Carg27581 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27581
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger protein like
Location	Cucurbita_argyrosperma_scaffold_313 : 108430 .. 109765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCAGCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGATCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGTAATGGTACGATCTGTATAACTTCAATTTATATGCGGAGTATGCATACTTTTCTTCAAACAATTTTCTCAATCAGACGCGTTAAATTTTTGGGAAAAACATTTGATCTGTAATAAATGGAGTTGGGTTTTGTAATTTGTATGTGCTATTTGCAGTTTGCACATGGAAAGGAGGAGATTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACCATTGATGATTAAATATAGTGCTAAATTTGTTGGAATAATAAAAGTTATATTTTGCATATTTCTTAGTTGGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCACTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGAAGGCCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATCGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGGTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAACACATA

mRNA sequence

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCAGCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGATCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGATTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGTTGGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCACTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGAAGGCCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATCGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGGTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAACACATA

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAATTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCAGCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGATCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGATTCCGGAAGCGGCGGCGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGATTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGTTGGGTGAACCATATTTGACGCATGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTGCAACAACGCAATCGAACTCACTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGAAGGCCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATCGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGGTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAG

Protein sequence

MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYLTHGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAIVPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE

Homology

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BLAST of Carg27581 vs. NCBI nr
Match: XP_022930093.1 (uncharacterized protein LOC111436579 isoform X1 [Cucurbita moschata] >XP_022930094.1 uncharacterized protein LOC111436579 isoform X1 [Cucurbita moschata])

HSP 1 Score: 644.0 bits (1660), Expect = 2.8e-181
Identity = 330/344 (95.93%), Postives = 332/344 (96.51%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           MEDRQGKRSSKAS IKGLNATVRPIKIQMDNHLVIGGTGHY QETNSKIPTILDRYAEKH
Sbjct: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
           RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSAL+S
Sbjct: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALES 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYL 240
           G     SLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE+RPVHLPLKTKPK GEPYL
Sbjct: 181 GXXXXXSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYL 240

Query: 241 THGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAI 300
           THGLKSRNNHSLTGIA TTQSNS DTTFKTELSRR GHSINSIHNLNTDWSPEDDSIEAI
Sbjct: 241 THGLKSRNNHSLTGIATTTQSNSFDTTFKTELSRR-GHSINSIHNLNTDWSPEDDSIEAI 300

Query: 301 VPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE 345
           VPETKSTRGDVDQYILE LYGSTTERAKKRLPVFVQLCSSQQEE
Sbjct: 301 VPETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQEE 343

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BLAST of Carg27581 vs. NCBI nr
Match: XP_023536031.1 (uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536040.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 644.0 bits (1660), Expect = 2.8e-181
Identity = 329/344 (95.64%), Postives = 334/344 (97.09%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           MEDRQGKRSSKA+IIKGLNATVRPIKIQMDNHLVIGGTGHY QETNSKIPTILDRYAEKH
Sbjct: 1   MEDRQGKRSSKAAIIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           +RSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR
Sbjct: 61  ERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
           RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS
Sbjct: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYL 240
           GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE+RPVHLPLKTKPK GEPYL
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYL 240

Query: 241 THGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAI 300
           THGLKSRNNHSLTGIAATTQSNSLD TFKTELSRR GHSINSIHNLNTDWSPEDD IE +
Sbjct: 241 THGLKSRNNHSLTGIAATTQSNSLDITFKTELSRR-GHSINSIHNLNTDWSPEDDDIEVV 300

Query: 301 VPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE 345
           VPETKSTRGDVDQ+I E LYGSTTER KKRL VFVQLCSSQQEE
Sbjct: 301 VPETKSTRGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQEE 343

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BLAST of Carg27581 vs. NCBI nr
Match: XP_022930016.1 (uncharacterized protein LOC111436459 isoform X1 [Cucurbita moschata] >XP_022930017.1 uncharacterized protein LOC111436459 isoform X1 [Cucurbita moschata])

HSP 1 Score: 642.1 bits (1655), Expect = 1.1e-180
Identity = 329/344 (95.64%), Postives = 331/344 (96.22%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           MEDRQGKRSSKAS IKGLNATVRPIKIQMDNHLVIGGTGHY QETNSKIPTILDRYAEKH
Sbjct: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
           RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSAL+S
Sbjct: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALES 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYL 240
           G     SLSKNQYR DICRSWEDSGSCRFGHKCQFAHGKEE+RPVHLPLKTKPK GEPYL
Sbjct: 181 GXXXXXSLSKNQYRADICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYL 240

Query: 241 THGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAI 300
           THGLKSRNNHSLTGIA TTQSNS DTTFKTELSRR GHSINSIHNLNTDWSPEDDSIEAI
Sbjct: 241 THGLKSRNNHSLTGIATTTQSNSFDTTFKTELSRR-GHSINSIHNLNTDWSPEDDSIEAI 300

Query: 301 VPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE 345
           VPETKSTRGDVDQYILE LYGSTTERAKKRLPVFVQLCSSQQEE
Sbjct: 301 VPETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQEE 343

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BLAST of Carg27581 vs. NCBI nr
Match: XP_022973998.1 (uncharacterized protein LOC111472616 isoform X1 [Cucurbita maxima] >XP_022973999.1 uncharacterized protein LOC111472616 isoform X1 [Cucurbita maxima])

HSP 1 Score: 637.9 bits (1644), Expect = 2.0e-179
Identity = 324/344 (94.19%), Postives = 333/344 (96.80%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           MEDRQGKRSSKASIIKGLN TVRPIKIQMDNHLVIGGTGHY QETNSKIPTILDRYAEKH
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           DRSTPIVSYFRSRSPVVGKLPS GDTFSTPVADVINA+YRSSIINHFASSTSGSSSFGSR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
           RGGSSLSPLSA+ENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYL 240
           GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE+RPVHLP+KTKPK GEPYL
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 THGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAI 300
           THGLKSRNNHSLTGIAATTQSNSL  TFKTEL+RR GHSINSIHNLNTDWSP+DD IE +
Sbjct: 241 THGLKSRNNHSLTGIAATTQSNSLYATFKTELNRR-GHSINSIHNLNTDWSPDDDGIEVV 300

Query: 301 VPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE 345
           VPETKSTRGDVDQ+ILE LYGSTTERAKKRLPVFVQLCSS+ EE
Sbjct: 301 VPETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

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BLAST of Carg27581 vs. NCBI nr
Match: XP_022974010.1 (uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima] >XP_022974011.1 uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima])

HSP 1 Score: 632.9 bits (1631), Expect = 6.5e-178
Identity = 322/344 (93.60%), Postives = 331/344 (96.22%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           MEDRQGKRSSK SIIKGLN TVRPIKIQMDNHLVIGGTGHY QETNSKIPTILDRYAEKH
Sbjct: 1   MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           DRSTPIVSYFRSRSPVVGKLPS GDT STPVADVINA+YRSSIINHFASSTSGSSSFGSR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180
           RGGSSLSPLSA+ENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYL 240
           GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE+RPVHLP+KTKPK GEPYL
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 THGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAI 300
           THGLKSRNNHSLTGIAATTQSNSL  TFKTEL+RR GHSINSIHNLNTDWSP+DD IE +
Sbjct: 241 THGLKSRNNHSLTGIAATTQSNSLYATFKTELNRR-GHSINSIHNLNTDWSPDDDGIEVV 300

Query: 301 VPETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQQEE 345
           VPETKSTRGDVDQ+ILE LYGSTTERAKKRLPVFVQLCSS+ EE
Sbjct: 301 VPETKSTRGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

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BLAST of Carg27581 vs. TAIR10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 49.7 bits (117), Expect = 4.2e-06
Identity = 16/32 (50.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEEIRPV 226
           +T++C  W+++G+C +G  CQFAHG +E+RPV
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPV 265

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BLAST of Carg27581 vs. TAIR10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-06
Identity = 16/32 (50.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEEIRPV 226
           +T++C  W+++G+C +G  CQFAHG +E+RPV
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV 255

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BLAST of Carg27581 vs. TAIR10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04
Identity = 17/35 (48.57%), Postives = 22/35 (62.86%), Query Frame = 0


Query: 188 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEI 223
           L  + ++T IC  WE +G C FG KC FAHG  E+
Sbjct: 256 LKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

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BLAST of Carg27581 vs. Swiss-Prot
Match: sp|P23949|TISD_MOUSE (mRNA decay activator protein ZFP36L2 OS=Mus musculus OX=10090 GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-07
Identity = 21/41 (51.22%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIR 224
           G GS ++  +Y+T++CR +E+SG+C++G KCQFAHG  E+R
Sbjct: 146 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 186

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BLAST of Carg27581 vs. Swiss-Prot
Match: sp|Q5ISE2|Z36L3_MOUSE (mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-07
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIR 224
           SG  S  +  +Y+T++CR +E+SG C++GHKCQFAHG  E+R
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELR 153

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BLAST of Carg27581 vs. Swiss-Prot
Match: sp|P47980|TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 6.3e-07
Identity = 19/39 (48.72%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 188 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVH 227
           ++ ++Y+T++CR +E++G C++G KCQFAHG  E+R VH
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVH 169

[Close]

BLAST of Carg27581 vs. Swiss-Prot
Match: sp|P23950|TISB_MOUSE (mRNA decay activator protein ZFP36L1 OS=Mus musculus OX=10090 GN=Zfp36l1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-06
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIR 224
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  E+R
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

[Close]

BLAST of Carg27581 vs. Swiss-Prot
Match: sp|P17431|TISB_RAT (mRNA decay activator protein ZFP36L1 OS=Rattus norvegicus OX=10116 GN=Zfp36l1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-06
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 169 GGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIR 224
           GG + L +    GSG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  E+R
Sbjct: 94  GGERLLPTQKQPGSG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELR 145

[Close]

BLAST of Carg27581 vs. TrEMBL
Match: tr|A0A0A0K529|A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.3e-78
Identity = 169/259 (65.25%), Postives = 200/259 (77.22%), Query Frame = 0


Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALDSGSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIR 223
           ISS+HG AKT++S LDSGSGGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE++R
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPLKTKPKLGEPYLTHGLKSRNNHSLTGIAATT----QSNSLDTTFKTELSRR---- 283
           P  LP++TK K  E   T+G K RNNHSLTGIAATT     SN +DT  KTELS+R    
Sbjct: 121 PGRLPVRTKTKFSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLTP 180

Query: 284 -----EGHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILEGLYGSTTE 343
                +GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I E LYGSTTE
Sbjct: 181 TSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTE 240

Query: 344 RAKKRLPVFVQLCSSQQEE 345
           R KKRLPVFVQ+CS + +E
Sbjct: 241 RTKKRLPVFVQICSEELQE 253

[Close]

BLAST of Carg27581 vs. TrEMBL
Match: tr|A0A2R6Q6E1|A0A2R6Q6E1_ACTCH (Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21209 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 147/369 (39.84%), Postives = 186/369 (50.41%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           ME   G  SS+ S +K  N  V PI  Q DNH    G G       S  PT LD Y+E  
Sbjct: 1   MEGPYGNNSSRVSKLKAFNGNVSPINSQRDNHQFFIGGGRLHHPPKS--PT-LDPYSENL 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPV-ADVINANYRSSIINHFASSTSGSSSFGS 120
           D  + ++ Y RS SP     P  GDTF  PV   +I   + S   +    S    SS+GS
Sbjct: 61  D--SALIRYLRSGSPA---SPVAGDTFKAPVDGAMIGHQFLSGNSSGSGGSVGYLSSWGS 120

Query: 121 RRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALD 180
               +++SPLSA+ENLET P RSP ++ TP+KV E+V+VMD IL+ SV GG   L +  D
Sbjct: 121 ---SATVSPLSAVENLETPPARSPPVFKTPVKVEEDVLVMDGILVESVSGGRMRLSALSD 180

Query: 181 SG-SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLP---------- 240
           SG        SK+ Y+T+ICRSWEDS  CR+G KCQFAHGKEE+RP   P          
Sbjct: 181 SGXXXXXXXXSKSFYKTEICRSWEDSSHCRYGSKCQFAHGKEEVRPSRFPTXXXXXXXXX 240

Query: 241 ----------LKTKPKLGEPYLTHGLKSRNNHSLTG-IAATTQSNSLDTTFKTELSRREG 300
                                +T    S    S+T  I ATTQ+ SL ++ K E S   G
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXVTTSAISPTGPSVTATILATTQTISL-SSIKAENSSESG 300

Query: 301 HSINSIHNL---NTDWSPEDDSIEAIVPETKST-----RGDVDQYILEGLYGSTTERAKK 339
               S  N+   +TDW P DD IE  +P + ST     R  V+ YI   LYG +     K
Sbjct: 301 SKSTSSGNVTVASTDWCPLDDGIEVSLPFSASTNEIPSREAVNAYINSVLYGPS---RGK 354

[Close]

BLAST of Carg27581 vs. TrEMBL
Match: tr|A0A2R6RGQ9|A0A2R6RGQ9_ACTCH (Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06758 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 7.3e-45
Identity = 143/366 (39.07%), Postives = 181/366 (49.45%), Query Frame = 0


Query: 1   MEDRQGKRSSKASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKH 60
           ME   G  SS+ S +K  N  V  I  Q DNH +  G G       S  PT LD Y+E  
Sbjct: 1   MEGPYGNDSSRVSKLKAFNGNVLTINSQRDNHQLFIGGGRLHHPPKS--PT-LDPYSENL 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           D  + ++ Y RS SP     P  GD F  PVA    A      ++  +SS+ GS  + S 
Sbjct: 61  D--SALIRYLRSGSPA---SPVAGDAFKAPVA---GAMISHQFLSGNSSSSGGSVGYLSL 120

Query: 121 RGGSS-LSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALD 180
           RG SS +SPLSA+ENLET P RSP ++ TP+KV E+V+VMD IL+ SV GG   L ++ D
Sbjct: 121 RGSSSTVSPLSAVENLETPPSRSPSVFKTPVKVEEDVLVMDGILVESVSGGRMRLSASSD 180

Query: 181 SGSGGGSSL-SKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVH------------ 240
           S      SL SK+ Y+T+ICRSWEDS  CR+G KCQFAHGKEE+RP+             
Sbjct: 181 SSGSSSLSLGSKSFYKTEICRSWEDSCHCRYGSKCQFAHGKEEVRPLRXXXXXXXXXXXX 240

Query: 241 ---------LPLKTKPKLGEPYLTHGLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREG 300
                                 +T  +            ATTQ  S   T  +  S  + 
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXVMTAAISPTGPSVPAATLATTQIISPIETENSSESSSKS 300

Query: 301 HSINSIHNLNTDWSPEDDSIEAIVPETKST-----RGDVDQYILEGLYGSTTERAKKRLP 339
            S  +I     DWSP DD IE  +P + ST     R  VD YI   LYG +     KRLP
Sbjct: 301 MSSGNITIALADWSPLDDGIEVSLPSSASTNEVPSREAVDAYINSVLYGPS---RGKRLP 352

[Close]

BLAST of Carg27581 vs. TrEMBL
Match: tr|A0A1S2YH81|A0A1S2YH81_CICAR (zinc finger protein 36, C3H1 type-like 2 OS=Cicer arietinum OX=3827 GN=LOC101488659 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.8e-41
Identity = 124/341 (36.36%), Postives = 185/341 (54.25%), Query Frame = 0


Query: 12  ASIIKGLNATVRPIKIQMDNHLVIGGTGHYQQETNSKIPTILDRYAEKHDRSTPIVSYFR 71
           + + + LN  V P+++++D+       G Y Q T   +      YAE  D  +P+  YF 
Sbjct: 14  SKVRRTLNENVSPLQVELDDK-----RGRYLQSTT--MSPGFQPYAENIDTGSPLARYFF 73

Query: 72  SRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSA 131
           + SP+ GK     ++F++P+    ++ YRS+ +  + +++SG+SSFGS RG  SLSPLS+
Sbjct: 74  AGSPISGK---SSESFTSPIFG--SSKYRSARMQQYCATSSGNSSFGS-RGRLSLSPLSS 133

Query: 132 IENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKTLKSALDSGSGGGSSLS 191
           IEN+E  P+ SP +YGTP+KV EEVIVMD+I +  + GG                     
Sbjct: 134 IENMEIKPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGXXXXXXXXXXXXXXXXXX 193

Query: 192 KNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYLT----HGLK 251
              Y+TDICR+WE+SG+CR+  KCQFAHG+EE+ P  L +K+K +     L+     G  
Sbjct: 194 XXVYKTDICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKSEAQTSKLSIRLGQGTY 253

Query: 252 SRNNHSLTGIAATTQSNSLDTTFKTE--LSRREGHSINSIHNLNTDWSPEDDSIEAIVP- 311
             N+  +    A T+S    T   T    S     S ++  N+  DWSP DD I+ ++P 
Sbjct: 254 GPNSRVVHEHPAVTESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPN 313

Query: 312 --ETKSTRGDVDQYILEGLYGSTTERAKKRLPVFVQLCSSQ 342
             +   +R +VD YI   L   TT   K+RLPVFV +C  Q
Sbjct: 314 GSDKVPSREEVDAYIFGLLNEPTT---KRRLPVFVAICEGQ 337

[Close]

BLAST of Carg27581 vs. TrEMBL
Match: tr|A0A1U8AFE7|A0A1U8AFE7_NELNU (uncharacterized protein LOC104599994 OS=Nelumbo nucifera OX=4432 GN=LOC104599994 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 95/219 (43.38%), Postives = 122/219 (55.71%), Query Frame = 0


Query: 123 GSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDSGS 182
           GSS SPLS+IENLET P +SP ++ TP+KV E+V+VMD IL+ SV GG    +S  DSGS
Sbjct: 100 GSSPSPLSSIENLETPPSKSPPVFATPVKVEEDVLVMDGILVGSVPGG--RTRSGPDSGS 159

Query: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEEIRPVHLPLKTKPKLGEPYLTH 242
              SS   + Y+T+ICR+WED+G+CR+G KCQFAHGKEE+RP  +  K K    E  L  
Sbjct: 160 ---SSSGNSLYKTEICRAWEDTGNCRYGSKCQFAHGKEELRPTRVSSKNK---SEGQL-- 219

Query: 243 GLKSRNNHSLTGIAATTQSNSLDTTFKTELSRREGHSINSIHNLNTDWSPEDDSIEAIVP 302
             KS                              G +   I     DWSP DD IE  +P
Sbjct: 220 -CKSFAXXXXXXXXXXXXXXXXXXXXXXXXXXSAG-ATTMIKPEQDDWSPADDGIEVRLP 279

Query: 303 ETKS---TRGDVDQYILEGLYGSTTERAKKRLPVFVQLC 339
            +     TR DV+ YI + LYG +    +KRLPVF ++C
Sbjct: 280 SSTEHCPTREDVNLYIHDVLYGPS---RRKRLPVFAEIC 303

The following BLAST results are available for this feature:

BLAST of Carg27581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930093.1	2.8e-181	95.93	uncharacterized protein LOC111436579 isoform X1 [Cucurbita moschata] >XP_0229300...	[more]
XP_023536031.1	2.8e-181	95.64	uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022930016.1	1.1e-180	95.64	uncharacterized protein LOC111436459 isoform X1 [Cucurbita moschata] >XP_0229300...	[more]
XP_022973998.1	2.0e-179	94.19	uncharacterized protein LOC111472616 isoform X1 [Cucurbita maxima] >XP_022973999...	[more]
XP_022974010.1	6.5e-178	93.60	uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima] >XP_022974011...	[more]

BLAST of Carg27581 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66810.1	4.2e-06	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	5.5e-06	50.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G32360.1	2.3e-04	48.57	Zinc finger (CCCH-type) family protein	[more]

BLAST of Carg27581 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P23949\|TISD_MOUSE	2.2e-07	51.22	mRNA decay activator protein ZFP36L2 OS=Mus musculus OX=10090 GN=Zfp36l2 PE=1 SV...	[more]
sp\|Q5ISE2\|Z36L3_MOUSE	3.7e-07	52.38	mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV...	[more]
sp\|P47980\|TIS11_DROME	6.3e-07	48.72	Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2	[more]
sp\|P23950\|TISB_MOUSE	1.1e-06	41.82	mRNA decay activator protein ZFP36L1 OS=Mus musculus OX=10090 GN=Zfp36l1 PE=1 SV...	[more]
sp\|P17431\|TISB_RAT	1.1e-06	41.82	mRNA decay activator protein ZFP36L1 OS=Rattus norvegicus OX=10116 GN=Zfp36l1 PE...	[more]

BLAST of Carg27581 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K529\|A0A0A0K529_CUCSA	2.3e-78	65.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 PE=4 SV=1	[more]
tr\|A0A2R6Q6E1\|A0A2R6Q6E1_ACTCH	1.9e-45	39.84	Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A2R6RGQ9\|A0A2R6RGQ9_ACTCH	7.3e-45	39.07	Zinc finger protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A1S2YH81\|A0A1S2YH81_CICAR	3.8e-41	36.36	zinc finger protein 36, C3H1 type-like 2 OS=Cicer arietinum OX=3827 GN=LOC101488...	[more]
tr\|A0A1U8AFE7\|A0A1U8AFE7_NELNU	2.1e-31	43.38	uncharacterized protein LOC104599994 OS=Nelumbo nucifera OX=4432 GN=LOC104599994...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27581-RA	Carg27581-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 192..219 e-value: 5.1E-6 score: 36.0
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 193..219 e-value: 3.2E-7 score: 30.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 192..220 score: 15.422
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 186..225 e-value: 2.8E-16 score: 60.7
None	No IPR available	PANTHER	PTHR12547:SF99	SUBFAMILY NOT NAMED	coord: 109..339
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 109..339
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 192..223

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27581	CmaCh00G001400	Cucurbita maxima (Rimu)	carcmaB1157
Carg27581	CmoCh04G020900	Cucurbita moschata (Rifu)	carcmoB1127
Carg27581	Cp4.1LG01g17490	Cucurbita pepo (Zucchini)	carcpeB1166

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None