CmaCh00G001400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionZinc finger C-x8-C-x5-C-x3-H type protein
LocationCma_Chr00 : 7831506 .. 7833702 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCACTCTTAAGCTCCGCATCCATCGTGATTTTCCGTCCTCTTGCCCTACACGACGCCAAACACGAAATGTTAACGCTAATTCCTCTCTCACAATCCAACCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTGATTTTCCAGGTACGTCTTCTACTCATTTCCTTGCACTCAAACCACAGTCTTCCGGCTGCGTTGTGTTCGATCTCGAACAATTTCAAATCGATCTTCAGGATATTTTGTATTCTGTCGGTGTGACTTCGAATTGAAGTTGAGCCTTCACGCTTTCCATTTTGGACTCCGCACCGATCTGCACTTGCGTTTTAACTGACGTCTTTTTCACAATGTTGTGTGCATCTTAATTTGCGTTTTGAATGGAGCCCTAACATGTTTGATCCTATCATTTTGAACGAATTATTTGCTCTGCAAATGACTGTTAGATCTTCTCTGTTCTCTGCTTTAGCATCTGAATCTTTTGTTCGTATTCATCATCCGCCGTTTCTGTAAGTTTAATTCACCGATTCCCTTGGAGAGTACTGCATCAGGATTGAACAAATCTCTGTTTCGAAATATTAGGGACATGAGCCTGGACATCAATTCTACGTCGCCAATGAACACTTCAAAATGCTGATAGATCTTCTTTTCTCCGTGCATAAAATTGCCTTTGATATCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAACCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATGTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGCAATGATACGATCTGAATAGCTTCAATTTATATGCTGAGTAGGCATACTTTTTTTCAAACAATTTTCTCAATCAGACGCGTTAAATTTTTGGGGAAAAAATTGATCTGTATTAAATGGAGTTGGGTTTTGTAAATTGTATGTGCTATATGCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGGTACCATCGACATGTGATGATTAAATATAGTGCAAAATTTGTTGGAATAAAAAAGTTAGATTTTGCATATTTCTTTGCTACTACAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTTGGAAATGCATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCATGTGCATACTTTGATGTGTACGTGTTCCTCTAAGGAAAAGGCTGTGTTCTACTTAGAGTTGGAGTGTATTACCTATTAAGCCAAGAATTCAATTCTGAC

mRNA sequence

CTCCACTCTTAAGCTCCGCATCCATCGTGATTTTCCGTCCTCTTGCCCTACACGACGCCAAACACGAAATGTTAACGCTAATTCCTCTCTCACAATCCAACCCTCTCAACTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTGATTTTCCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAACCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATGTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTTGGAAATGCATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCATGTGCATACTTTGATGTGTACGTGTTCCTCTAAGGAAAAGGCTGTGTTCTACTTAGAGTTGGAGTGTATTACCTATTAAGCCAAGAATTCAATTCTGAC

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAACCGTCAATCATCAAAGGCCTGAACCCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCCGTGGTAGGAAAATTACCATCCGCCGGCGACACATGTTCTACTCCGGTTGCGGACGTCATCAATGCCAGCTACCGGTCCTCTATTATCAACCACTTCGCCAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCACCACTTTCGGCTCTAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACACTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGCTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCAGTTCATTTACCTGTTAAAACCAAACCTAAGTTTGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCCAACTCACTCTATGCCACCTTCAAAACTGAACTTAACAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGACGATGATGGCATCGAAGTTGTTGTCCCCGAAACGAAGTCCACAAGGGGAGATGTAGACCAACACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCGACTAGAAGAATAG

Protein sequence

MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVPETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE
Homology
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BLAST of CmaCh00G001400 vs. Swiss-Prot
Match: Z36L3_MOUSE (Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPVKTKP 234
           SG  S  +  +Y+T++CR +E+SG C++GHKCQFAHG  ELR +  H   KT+P
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTEP 165

[Close]
BLAST of CmaCh00G001400 vs. Swiss-Prot
Match: TISD_MOUSE (Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-08
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLTH 242
           G GS ++  +Y+T++CR +E+SG+C++G KCQFAHG  ELR +    K K +    + T 
Sbjct: 146 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTI 205

Query: 243 G 244
           G
Sbjct: 206 G 206

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BLAST of CmaCh00G001400 vs. Swiss-Prot
Match: TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 9.5e-08
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 188 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKF 236
           ++ ++Y+T++CR +E++G C++G KCQFAHG  ELR VH   K K ++
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEY 178

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BLAST of CmaCh00G001400 vs. Swiss-Prot
Match: TISB_MOUSE (Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 228
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 VKTKPKFGEPYLTHG 244
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of CmaCh00G001400 vs. Swiss-Prot
Match: TISB_RAT (Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLP 228
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +   
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 VKTKPKFGEPYLTHG 244
            K K +    + T G
Sbjct: 154 PKYKTELCRTFHTIG 165

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BLAST of CmaCh00G001400 vs. TrEMBL
Match: A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.0e-80
Identity = 171/259 (66.02%), Postives = 201/259 (77.61%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 284 ------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTE 343
                 GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

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BLAST of CmaCh00G001400 vs. TrEMBL
Match: A5B230_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.2e-34
Identity = 106/280 (37.86%), Postives = 153/280 (54.64%), Query Frame = 1 

Query: 82  SAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVR 141
           +AGD  +TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFG-------EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIAATTQSNSLYATFKTELNRRGHSINSIHNLNT--------DWSPDDDGIEVVVP--- 321
             + +TTQ            +R  H+      + T        DWSP DDGIEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAAXTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
            E  ++R +V+ +I   LYG TT R  +RLPVF ++C SR
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSR 296

[Close]
BLAST of CmaCh00G001400 vs. TrEMBL
Match: K7L5F5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.2e-29
Identity = 113/341 (33.14%), Postives = 173/341 (50.73%), Query Frame = 1 

Query: 7   KRSSKPSIIKG--LNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRST 66
           +RS+   ++K   LN  V P++I  +        G Y Q T   +      +AE  D  +
Sbjct: 2   ERSNSKKVLKSRLLNENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPFAENVDAGS 61

Query: 67  PIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGS 126
           P+  Y  + SP+ GK  +A +   +P      A      + +  +S+ GSSSFGSR G  
Sbjct: 62  PLTRYLFAGSPLSGKFAAASEAFVSPKFGARTAK----ALQYCGTSSGGSSSFGSR-GRL 121

Query: 127 SLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSG- 186
           + SPLS+LEN+E  P+ SP +Y TP    ++VIVMD IL+  V GG K+ +S+  SG G 
Sbjct: 122 TPSPLSSLENMEFAPLLSPPVYRTPSTGDDDVIVMDAILVRPVSGG-KSGRSSSSSGRGS 181

Query: 187 --GGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLT 246
               SS  KN ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +      +
Sbjct: 182 FSSSSSTGKNVFKTEICKAREESGNSRYNSKSQYGRVPEEYRSIILARKRKSEEETSSSS 241

Query: 247 HGLKSRNNHSLTGI---AATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEV 306
            G  S  +   + +    A  +S+ +  T     +   H+  +  N   DWSP DD  EV
Sbjct: 242 VGAGSSMHDPSSHVHQHYAAAESDPVVVT-SQPTSAEPHNALTDSNAFNDWSPLDDITEV 301

Query: 307 VVP--ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLC 338
           V+P  +   +R +VD +I  + +G T    KKRLPVF  +C
Sbjct: 302 VLPASDKAPSREEVDAYISGIQHGRT---GKKRLPVFEAIC 325

[Close]
BLAST of CmaCh00G001400 vs. TrEMBL
Match: K7KPS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.5e-28
Identity = 112/355 (31.55%), Postives = 168/355 (47.32%), Query Frame = 1 

Query: 1   MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60
           ME    K+ S  S +   N  V P++I  +        G Y Q T   +      YAE  
Sbjct: 1   MERSNSKKKSLKSRLS--NENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPYAENI 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120
           D  +P+  +  + SP+ GK+   G+   +P      A      + +  +S+ GSSSF SR
Sbjct: 61  DAGSPLTRHLFAGSPLSGKVAGDGEAFISPKFGARTAK----ALQYCGTSSGGSSSFCSR 120

Query: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
            G  + SPLS+LEN+E  P+RSP +Y TP    ++VIVMD IL+  V GG     S+  S
Sbjct: 121 -GWLTSSPLSSLENMEIAPLRSPPVYRTPSTGDDDVIVMDAILVRPVSGGTSGRSSSSSS 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPK------ 240
                SS +K+ ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +      
Sbjct: 181 RGSSSSSTAKSVFKTEICKAREESGNSRYNSKSQYGRVPEEDRSIILARKRKSEAETSSS 240

Query: 241 -FGEPYLTHGLKS---------RNNHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHN 300
             G    THG  S          ++ +++    T+  +    T     +   H   +  N
Sbjct: 241 SVGAESSTHGPSSDVHQQYAAAESDPAVSTSQPTSAESDHEVTTSEPTSAETHDTLTDSN 300

Query: 301 LNTDWSPDDDGIEVVV--PETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLC 338
              DWSP DDGIEVV+   +   +R  VD HI  + +G T    K+RL VF  +C
Sbjct: 301 TFNDWSPLDDGIEVVLLGSDKAPSREQVDVHISGIQHGWT---GKRRLLVFEAIC 338

[Close]
BLAST of CmaCh00G001400 vs. TrEMBL
Match: M5XKF2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024712mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-26
Identity = 101/241 (41.91%), Postives = 130/241 (53.94%), Query Frame = 1 

Query: 120 RRGGSSLSPLSALENLETTPVRSPQ--IYGTPLK--VHEEVIVMDEILISSVHGGAKTLK 179
           RR  S LSPLS LENL     RSP   +Y TP++    EEV+VMD +L++   GG ++ +
Sbjct: 19  RRHLSPLSPLSPLENLME---RSPPSIVYRTPVRGVQREEVLVMDGVLVT---GGGRSSR 78

Query: 180 SALDSGSGGGSSLSKNQ--YRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKP 239
           SA D  S   SS S     Y+TD+CRSWEDSGSCR+  K Q A GKE+ RP   PVK K 
Sbjct: 79  SASDLSSSSSSSDSSGNILYKTDLCRSWEDSGSCRYTSKGQIAPGKEKPRPTRFPVKNKS 138

Query: 240 K-------FGEPYLTHGLKSRNNHSLTGI------AATTQSNSLYATFKTELNRRGHSIN 299
           +        G    T   KS   H +  I      +ATTQ+ S  A  K  +     +I+
Sbjct: 139 ETLMCKSYTGTRLCTPSPKSNFVHPVMAISVTEAASATTQAASSTAP-KATMKTPTTTIS 198

Query: 300 SIHNLNTDWSPDDDGIEVVVP----ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQL 338
            +     DWSP DDGIEVV+P     T  +R D+  +I +VL G TT R    LPVF ++
Sbjct: 199 FL-----DWSPQDDGIEVVLPYSSTGTPPSREDISSYITDVLCGPTTRRI---LPVFAEI 244

[Close]
BLAST of CmaCh00G001400 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1 

Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYLT-----HGLKSRN 253
           +T++C  W+++G+C +G  CQFAHG +ELRPV    + K +     +T     +G +   
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293

[Close]
BLAST of CmaCh00G001400 vs. TAIR10
Match: AT1G68200.1 (AT1G68200.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPV 226
           +T++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV 255

[Close]
BLAST of CmaCh00G001400 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-06
Identity = 26/63 (41.27%), Postives = 32/63 (50.79%), Query Frame = 1 

Query: 166 SVHGGAKTLKSALDSGSGGGSS------LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGK 223
           SV GG  +    +  G GG  S      L  + ++T IC  WE +G C FG KC FAHG 
Sbjct: 228 SVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGA 287

[Close]
BLAST of CmaCh00G001400 vs. NCBI nr
Match: gi|449462413|ref|XP_004148935.1| (PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 4.9e-81
Identity = 172/261 (65.90%), Postives = 203/261 (77.78%), Query Frame = 1 

Query: 102 SIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDE 161
           +I+NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD 
Sbjct: 57  NIMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDG 116

Query: 162 ILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE 221
           ILISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+
Sbjct: 117 ILISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKED 176

Query: 222 LRPVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR-- 281
           LRP  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R  
Sbjct: 177 LRPGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGL 236

Query: 282 --------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGST 341
                   GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGST
Sbjct: 237 TPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGST 296

Query: 342 TERAKKRLPVFVQLCSSRLEE 344
           TER KKRLPVFVQ+CS  L+E
Sbjct: 297 TERTKKRLPVFVQICSEELQE 311

[Close]
BLAST of CmaCh00G001400 vs. NCBI nr
Match: gi|700188781|gb|KGN44014.1| (hypothetical protein Csa_7G103290 [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.4e-80
Identity = 171/259 (66.02%), Postives = 201/259 (77.61%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSA+ENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPVKTKPKFGEPYLTHGLKSRNNHSLTGIAATT----QSNSLYATFKTELNRR---- 283
           P  LPV+TK KF E   T+G K RNNHSLTGIAATT     SN +    KTEL++R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 284 ------GHSINSIHNLNT----DWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTE 343
                 GH+ N+   ++T    +WSP+DDGI++ VP T+ST R DV+QHI EVLYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

[Close]
BLAST of CmaCh00G001400 vs. NCBI nr
Match: gi|502142052|ref|XP_004504769.1| (PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum])

HSP 1 Score: 198.4 bits (503), Expect = 2.1e-47
Identity = 130/335 (38.81%), Postives = 197/335 (58.81%), Query Frame = 1 

Query: 18  LNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVV 77
           LN  V P+++++D+       G Y Q T   +      YAE  D  +P+  YF + SP+ 
Sbjct: 20  LNENVSPLQVELDDK-----RGRYLQSTT--MSPGFQPYAENIDTGSPLARYFFAGSPIS 79

Query: 78  GKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLET 137
           GK   + ++ ++P+    ++ YRS+ +  + +++SG+SSFGSR G  SLSPLS++EN+E 
Sbjct: 80  GK---SSESFTSPIFG--SSKYRSARMQQYCATSSGNSSFGSR-GRLSLSPLSSIENMEI 139

Query: 138 TPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKTLKSALDSGSGGGSSLSKNQYRT 197
            P+ SP +YGTP+KV EEVIVMD+I +  + GG   ++  S+   GSG  SS SK+ Y+T
Sbjct: 140 KPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRSSSSSSSRGSGSSSSSSKSVYKT 199

Query: 198 DICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL-------THGLKSRN 257
           DICR+WE+SG+CR+  KCQFAHG+EEL P  L +K+K +     L       T+G  SR 
Sbjct: 200 DICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKSEAQTSKLSIRLGQGTYGPNSRV 259

Query: 258 NHSLTGIAATTQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVP---ETKS 317
            H    +  +  + +   T +        S ++  N+  DWSP DDGI+VV+P   +   
Sbjct: 260 VHEHPAVTESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPNGSDKVP 319

Query: 318 TRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
           +R +VD +I  +L   TT   K+RLPVFV +C  +
Sbjct: 320 SREEVDAYIFGLLNEPTT---KRRLPVFVAICEGQ 337

[Close]
BLAST of CmaCh00G001400 vs. NCBI nr
Match: gi|720016204|ref|XP_010261083.1| (PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera])

HSP 1 Score: 161.8 bits (408), Expect = 2.2e-36
Identity = 120/322 (37.27%), Postives = 168/322 (52.17%), Query Frame = 1 

Query: 25  IKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSAG 84
           I  Q D+ L++G  G Y   +++  P I +      D  + ++ Y R+    +       
Sbjct: 21  ISPQSDDQLILGRRGRYGFTSSAFDPQIHNPL----DVDSTLIRYSRATGASL------- 80

Query: 85  DTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVRSPQ 144
               +P ADV  +    S    F       S+   R  GSS SPLS++ENLET P +SP 
Sbjct: 81  ----SPSADVFPSQIIDS--TKFHPLLLHRSNISPR--GSSPSPLSSIENLETPPSKSPP 140

Query: 145 IYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDS 204
           ++ TP+KV E+V+VMD IL+ SV GG    +S  DSGS   SS   + Y+T+ICR+WED+
Sbjct: 141 VFATPVKVEEDVLVMDGILVGSVPGG--RTRSGPDSGS---SSSGNSLYKTEICRAWEDT 200

Query: 205 GSCRFGHKCQFAHGKEELRPVHLPVKTKPK------FGEPYLTHGLKSRNNHSLTGIAAT 264
           G+CR+G KCQFAHGKEELRP  +  K K +      F      +G K R  H +   + +
Sbjct: 201 GNCRYGSKCQFAHGKEELRPTRVSSKNKSEGQLCKSFATGTCAYGSKCRFIHHMAVSSPS 260

Query: 265 TQSNSLYATFKTELNRRGHSINSIHNLNTDWSPDDDGIEVVVPETKS---TRGDVDQHIL 324
             + S  AT              I     DWSP DDGIEV +P +     TR DV+ +I 
Sbjct: 261 RTATSAGAT------------TMIKPEQDDWSPADDGIEVRLPSSTEHCPTREDVNLYIH 303

Query: 325 EVLYGSTTERAKKRLPVFVQLC 338
           +VLYG +    +KRLPVF ++C
Sbjct: 321 DVLYGPS---RRKRLPVFAEIC 303

[Close]
BLAST of CmaCh00G001400 vs. NCBI nr
Match: gi|731397458|ref|XP_010652879.1| (PREDICTED: tristetraprolin [Vitis vinifera])

HSP 1 Score: 153.3 bits (386), Expect = 7.7e-34
Identity = 106/280 (37.86%), Postives = 154/280 (55.00%), Query Frame = 1 

Query: 82  SAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSALENLETTPVR 141
           +AGD  +TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALDSGSGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S     S   ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFG-------EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+              +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIAATTQSNSLYATFKTELNRRGHSINSIHNLNT--------DWSPDDDGIEVVVP--- 321
             + +TTQ            +R  H+  +   + T        DWSP DDGIEVV+P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSR 341
            E  ++R +V+ +I   LYG TT R  +RLPVF ++C SR
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSR 296

The following BLAST results are available for this feature:
BLAST of CmaCh00G001400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Z36L3_MOUSE1.9e-0850.00Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1[more]
TISD_MOUSE4.3e-0842.62Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2[more]
TIS11_DROME9.5e-0845.83Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2[more]
TISB_MOUSE2.1e-0737.33Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=2 SV=1[more]
TISB_RAT2.1e-0737.33Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=2 SV... [more]
BLAST of CmaCh00G001400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K529_CUCSA1.0e-8066.02Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1[more]
A5B230_VITVI9.2e-3437.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1[more]
K7L5F5_SOYBN5.2e-2933.14Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1[more]
K7KPS7_SOYBN7.5e-2831.55Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1[more]
M5XKF2_PRUPE2.4e-2641.91Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024712mg PE=4 S... [more]
BLAST of CmaCh00G001400 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G66810.11.1e-0636.92 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G68200.13.2e-0653.13 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G32360.17.2e-0641.27 Zinc finger (CCCH-type) family protein[more]
BLAST of CmaCh00G001400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462413|ref|XP_004148935.1|4.9e-8165.90PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus][more]
gi|700188781|gb|KGN44014.1|1.4e-8066.02hypothetical protein Csa_7G103290 [Cucumis sativus][more]
gi|502142052|ref|XP_004504769.1|2.1e-4738.81PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum][more]
gi|720016204|ref|XP_010261083.1|2.2e-3637.27PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera][more]
gi|731397458|ref|XP_010652879.1|7.7e-3437.86PREDICTED: tristetraprolin [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001400.1CmaCh00G001400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 190..225
score: 2.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 193..219
score: 3.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 192..219
score: 5.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 192..220
score: 15
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 192..224
score: 5.8
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 183..234
score: 6.8E-12coord: 251..279
score: 6.8
NoneNo IPR availablePANTHERPTHR12547:SF72ZINC FINGER PROTEIN 36, C3H1 TYPE-LIKE 2coord: 251..279
score: 6.8E-12coord: 183..234
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G001400CmoCh04G020900Cucurbita moschata (Rifu)cmacmoB014
CmaCh00G001400Cp4.1LG01g17490Cucurbita pepo (Zucchini)cmacpeB000
CmaCh00G001400Carg27581Silver-seed gourdcarcmaB1157
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001400Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001400Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G001400Cucurbita moschata (Rifu)cmacmoB000