CmoCh04G021240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G021240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionZinc finger C-x8-C-x5-C-x3-H type protein
LocationCmo_Chr04 : 13959321 .. 13961390 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTGCCCTACACGACGCCATACAACAAATGTTGACGCTAATTTCTCTCTCGCAATCCAACCCTCTCACCTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTCATTTTCCAGGTACGTCTTCTACTCATTTCCTTGCACTCAAACCACACTCTTCCGGCTGCGTTCTGTTCCATCTCCAACAATTTCAAATCAATCTTCACGATATTTTGTATTCTGCCGGTGTGAGTTCCAATTGAAGTTGAGCCTTCACGTTTTCCATTTTGGACTCTGCACCGATCTGCACTTTCCTTTCAATTGACGACTTGTTCACAATGTGTGCATCTTAATTTGCGTTTTGAATGGAGCCCTAACATGTTTGATCCTATCACTTTGAATGAATTATTTTCTCTAGAAATGACTGGTTAGATCTTCTCTGTTCTCTGTTTTAGCCTCTGAATCTTATCATCCGCTATTTCTGTAAGTTTAATTCACCGATTCCTTGGAGAGTACTGCATCAGGATTGAACAAATCTCTGTTTCGAAATATTAGGGACATGAGCCTGGACATTAATTCTACGTCGCCAATGAACACTTCAAAATGCCGATAGATCTTCTTTTCTCTGTGCATAAAATCGCCTTTGATTAGTTTATCAATTTTCATCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGGTTAGTTATCTTGTCCCCACTGTAATGGTACGATCTGTATAACTTCAATTTATATGCGGAGTACGCATACTTTTCTTCAAACAATTTTCTCAATCAGGCGCGTTAAATTTTTGGGAAAAACATTGATCTGTAATAAATGGAGTTGGGTTTTGTAATTTGTATGTGCTATTTGCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTGTGATGATTAAATATAGTGCAAAATTTGTTGGAATAAAAAAAAATGTTAGATTTAGCATATTTCTTTGCTACTACAGTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAATACATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCAT

mRNA sequence

CTCTTGCCCTACACGACGCCATACAACAAATGTTGACGCTAATTTCTCTCTCGCAATCCAACCCTCTCACCTGCGGATTCTAATCTCTGAATCATTCCAACTCCGAATTTTCATTTTCCAGAAATTTCAGGTTCTTTTCCTGACTCATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAGGGAGGGCCAAAGTTTTTTCCATCTTAAACTCATTTCTCGAAAATACATACACCATTTTGTTTTGAAACACTCATACTTAGCTTATGCGCAT

Coding sequence (CDS)

ATGGAAGATCGCCAGGGCAAGAGGAGCTCCAAAGCGTCAACTATCAAAGGCCTAAACGCTACGGTTCGGCCGATCAAAATTCAGATGGACAATCACCTCGTAATCGGCGGGACCGGACACTATCACCAAGAAACAAACTCCAAAATTCCAACAATTCTTGATCGTTACGCCGAGAAGCATGACCGTTCAACACCGATCGTAAGTTACTTCCGCTCTCGATCTCCTGTGGTAGGAAAATTACCATCCGTCGGCGACACATTTTCTACTCCGGTTGCGGACGTCATCAATGCCAACTACCGCTCCTCTATTATCAACCACTTCGCTAGCAGCACTTCCGGAAGCAGTAGCTTCGGTTCTCGGAGAGGAGGATCGTCTTTGTCGCCACTTTCGGCTATAGAGAATTTGGAAACGACACCTGTAAGGTCTCCACAAATTTATGGGACTCCATTGAAGGTCCATGAGGAAGTGATAGTAATGGATGAAATTTTGATCAGTTCGGTCCATGGAGGAGCGAAGACATTGAAGTCTGCCTTAGAGTCCGGAGGCGGCGGTGGTTCATCGTTAAGCAAAAATCAATACAGAACGGACATTTGCCGCTCCTGGGAGGATTCTGGAAGCTGCCGCTTCGGCCACAAATGCCAGTTTGCACATGGAAAGGAGGAGCTTCGGCCTGTTCATTTACCTCTTAAAACCAAACCTAAGGTAAGGTACGATCGACCTTTTGGTGAACCATACTTGACGCACGGTCTCAAGTCCCGCAACAATCATTCACTAACAGGAATAGCTACAACAACGCAATCGAACTCATTCGATACCACCTTCAAAACTGAACTTAGCAGAAGAGGTCATTCAATAAATTCAATACACAACCTGAACACTGATTGGTCACCTGAAGATGATAGCATTGAAGCTATTGTCCCCGAAACAAAGTCCACAAGGGGAGATGTAGACCAATACATCCTTGAGGTTCTTTATGGTTCCACCACTGAGAGAGCCAAAAAGAGGCTTCCAGTTTTCGTTCAACTTTGCTCATCCCAACAAGAAGAATAG
Homology
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BLAST of CmoCh04G021240 vs. Swiss-Prot
Match: TISD_MOUSE (Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-08
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = 1 

Query: 122 GGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESG 181
           GGSS  P           ++ P        V +E    D     +       L    +  
Sbjct: 85  GGSSCGPAGGGGLASYGQLKEPSGGSGTALVTKESKFRDRSFSENGERSQHLLHLQQQQK 144

Query: 182 GGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTK 233
           GG GS ++  +Y+T++CR +E+SG+C++G KCQFAHG  ELR +  H   KT+
Sbjct: 145 GGSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTE 197

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BLAST of CmoCh04G021240 vs. Swiss-Prot
Match: Z36L3_MOUSE (Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-08
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTKP 234
           G  S  +  +Y+T++CR +E+SG C++GHKCQFAHG  ELR +  H   KT+P
Sbjct: 113 GSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELRTLSRHPKYKTEP 165

[Close]
BLAST of CmoCh04G021240 vs. Swiss-Prot
Match: TISD_HUMAN (Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-08
Identity = 44/158 (27.85%), Postives = 71/158 (44.94%), Query Frame = 1 

Query: 89  TPVADVINANYRSSIINHFASST------------SGSSSFGSRRGGSSLSPLSAIENLE 148
           TPVA   ++ +    +   ++S             S S  F     GSS    +A     
Sbjct: 38  TPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTS 97

Query: 149 TTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGGSSLSKNQYRTD 208
              ++ P   G    +++E    D     +       L    +  GGGGS ++  +Y+T+
Sbjct: 98  YGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTE 157

Query: 209 ICRSWEDSGSCRFGHKCQFAHGKEELRPV--HLPLKTK 233
           +CR +E+SG+C++G KCQFAHG  ELR +  H   KT+
Sbjct: 158 LCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTE 195

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BLAST of CmoCh04G021240 vs. Swiss-Prot
Match: TIS11_DROME (Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 188 LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPF 242
           ++ ++Y+T++CR +E++G C++G KCQFAHG  ELR VH     K K  Y R F
Sbjct: 131 MNTSRYKTELCRPFEEAGECKYGEKCQFAHGSHELRNVH--RHPKYKTEYCRTF 182

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BLAST of CmoCh04G021240 vs. Swiss-Prot
Match: TISB_HUMAN (Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 169 GGAKTLKSALESGGGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPV--H 228
           GG + L +  + GGG    ++ ++Y+T++CR +E++G+C++G KCQFAHG  ELR +  H
Sbjct: 94  GGERLLPTQKQPGGG---QVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRH 153

Query: 229 LPLKTK 233
              KT+
Sbjct: 154 PKYKTE 156

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BLAST of CmoCh04G021240 vs. TrEMBL
Match: A0A0A0K529_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 5.2e-77
Identity = 172/265 (64.91%), Postives = 201/265 (75.85%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALESGGGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTELS 283
           P  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTELS
Sbjct: 121 PGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELS 180

Query: 284 RR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILEVL 343
           +R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I EVL
Sbjct: 181 KRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVL 240

Query: 344 YGSTTERAKKRLPVFVQLCSSQQEE 350
           YGSTTER KKRLPVFVQ+CS + +E
Sbjct: 241 YGSTTERTKKRLPVFVQICSEELQE 253

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BLAST of CmoCh04G021240 vs. TrEMBL
Match: A5B230_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 104/281 (37.01%), Postives = 153/281 (54.45%), Query Frame = 1 

Query: 82  SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 141
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALESGGGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S         ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFG-EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+    + F       +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIATTTQSNSFDTTFKTELSRRGHSINSIHNLNT--------DWSPEDDSIEAIVP--- 321
             + +TTQ            SR  H+      + T        DWSP DD IE ++P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAAXTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQ 348
            E  ++R +V+ YI   LYG TT R  +RLPVF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

[Close]
BLAST of CmoCh04G021240 vs. TrEMBL
Match: K7KPS7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 110/355 (30.99%), Postives = 169/355 (47.61%), Query Frame = 1 

Query: 1   MEDRQGKRSSKASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60
           ME    K+ S  S +   N  V P++I  +        G Y Q T   +      YAE  
Sbjct: 1   MERSNSKKKSLKSRLS--NENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPYAENI 60

Query: 61  DRSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120
           D  +P+  +  + SP+ GK+   G+ F +P      A      + +  +S+ GSSSF SR
Sbjct: 61  DAGSPLTRHLFAGSPLSGKVAGDGEAFISPKFGARTAK----ALQYCGTSSGGSSSFCSR 120

Query: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALES 180
            G  + SPLS++EN+E  P+RSP +Y TP    ++VIVMD IL+  V GG     S+  S
Sbjct: 121 -GWLTSSPLSSLENMEIAPLRSPPVYRTPSTGDDDVIVMDAILVRPVSGGTSGRSSSSSS 180

Query: 181 GGGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVR-YDR 240
            G   SS +K+ ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +      
Sbjct: 181 RGSSSSSTAKSVFKTEICKAREESGNSRYNSKSQYGRVPEEDRSIILARKRKSEAETSSS 240

Query: 241 PFGEPYLTHGLKS---------RNNHSLTGIATTTQSNSFDTTFKTELSRRGHSINSIHN 300
             G    THG  S          ++ +++    T+  +  + T     S   H   +  N
Sbjct: 241 SVGAESSTHGPSSDVHQQYAAAESDPAVSTSQPTSAESDHEVTTSEPTSAETHDTLTDSN 300

Query: 301 LNTDWSPEDDSIEAIV--PETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLC 344
              DWSP DD IE ++   +   +R  VD +I  + +G T    K+RL VF  +C
Sbjct: 301 TFNDWSPLDDGIEVVLLGSDKAPSREQVDVHISGIQHGWT---GKRRLLVFEAIC 338

[Close]
BLAST of CmoCh04G021240 vs. TrEMBL
Match: K7L5F5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.9e-28
Identity = 111/344 (32.27%), Postives = 168/344 (48.84%), Query Frame = 1 

Query: 7   KRSSKASTIKG--LNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRST 66
           +RS+    +K   LN  V P++I  +        G Y Q T   +      +AE  D  +
Sbjct: 2   ERSNSKKVLKSRLLNENVPPLQIDSEER-----RGRYLQPT--AMSPRFQPFAENVDAGS 61

Query: 67  PIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGS 126
           P+  Y  + SP+ GK  +  + F +P      A      + +  +S+ GSSSFGSR G  
Sbjct: 62  PLTRYLFAGSPLSGKFAAASEAFVSPKFGARTAK----ALQYCGTSSGGSSSFGSR-GRL 121

Query: 127 SLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGG- 186
           + SPLS++EN+E  P+ SP +Y TP    ++VIVMD IL+  V GG K+ +S+  SG G 
Sbjct: 122 TPSPLSSLENMEFAPLLSPPVYRTPSTGDDDVIVMDAILVRPVSGG-KSGRSSSSSGRGS 181

Query: 187 --GGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPF 246
               SS  KN ++T+IC++ E+SG+ R+  K Q+    EE R + L  K K +   +   
Sbjct: 182 FSSSSSTGKNVFKTEICKAREESGNSRYNSKSQYGRVPEEYRSIILARKRKSE--EETSS 241

Query: 247 GEPYLTHGLKSRNNHSLTGIATTTQSNSFDTTFKTELSRRGHSINSIHNLNTDWSPEDDS 306
                   +   ++H     A         T+  T  S   H+  +  N   DWSP DD 
Sbjct: 242 SSVGAGSSMHDPSSHVHQHYAAAESDPVVVTSQPT--SAEPHNALTDSNAFNDWSPLDDI 301

Query: 307 IEAIVP--ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLC 344
            E ++P  +   +R +VD YI  + +G T    KKRLPVF  +C
Sbjct: 302 TEVVLPASDKAPSREEVDAYISGIQHGRT---GKKRLPVFEAIC 325

[Close]
BLAST of CmoCh04G021240 vs. TrEMBL
Match: A0A072UPE4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 86/240 (35.83%), Postives = 138/240 (57.50%), Query Frame = 1 

Query: 11  KASTIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRS---TPIV 70
           K S ++  N  V P+ +++D++      G  + ++ +  P      AE  D +   + + 
Sbjct: 3   KVSKLRTSNENVSPLMVELDDN-----RGLRYLQSTTVSPGFQPYAAENFDVTGSPSQLA 62

Query: 71  SYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFA--SSTSGSSSFGSRRGGSS 130
            YF + SPV  K    GD+F++P+    ++ YR +    ++  S++SG +S  S RG  S
Sbjct: 63  KYFYAVSPVSAKS---GDSFTSPIYG--SSKYRLAKTPPYSGTSNSSGGNSSFSSRGRLS 122

Query: 131 LSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGG 190
           LSPL++IENLE   + SP++Y TP+K  EEVIVMD+I + S+ GG     S+  S  G G
Sbjct: 123 LSPLASIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRSMSGGKNRRSSSSSSSSGRG 182

Query: 191 SSLSKNQ------YRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDR 240
           SS S +       ++ ++CR+WE+SG+CR+  KCQFAHG+EEL    L +K+K + +  R
Sbjct: 183 SSSSSSSSSKSVLFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSKSEAQMGR 232

[Close]
BLAST of CmoCh04G021240 vs. TAIR10
Match: AT1G32360.1 (AT1G32360.1 Zinc finger (CCCH-type) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-07
Identity = 27/63 (42.86%), Postives = 33/63 (52.38%), Query Frame = 1 

Query: 166 SVHGGAKTLKSALESGGGGGSS------LSKNQYRTDICRSWEDSGSCRFGHKCQFAHGK 223
           SV GG  +    +  GGGG  S      L  + ++T IC  WE +G C FG KC FAHG 
Sbjct: 228 SVGGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGA 287

[Close]
BLAST of CmoCh04G021240 vs. TAIR10
Match: AT1G66810.1 (AT1G66810.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-06
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPV 226
           +T++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPV 265

[Close]
BLAST of CmoCh04G021240 vs. TAIR10
Match: AT1G68200.1 (AT1G68200.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-06
Identity = 17/32 (53.12%), Postives = 26/32 (81.25%), Query Frame = 1 

Query: 194 RTDICRSWEDSGSCRFGHKCQFAHGKEELRPV 226
           +T++C  W+++G+C +G  CQFAHG +ELRPV
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPV 255

[Close]
BLAST of CmoCh04G021240 vs. NCBI nr
Match: gi|449462413|ref|XP_004148935.1| (PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 2.6e-77
Identity = 173/267 (64.79%), Postives = 203/267 (76.03%), Query Frame = 1 

Query: 102 SIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDE 161
           +I+NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD 
Sbjct: 57  NIMNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDG 116

Query: 162 ILISSVHGGAKTLKSALESGGGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEE 221
           ILISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+
Sbjct: 117 ILISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKED 176

Query: 222 LRPVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTE 281
           LRP  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTE
Sbjct: 177 LRPGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTE 236

Query: 282 LSRR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILE 341
           LS+R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I E
Sbjct: 237 LSKRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHE 296

Query: 342 VLYGSTTERAKKRLPVFVQLCSSQQEE 350
           VLYGSTTER KKRLPVFVQ+CS + +E
Sbjct: 297 VLYGSTTERTKKRLPVFVQICSEELQE 311

[Close]
BLAST of CmoCh04G021240 vs. NCBI nr
Match: gi|700188781|gb|KGN44014.1| (hypothetical protein Csa_7G103290 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 7.5e-77
Identity = 172/265 (64.91%), Postives = 201/265 (75.85%), Query Frame = 1 

Query: 104 INHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEIL 163
           +NH+ASSTSGS+SFGSR  G SLSPLSAIENLET P+RSPQIYGTP+KV EEVIVMD IL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 164 ISSVHGGAKTLKSALESGGGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELR 223
           ISS+HG AKT++S L+SG GGG    KNQYR+DICR WEDSG+CRFG+KCQFAHGKE+LR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 224 PVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNHSLTGIA--TTTQSNS--FDTTFKTELS 283
           P  LP++TK K      F E   T+G K RNNHSLTGIA  TTTQSNS   DT  KTELS
Sbjct: 121 PGRLPVRTKTK------FSE---TYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELS 180

Query: 284 RR----------GHSINSIHNLNT----DWSPEDDSIEAIVPETKST-RGDVDQYILEVL 343
           +R          GH+ N+   ++T    +WSPEDD I+  VP T+ST R DV+Q+I EVL
Sbjct: 181 KRGLTPTSSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVL 240

Query: 344 YGSTTERAKKRLPVFVQLCSSQQEE 350
           YGSTTER KKRLPVFVQ+CS + +E
Sbjct: 241 YGSTTERTKKRLPVFVQICSEELQE 253

[Close]
BLAST of CmoCh04G021240 vs. NCBI nr
Match: gi|502142052|ref|XP_004504769.1| (PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum])

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 134/340 (39.41%), Postives = 196/340 (57.65%), Query Frame = 1 

Query: 18  LNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVV 77
           LN  V P+++++D+       G Y Q T   +      YAE  D  +P+  YF + SP+ 
Sbjct: 20  LNENVSPLQVELDDK-----RGRYLQSTT--MSPGFQPYAENIDTGSPLARYFFAGSPIS 79

Query: 78  GKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLET 137
           GK     ++F++P+    ++ YRS+ +  + +++SG+SSFGSR G  SLSPLS+IEN+E 
Sbjct: 80  GKS---SESFTSPIFG--SSKYRSARMQQYCATSSGNSSFGSR-GRLSLSPLSSIENMEI 139

Query: 138 TPVRSPQIYGTPLKVHEEVIVMDEILISSVHGG--AKTLKSALESGGGGGSSLSKNQYRT 197
            P+ SP +YGTP+KV EEVIVMD+I +  + GG   ++  S+   G G  SS SK+ Y+T
Sbjct: 140 KPLMSPPMYGTPVKVDEEVIVMDDIQVRPMSGGKNGRSSSSSSSRGSGSSSSSSKSVYKT 199

Query: 198 DICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDR---PFGEPYLTHGLKS 257
           DICR+WE+SG+CR+  KCQFAHG+EEL P  L +K+K + +  +     G+   T+G  S
Sbjct: 200 DICRAWEESGNCRYNSKCQFAHGREELHPSRL-MKSKSEAQTSKLSIRLGQG--TYGPNS 259

Query: 258 RNNHSLTGIATTTQSNSFDTTFKTELSRRGHSINSIH---NLNTDWSPEDDSIEAIVP-- 317
           R  H    +   T+S    T   T          S H   N+  DWSP DD I+ ++P  
Sbjct: 260 RVVHEHPAV---TESECALTGLITSQPASPEPYRSTHANSNIINDWSPLDDGIDVVLPNG 319

Query: 318 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQ 347
            +   +R +VD YI  +L   TT   K+RLPVFV +C  Q
Sbjct: 320 SDKVPSREEVDAYIFGLLNEPTT---KRRLPVFVAICEGQ 337

[Close]
BLAST of CmoCh04G021240 vs. NCBI nr
Match: gi|720016204|ref|XP_010261083.1| (PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera])

HSP 1 Score: 165.2 bits (417), Expect = 2.0e-37
Identity = 118/325 (36.31%), Postives = 167/325 (51.38%), Query Frame = 1 

Query: 25  IKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKHDRSTPIVSYFRSRSPVVGKLPSVG 84
           I  Q D+ L++G  G Y   +++  P I +      D  + ++ Y R+       L    
Sbjct: 21  ISPQSDDQLILGRRGRYGFTSSAFDPQIHNPL----DVDSTLIRYSRATG---ASLSPSA 80

Query: 85  DTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVRSPQ 144
           D F + + D  +  +   +++    S  GSS           SPLS+IENLET P +SP 
Sbjct: 81  DVFPSQIID--STKFHPLLLHRSNISPRGSSP----------SPLSSIENLETPPSKSPP 140

Query: 145 IYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALESGGGGGSSLSKNQ-YRTDICRSWED 204
           ++ TP+KV E+V+VMD IL+ SV GG         SG   GSS S N  Y+T+ICR+WED
Sbjct: 141 VFATPVKVEEDVLVMDGILVGSVPGGRT------RSGPDSGSSSSGNSLYKTEICRAWED 200

Query: 205 SGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFGEPYLTHGLKSRNNH--SLTGI 264
           +G+CR+G KCQFAHGKEELRP  +  K K + +  + F      +G K R  H  +++  
Sbjct: 201 TGNCRYGSKCQFAHGKEELRPTRVSSKNKSEGQLCKSFATGTCAYGSKCRFIHHMAVSSP 260

Query: 265 ATTTQSNSFDTTFKTELSRRGHSINSIHNLNTDWSPEDDSIEAIVPETKS---TRGDVDQ 324
           + T  S    T  K E                DWSP DD IE  +P +     TR DV+ 
Sbjct: 261 SRTATSAGATTMIKPE--------------QDDWSPADDGIEVRLPSSTEHCPTREDVNL 303

Query: 325 YILEVLYGSTTERAKKRLPVFVQLC 344
           YI +VLYG +    +KRLPVF ++C
Sbjct: 321 YIHDVLYGPS---RRKRLPVFAEIC 303

[Close]
BLAST of CmoCh04G021240 vs. NCBI nr
Match: gi|731397458|ref|XP_010652879.1| (PREDICTED: tristetraprolin [Vitis vinifera])

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-34
Identity = 104/281 (37.01%), Postives = 154/281 (54.80%), Query Frame = 1 

Query: 82  SVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSRRGGSSLSPLSAIENLETTPVR 141
           + GD F+TPV+D   + YRS + ++  SS+ G  S  SR      SPLS +ENLE TP  
Sbjct: 40  AAGDGFTTPVSDA--SMYRSLLTHYQHSSSDGLGSLPSRG-----SPLSLVENLEVTPTP 99

Query: 142 SPQIYGTPLKVHEEVIVMDEILISSVHG--GAKTLKSALESGGGGGSSLSKNQYRTDICR 201
           +       +KV E+V+VMD I++ S+ G  G +++ S         ++     Y+T+ICR
Sbjct: 100 A-------VKVEEDVLVMDGIMVESMAGMKGMRSVSSDSSGSSSAAAASGNGLYKTEICR 159

Query: 202 SWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKVRYDRPFG-EPYLTHGLKSRNNHSL 261
           SWED  SCR+G KCQFAHGKEELRP+   ++T+P+    + F       +G + R +H +
Sbjct: 160 SWEDLASCRYGAKCQFAHGKEELRPLRYSMRTRPEGNVCKQFAVTGTCPYGPRCRFSHQI 219

Query: 262 TGIATTTQSNSFDTTFKTELSRRGHSINSIHNLNT--------DWSPEDDSIEAIVP--- 321
             + +TTQ            SR  H+  +   + T        DWSP DD IE ++P   
Sbjct: 220 QSLLSTTQQT-------PSPSRPQHTAATTPTIKTATPTKTTADWSPMDDGIEVVLPGSS 279

Query: 322 -ETKSTRGDVDQYILEVLYGSTTERAKKRLPVFVQLCSSQQ 348
            E  ++R +V+ YI   LYG TT R  +RLPVF ++C S++
Sbjct: 280 AEKPASRDEVNTYINSFLYGPTTPR--RRLPVFEEICPSRE 297

The following BLAST results are available for this feature:
BLAST of CmoCh04G021240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TISD_MOUSE5.7e-0831.86Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2[more]
Z36L3_MOUSE5.7e-0849.06Zinc finger protein 36, C3H1 type-like 3 OS=Mus musculus GN=Zfp36l3 PE=1 SV=1[more]
TISD_HUMAN7.4e-0827.85Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3[more]
TIS11_DROME1.3e-0746.30Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2[more]
TISB_HUMAN1.3e-0740.91Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1[more]
BLAST of CmoCh04G021240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K529_CUCSA5.2e-7764.91Uncharacterized protein OS=Cucumis sativus GN=Csa_7G103290 PE=4 SV=1[more]
A5B230_VITVI1.4e-3437.01Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026075 PE=4 SV=1[more]
K7KPS7_SOYBN1.5e-2830.99Uncharacterized protein OS=Glycine max GN=GLYMA_05G120200 PE=4 SV=1[more]
K7L5F5_SOYBN5.9e-2832.27Uncharacterized protein OS=Glycine max GN=GLYMA_08G075000 PE=4 SV=1[more]
A0A072UPE4_MEDTR1.0e-2735.83Uncharacterized protein OS=Medicago truncatula GN=MTR_4g094292 PE=4 SV=1[more]
BLAST of CmoCh04G021240 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32360.18.7e-0742.86 Zinc finger (CCCH-type) family protein[more]
AT1G66810.12.5e-0653.13 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G68200.13.3e-0653.13 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of CmoCh04G021240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462413|ref|XP_004148935.1|2.6e-7764.79PREDICTED: uncharacterized protein LOC101215865 [Cucumis sativus][more]
gi|700188781|gb|KGN44014.1|7.5e-7764.91hypothetical protein Csa_7G103290 [Cucumis sativus][more]
gi|502142052|ref|XP_004504769.1|1.2e-4739.41PREDICTED: zinc finger protein 36, C3H1 type-like 2 [Cicer arietinum][more]
gi|720016204|ref|XP_010261083.1|2.0e-3736.31PREDICTED: uncharacterized protein LOC104599994 [Nelumbo nucifera][more]
gi|731397458|ref|XP_010652879.1|1.2e-3437.01PREDICTED: tristetraprolin [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021240.1CmoCh04G021240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 190..225
score: 2.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 193..219
score: 3.
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 192..219
score: 5.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 192..220
score: 15
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 192..224
score: 6.0
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 259..285
score: 3.2E-12coord: 182..234
score: 3.2
NoneNo IPR availablePANTHERPTHR12547:SF72ZINC FINGER PROTEIN 36, C3H1 TYPE-LIKE 2coord: 259..285
score: 3.2E-12coord: 182..234
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G021240Cp4.1LG01g17490Cucurbita pepo (Zucchini)cmocpeB685
CmoCh04G021240Carg27168Silver-seed gourdcarcmoB0683
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G021240Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G021240Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G021240Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G021240Bottle gourd (USVL1VR-Ls)cmolsiB612
CmoCh04G021240Bottle gourd (USVL1VR-Ls)cmolsiB613
CmoCh04G021240Cucumber (Gy14) v2cgybcmoB637
CmoCh04G021240Melon (DHL92) v3.6.1cmomedB719
CmoCh04G021240Watermelon (97103) v2cmowmbB680
CmoCh04G021240Watermelon (97103) v2cmowmbB740
CmoCh04G021240Wax gourdcmowgoB0827
CmoCh04G021240Wax gourdcmowgoB0909