENVSPLQVELDDK-----RGRYLQSTT--MSPGFQPYAENIDTGSPLARYFFAGSPIS 79

Query: 78  GKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLET 137
           GK     ++F++P+    ++ YRS+ +  + +++SG+SSFGSR G  SLSPLS+IEN+E 
Sbjct: 80  GKS---SESFTSPIFG--SSKYRSARMQQYCATSSGNSSFGSR-GRLSLSPLSSIENMEI 139

Query: 138 TPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKTLKSALESGGGGGSSLSKNQYRA 197
            P+ SP +YGTP+KV EEVIVMD+I +  + GG   ++  S+   G G  SS SK+ Y+ 
Sbjct: 140 KPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRSSSSSSSRGSGSSSSSSKSVYKT 199

Query: 198 DICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDR---PFGEPYLTHGLKS 257
           DICR+WE+SG+CR+  KCQFAHG+EEL P  L +K+K + +  +     G+   T+G  S
Sbjct: 200 DICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKSEAQTSKLSIRLGQG--TYGPNS 259

Query: 258 RNNHSLTGIATTTQSNSFDTTFKTELSRRGHSINSIH---NLNTDWSPEDDSIEAIVP-- 317
           R  H    +   T+S    T   T          S H   N+  DWSP DD I+ ++P  
Sbjct: 260 RVVHEHPAV---TESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPNG 319

Query: 318 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQ 347
            +   +R +VD YI  +L   TT   K+RLPVFV +C  Q
Sbjct: 320 SDKVPSREEVDAYIFGLLNEPTT---KRRLPVFVAICEGQ 337

[Close]
BLAST of CmoCh04G020900 vs. NCBI nr
Match: gi|720016204|ref|XP_010261083.1| (PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera])

HSP 1 Score: 162.9 bits (411), Expect = 9.9e-37
Identity = 117/325 (36.00%), Postives = 166/325 (51.08%), Query Frame = 1 

Query: 25  IKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSVG 84
           I  Q D+ L++G  G Y   +++  P I +      D  + ++ Y R+       L    
Sbjct: 21  ISPQSDDQLILGRRGRYGFTSSAFDPQIHNPL----DVDSTLIRYSRATG---ASLSPSA 80

Query: 85  DTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQ 144
           D F + + D  +  +   +++    S  GSS           SPLS+IENLET P +SP 
Sbjct: 81  DVFPSQIID--STKFHPLLLHRSNISPRGSSP----------SPLSSIENLETPPSKSPP 140

Query: 145 IYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGGSSLSKNQ-YRADICRSWED 204
           ++ TP+KV E+V+VMD IL+ SV GG         SG   GSS S N  Y+ +ICR+WED
Sbjct: 141 VFATPVKVEEDVLVMDGILVGSVPGGRT------RSGPDSGSSSSGNSLYKTEICRAWED 200

Query: 205 SGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNH--SLTGI 264
           +G+CR+G KCQFAHGKEELRP  +  K K + +  + F      +G K R  H  +++  
Sbjct: 201 TGNCRYGSKCQFAHGKEELRPTRVSSKNKSEGQLCKSFATGTCAYGSKCRFIHHMAVSSP 260

Query: 265 ATTTQSNSFDTTFKTELSRRGHSINSIHNLNTDWSPEDDSIEAIVPETKS---TRGDVDQ 324
           + T  S    T  K E                DWSP DD IE  +P +     TR DV+ 
Sbjct: 261 SRTATSAGATTMIKPE--------------QDDWSPADDGIEVRLPSSTEHCPTREDVNL 303

Query: 325 YILEVLYGSTTERAKKRLPVFVQLC 344
           YI +VLYG +    +KRLPVF ++C
Sbjct: 321 YIHDVLYGPS---RRKRLPVFAEIC 303

[Close]
BLAST of CmoCh04G020900 vs. NCBI nr
Match: gi|731397458|ref|XP_010652879.1| (PREDICTED: tristetraprolin [Vitis vinifera])

HSP 1 Score: 153.7 bits (387), Expect = 6.0e-34
Identity = 103/281 (36.65%), Postives = 153/281 (54.45%), Query Frame = 1 

Query: 82  SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 141
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALESGGGGGSSLSKNQYRADICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S         ++     Y+ +ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFG-EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+    + F       +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIATTTQSNSFDTTFKTELSRRGHSINSIHNLNT--------DWSPEDDSIEAIVP--- 321
             + +TTQ            SR  H+  +   + T        DWSP DD IE ++P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQ 348
            E  ++R +V+ YI   LYG TT R  +RLPVF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

The following BLAST results are available for this feature:
BLAST of CmoCh04G020900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Z36L3_MOUSE2.1e-0747.17Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1[more]
TISD_MOUSE2.8e-0730.97Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2[more]
TISD_HUMAN3.7e-0727.22Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3[more]
TIS11_DROME4.8e-0744.44Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2[more]
TISB_HUMAN6.3e-0739.39Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1[more]
BLAST of CmoCh04G020900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K529_CUCSA6.8e-7764.91Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1[more]
A5B230_VITVI7.1e-3436.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1[more]
K7KPS7_SOYBN7.6e-2830.70Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1[more]
A0A072UPE4_MEDTR1.3e-2735.83Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1[more]
A0A0V0IC54_SOLCH2.2e-2733.52Putative zinc finger protein 36, C3H1 type-like 1-like OS=Solanum chacoense PE=4... [more]
BLAST of CmoCh04G020900 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32360.14.3e-0641.27 Zinc finger (CCCH-type) family protein[more]
AT1G66810.19.6e-0650.00 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CmoCh04G020900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462413|ref|XP_004148935.1|2.6e-7764.79PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus][more]
gi|700188781|gb|KGN44014.1|9.8e-7764.91hypothetical protein Csa_7G103290 [Cucumis sativus][more]
gi|502142052|ref|XP_004504769.1|4.7e-4739.12PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum][more]
gi|720016204|ref|XP_010261083.1|9.9e-3736.00PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera][more]
gi|731397458|ref|XP_010652879.1|6.0e-3436.65PREDICTED: tristetraprolin [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020900.1CmoCh04G020900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 190..225
score: 7.7
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 195..219
score: 2.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 192..219
score: 2.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 192..220
score: 14
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 192..224
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020900CmaCh00G001400Cucurbita maxima (Rimu)cmacmoB014
CmoCh04G020900Cp4.1LG01g17490Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020900Carg27581Silver-seed gourdcarcmoB1127
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020900Cucurbita maxima (Rimu)cmacmoB741
CmoCh04G020900Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020900Cucurbita pepo (Zucchini)cmocpeB682