Cp4.1LG01g13370 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g13370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein IDA
Location	Cp4.1LG01 : 8258973 .. 8259233 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTTCTTCTTCTTCTTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGAACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTTCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

mRNA sequence

ATGCTTTCTTCTTCTTCTTCTTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGAACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTTCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Coding sequence (CDS)

ATGCTTTCTTCTTCTTCTTCTTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGAACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTTCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Protein sequence

MLSSSSSSSLSAIFVLLLLLLSGFCSATRPGKTMEHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

Homology

[Close]

BLAST of Cp4.1LG01g13370 vs. Swiss-Prot
Match: IDA_ARATH (Protein IDA OS=Arabidopsis thaliana GN=IDA PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-09
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 14 FVLLLLLLSGFCSATRPGKTMEHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPS 73
          FVL L   S   +A R G TME  +K ++    +K         F YLP+GVPIPPS PS
Sbjct: 13 FVLFLAASSSCVAAARIGATME--MKKNIKRLTFKNS-----HIFGYLPKGVPIPPSAPS 72

Query: 74 DRHNSLVDSLP 85
           RHNS V+SLP
Sbjct: 73 KRHNSFVNSLP 76

[Close]

BLAST of Cp4.1LG01g13370 vs. TrEMBL
Match: A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MLSSSSSSSLSA-IFVLLLLLLSGFCSATRPGKTMEH-ELKPDLSNFNYKTGFRYVGQTF 60
          M SSSS +S+   I +LLLLLLSG  SATRPGKTME  E+ PD+SN +YKT FRY GQTF
Sbjct: 1  MPSSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTF 60

Query: 61 SYLPRGVPIPPSGPSDRHNSLVDSLPPS 87
          S+LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 61 SFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Cp4.1LG01g13370 vs. TrEMBL
Match: M5XH24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017234mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 15 VLLLLLLSGFCSATRPGKTM---EHELKPDLSNFN------YKTGFRYVGQTFSYLPRGV 74
          V L+LLL G CS  R GKT+   +H++  +L +        ++TGF+Y GQ FS+ P+G 
Sbjct: 4  VSLILLLIGSCSGARLGKTVILADHKVLLNLEHTKTLNPRTHRTGFQYRGQVFSFFPKGT 63

Query: 75 PIPPSGPSDRHNSLVDSLP 85
          PIPPSGPS RHNS+VDS P
Sbjct: 64 PIPPSGPSKRHNSVVDSTP 82

[Close]

BLAST of Cp4.1LG01g13370 vs. TrEMBL
Match: A0A0D2T2V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G187700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 7   SSSLSAIFVLLLLLLSGFCS-ATRPGKTMEHELKPDLSNF--NYKTGFRYVGQTFSYLPR 66
           S+ +  +F++ LL  S F   ATRPGKT+  +    ++ F   Y+TGFRY GQ F++ P+
Sbjct: 23  SNIIYVVFLITLLAGSSFARPATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPK 82

Query: 67  GVPIPPSGPSDRHNSLVDS 83
           G+PIPPSGPS RHNS+VDS
Sbjct: 83  GIPIPPSGPSKRHNSVVDS 101

[Close]

BLAST of Cp4.1LG01g13370 vs. TrEMBL
Match: F6HF28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.0e-11
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 3   SSSSSSSLSA-------IFVLLLLLLSGFCSATRPGKTM--EHELKPDLSNFN-----YK 62
           SSSSS S S          V +  L+ G C+ATRPG+ M  E E   + ++ N     +K
Sbjct: 11  SSSSSKSPSMHLSCKPICLVFIFFLVVGSCTATRPGRMMMAEQEESNERAHMNPQEHKFK 70

Query: 63  TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 85
           T F+  GQ F++ P+GVPIPPSGPS RHNS VDS P
Sbjct: 71  TSFQQGGQMFNFFPKGVPIPPSGPSKRHNSFVDSTP 106

[Close]

BLAST of Cp4.1LG01g13370 vs. TrEMBL
Match: V4TCI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-10
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 1  MLSSSSSSSLSAIFV---------LLLLLLSGFCSATRPGKTMEHELKPDLSNFNYKTGF 60
          M SSSSSSS   + +         L++++L G C A RPG TM+      ++   +KT F
Sbjct: 1  MASSSSSSSSKCLHISCKQIYLLFLIVIVLIGSCEAARPGTTMD-----SVNVKLHKTSF 60

Query: 61 RYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS 83
          RY  Q F++LP+G PIPPSGPS RHNS+VDS
Sbjct: 61 RYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of Cp4.1LG01g13370 vs. TAIR10
Match: AT1G68765.1 (AT1G68765.1 Putative membrane lipoprotein)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-10
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 14 FVLLLLLLSGFCSATRPGKTMEHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPS 73
          FVL L   S   +A R G TME  +K ++    +K         F YLP+GVPIPPS PS
Sbjct: 13 FVLFLAASSSCVAAARIGATME--MKKNIKRLTFKNS-----HIFGYLPKGVPIPPSAPS 72

Query: 74 DRHNSLVDSLP 85
           RHNS V+SLP
Sbjct: 73 KRHNSFVNSLP 76

[Close]

BLAST of Cp4.1LG01g13370 vs. NCBI nr
Match: gi|659091413|ref|XP_008446537.1| (PREDICTED: protein IDA [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-23
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = 1


Query: 3   SSSSSSSLSA---------IFVLLLLLLSGFCSATRPGKTMEHELKPDLSNFNYKT-GFR 62
           SSSSSSS S+         IF+LLLLLLSGF SATRPG TME    PD+SN NYKT  FR
Sbjct: 12  SSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPGGTMEF---PDMSNSNYKTTAFR 71

Query: 63  YVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 87
           Y GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 72  YAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Cp4.1LG01g13370 vs. NCBI nr
Match: gi|700196858|gb|KGN52035.1| (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MLSSSSSSSLSA-IFVLLLLLLSGFCSATRPGKTMEH-ELKPDLSNFNYKTGFRYVGQTF 60
          M SSSS +S+   I +LLLLLLSG  SATRPGKTME  E+ PD+SN +YKT FRY GQTF
Sbjct: 1  MPSSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTF 60

Query: 61 SYLPRGVPIPPSGPSDRHNSLVDSLPPS 87
          S+LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 61 SFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Cp4.1LG01g13370 vs. NCBI nr
Match: gi|657994058|ref|XP_008389328.1| (PREDICTED: protein IDA [Malus domestica])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 49/95 (51.58%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 2   LSSSSSSSLSAIFVLLLLL--LSGFCSATRPGKTMEHELK-------PDLSNFN---YKT 61
           L S   SS   +FVLLL+L  L+G C+ATR  KT+   L             FN   ++T
Sbjct: 7   LKSKHLSSCKTVFVLLLVLNLLTGSCTATRLAKTVVVRLDGKALMNLDHAKTFNPRKHET 66

Query: 62  GFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 85
           GFRY GQ FSY P+G PIPPSGPS+RHNS VDS P
Sbjct: 67  GFRYRGQIFSYFPKGTPIPPSGPSNRHNSAVDSTP 101

[Close]

BLAST of Cp4.1LG01g13370 vs. NCBI nr
Match: gi|694417107|ref|XP_009336645.1| (PREDICTED: protein IDA-like [Pyrus x bretschneideri])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-11
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 1


Query: 4   SSSSSSLSAIFVLLLLL--LSGFCSATRPGKTMEHELK-------PDLSNFN---YKTGF 63
           S   SS   +FV+LL+L  L+G C+ATR  KT+   L             FN   ++TGF
Sbjct: 9   SKHLSSCKTVFVVLLVLNLLTGSCTATRLAKTLVVRLDGKALMNLDHAKTFNPRKHETGF 68

Query: 64  RYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 85
           RY GQ FSY P+G PIPPSGPS RHNS VDS P
Sbjct: 69  RYRGQIFSYFPKGTPIPPSGPSKRHNSAVDSTP 101

[Close]

BLAST of Cp4.1LG01g13370 vs. NCBI nr
Match: gi|596227242|ref|XP_007224213.1| (hypothetical protein PRUPE_ppa017234mg [Prunus persica])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 15 VLLLLLLSGFCSATRPGKTM---EHELKPDLSNFN------YKTGFRYVGQTFSYLPRGV 74
          V L+LLL G CS  R GKT+   +H++  +L +        ++TGF+Y GQ FS+ P+G 
Sbjct: 4  VSLILLLIGSCSGARLGKTVILADHKVLLNLEHTKTLNPRTHRTGFQYRGQVFSFFPKGT 63

Query: 75 PIPPSGPSDRHNSLVDSLP 85
          PIPPSGPS RHNS+VDS P
Sbjct: 64 PIPPSGPSKRHNSVVDSTP 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g13370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDA_ARATH	8.2e-09	47.89	Protein IDA OS=Arabidopsis thaliana GN=IDA PE=1 SV=1	[more]

BLAST of Cp4.1LG01g13370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07_CUCSA	2.4e-23	72.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1	[more]
M5XH24_PRUPE	1.2e-11	50.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017234mg PE=4 SV=1	[more]
A0A0D2T2V4_GOSRA	2.1e-11	50.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G187700 PE=4 SV=1	[more]
F6HF28_VITVI	8.0e-11	46.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=...	[more]
V4TCI5_9ROSI	1.0e-10	47.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g13370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68765.1	4.6e-10	47.89	Putative membrane lipoprotein	[more]

BLAST of Cp4.1LG01g13370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091413\|ref\|XP_008446537.1\|	2.0e-23	70.21	PREDICTED: protein IDA [Cucumis melo]	[more]
gi\|700196858\|gb\|KGN52035.1\|	3.4e-23	72.73	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
gi\|657994058\|ref\|XP_008389328.1\|	2.1e-12	51.58	PREDICTED: protein IDA [Malus domestica]	[more]
gi\|694417107\|ref\|XP_009336645.1\|	1.0e-11	50.54	PREDICTED: protein IDA-like [Pyrus x bretschneideri]	[more]
gi\|596227242\|ref\|XP_007224213.1\|	1.8e-11	50.63	hypothetical protein PRUPE_ppa017234mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g13370.1	Cp4.1LG01g13370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 1..84 score: 6.9
None	No IPR available	PANTHER	PTHR33599:SF3	SUBFAMILY NOT NAMED	coord: 1..84 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g13370	Cucsa.284020	Cucumber (Gy14) v1	cgycpeB0750
Cp4.1LG01g13370	CmoCh04G016180	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g13370	Cla020355	Watermelon (97103) v1	cpewmB427
Cp4.1LG01g13370	Csa5G608230	Cucumber (Chinese Long) v2	cpecuB442
Cp4.1LG01g13370	MELO3C012204	Melon (DHL92) v3.5.1	cpemeB363
Cp4.1LG01g13370	ClCG05G023140	Watermelon (Charleston Gray)	cpewcgB388
Cp4.1LG01g13370	CSPI05G24840	Wild cucumber (PI 183967)	cpecpiB442
Cp4.1LG01g13370	Lsi04G003000	Bottle gourd (USVL1VR-Ls)	cpelsiB352
Cp4.1LG01g13370	MELO3C012204.2	Melon (DHL92) v3.6.1	cpemedB423
Cp4.1LG01g13370	CsaV3_5G033860	Cucumber (Chinese Long) v3	cpecucB0546
Cp4.1LG01g13370	Carg01805	Silver-seed gourd	carcpeB1177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g13370	Cp4.1LG09g02700	Cucurbita pepo (Zucchini)	cpecpeB040

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g13370	Cucurbita maxima (Rimu)	cmacpeB316
Cp4.1LG01g13370	Cucurbita maxima (Rimu)	cmacpeB429
Cp4.1LG01g13370	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g13370	Cucurbita moschata (Rifu)	cmocpeB115
Cp4.1LG01g13370	Cucurbita moschata (Rifu)	cmocpeB392
Cp4.1LG01g13370	Wild cucumber (PI 183967)	cpecpiB381
Cp4.1LG01g13370	Cucumber (Chinese Long) v2	cpecuB381
Cp4.1LG01g13370	Bottle gourd (USVL1VR-Ls)	cpelsiB371
Cp4.1LG01g13370	Watermelon (Charleston Gray)	cpewcgB401
Cp4.1LG01g13370	Watermelon (97103) v1	cpewmB470
Cp4.1LG01g13370	Melon (DHL92) v3.5.1	cpemeB395
Cp4.1LG01g13370	Cucumber (Gy14) v2	cgybcpeB063
Cp4.1LG01g13370	Cucumber (Gy14) v2	cgybcpeB648
Cp4.1LG01g13370	Melon (DHL92) v3.6.1	cpemedB458
Cp4.1LG01g13370	Silver-seed gourd	carcpeB1451
Cp4.1LG01g13370	Cucumber (Chinese Long) v3	cpecucB0474
Cp4.1LG01g13370	Wax gourd	cpewgoB0557
Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	cpecpeB348
Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	cpecpeB399