Cla020355 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020355
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 30555993 .. 30556298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

mRNA sequence

ATGCCTTCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

Coding sequence (CDS)

ATGCCTTCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

Protein sequence

MPSSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN

Homology

[Close]

BLAST of Cla020355 vs. TrEMBL
Match: A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   MPSSSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSY 60
           MPSSSS +S            PI I + LLLL SG SSATRPGK ME   MN  DMSNSY
Sbjct: 1   MPSSSSQTSI-----------PIFILLLLLLLLSGLSSATRPGKTMEFTEMN-PDMSNSY 60

Query: 61  FNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 102
              KT FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  ---KTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Cla020355 vs. TrEMBL
Match: F6HF28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.4e-16
Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 4   SSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMM---EHHGMNNSDMSNSYF 63
           SSSSSS S S    CK  PI +     L+ G  +ATRPG+MM   +      + M+    
Sbjct: 10  SSSSSSKSPSMHLSCK--PICLVFIFFLVVGSCTATRPGRMMMAEQEESNERAHMNPQEH 69

Query: 64  NYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 102
            +KT F+  GQ F+F P+GVPIPPSGPS RHNS VDS P N
Sbjct: 70  KFKTSFQQGGQMFNFFPKGVPIPPSGPSKRHNSFVDSTPNN 108

[Close]

BLAST of Cla020355 vs. TrEMBL
Match: V4TCI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 3  SSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNY 62
          +SSSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +
Sbjct: 2  ASSSSSSSSKCLHISCK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLH 61

Query: 63 KTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 98
          KT FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 KTSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of Cla020355 vs. TrEMBL
Match: A0A067FVE8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038148mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-12
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 4  SSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYK 63
          +SSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +K
Sbjct: 2  ASSSSSSSKCLHIACK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLHK 61

Query: 64 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 98
          T FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 TSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 85

[Close]

BLAST of Cla020355 vs. TrEMBL
Match: A0A061EC53_THECC (Membrane lipoprotein, putative OS=Theobroma cacao GN=TCM_011888 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 3  SSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNY 62
          SSS S  S   S  +   N I +   ++LL+G S ATRPG  M     +   M+     +
Sbjct: 6  SSSLSFQSKRISCTRQLSNIIYVSFLIMLLAGSSFATRPGATMIID--DKVSMATLRRRH 65

Query: 63 KTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 98
          +T F+Y GQ F+F P+G PIPPSGPS RHNSVVDS
Sbjct: 66 ETSFQYQGQMFNFFPKGTPIPPSGPSKRHNSVVDS 98

[Close]

BLAST of Cla020355 vs. NCBI nr
Match: gi|659091413|ref|XP_008446537.1| (PREDICTED: protein IDA [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 7.1e-28
Identity = 75/101 (74.26%), Postives = 78/101 (77.23%), Query Frame = 1


Query: 3   SSSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSYFN 62
           SSSSSSSSSSSS FQ K N I IFI LLLL SGFSSATRPG  ME   M+NS       N
Sbjct: 9   SSSSSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPGGTMEFPDMSNS-------N 68

Query: 63  YKT-GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 102
           YKT  FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 69  YKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Cla020355 vs. NCBI nr
Match: gi|700196858|gb|KGN52035.1| (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 69/102 (67.65%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 1   MPSSSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSY 60
           MPSSSS +S            PI I + LLLL SG SSATRPGK ME   MN  DMSNSY
Sbjct: 1   MPSSSSQTSI-----------PIFILLLLLLLLSGLSSATRPGKTMEFTEMN-PDMSNSY 60

Query: 61  FNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 102
              KT FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  ---KTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Cla020355 vs. NCBI nr
Match: gi|567890473|ref|XP_006437757.1| (hypothetical protein CICLE_v10033191mg [Citrus clementina])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1


Query: 3  SSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNY 62
          +SSSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +
Sbjct: 2  ASSSSSSSSKCLHISCK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLH 61

Query: 63 KTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 98
          KT FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 KTSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of Cla020355 vs. NCBI nr
Match: gi|694311061|ref|XP_009356058.1| (PREDICTED: protein IDA [Pyrus x bretschneideri])

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 5   SSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMM----EHHGMNNSDMSNSYF 64
           +S+SS  S  F   K     + + L LL G  +ATR GK +    +   + N D + ++ 
Sbjct: 2   ASTSSLKSKHFSSGKNTVFVVLLVLNLLMGCCTATRLGKTLVVSLDGKALMNLDHTKTFN 61

Query: 65  --NYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 102
              ++TGFRY GQ FS+ P+G  IPPSGPS RHNSVVDS P N
Sbjct: 62  PRKHETGFRYKGQIFSYFPKGTIIPPSGPSKRHNSVVDSTPGN 104

[Close]

BLAST of Cla020355 vs. NCBI nr
Match: gi|641851259|gb|KDO70130.1| (hypothetical protein CISIN_1g038148mg [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 4  SSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYK 63
          +SSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +K
Sbjct: 2  ASSSSSSSKCLHIACK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLHK 61

Query: 64 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 98
          T FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 TSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 85

The following BLAST results are available for this feature:

BLAST of Cla020355 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07_CUCSA	1.3e-23	67.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1	[more]
F6HF28_VITVI	7.4e-16	48.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=...	[more]
V4TCI5_9ROSI	2.2e-12	48.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1	[more]
A0A067FVE8_CITSI	8.4e-12	47.87	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038148mg PE=4 SV=1	[more]
A0A061EC53_THECC	4.2e-11	46.32	Membrane lipoprotein, putative OS=Theobroma cacao GN=TCM_011888 PE=4 SV=1	[more]

BLAST of Cla020355 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091413\|ref\|XP_008446537.1\|	7.1e-28	74.26	PREDICTED: protein IDA [Cucumis melo]	[more]
gi\|700196858\|gb\|KGN52035.1\|	1.8e-23	67.65	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
gi\|567890473\|ref\|XP_006437757.1\|	3.2e-12	48.42	hypothetical protein CICLE_v10033191mg [Citrus clementina]	[more]
gi\|694311061\|ref\|XP_009356058.1\|	9.3e-12	43.69	PREDICTED: protein IDA [Pyrus x bretschneideri]	[more]
gi\|641851259\|gb\|KDO70130.1\|	1.2e-11	47.87	hypothetical protein CISIN_1g038148mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0010102	lateral root morphogenesis
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0009723	response to ethylene
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005102	receptor binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU29267	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU30793	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU63075	watermelon EST collection version 2.0	transcribed_cluster
WMU68079	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020355	Cla020355.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU29267	WMU29267	transcribed_cluster
WMU30793	WMU30793	transcribed_cluster
WMU63075	WMU63075	transcribed_cluster
WMU68079	WMU68079	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 5..101 score: 3.2
None	No IPR available	PANTHER	PTHR33599:SF3	SUBFAMILY NOT NAMED	coord: 5..101 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020355	Cla97C05G105040	Watermelon (97103) v2	wmwmbB207
Cla020355	Csa5G608230	Cucumber (Chinese Long) v2	cuwmB401
Cla020355	MELO3C012204	Melon (DHL92) v3.5.1	mewmB061
Cla020355	ClCG05G023140	Watermelon (Charleston Gray)	wcgwmB285
Cla020355	CSPI05G24840	Wild cucumber (PI 183967)	cpiwmB410
Cla020355	Cucsa.284020	Cucumber (Gy14) v1	cgywmB524
Cla020355	Lsi04G003000	Bottle gourd (USVL1VR-Ls)	lsiwmB312
Cla020355	Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	cpewmB427
Cla020355	Cp4.1LG09g02700	Cucurbita pepo (Zucchini)	cpewmB031
Cla020355	MELO3C012204.2	Melon (DHL92) v3.6.1	medwmB061
Cla020355	Carg01805	Silver-seed gourd	carwmB0842
Cla020355	CsaV3_5G033860	Cucumber (Chinese Long) v3	cucwmB428

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020355	Melon (DHL92) v3.6.1	medwmB266
Cla020355	Silver-seed gourd	carwmB0591
Cla020355	Silver-seed gourd	carwmB1044
Cla020355	Cucumber (Chinese Long) v3	cucwmB043
Cla020355	Cucumber (Chinese Long) v3	cucwmB045
Cla020355	Cucumber (Chinese Long) v3	cucwmB432
Cla020355	Watermelon (97103) v2	wmwmbB205
Cla020355	Watermelon (97103) v2	wmwmbB213
Cla020355	Wax gourd	wgowmB550
Cla020355	Wax gourd	wgowmB667
Cla020355	Watermelon (97103) v1	wmwmB124
Cla020355	Watermelon (97103) v1	wmwmB130
Cla020355	Watermelon (97103) v1	wmwmB136
Cla020355	Cucumber (Gy14) v1	cgywmB383
Cla020355	Cucumber (Gy14) v1	cgywmB446
Cla020355	Cucurbita maxima (Rimu)	cmawmB112
Cla020355	Cucurbita maxima (Rimu)	cmawmB372
Cla020355	Cucurbita maxima (Rimu)	cmawmB699
Cla020355	Cucurbita moschata (Rifu)	cmowmB365
Cla020355	Cucurbita moschata (Rifu)	cmowmB693
Cla020355	Cucurbita moschata (Rifu)	cmowmB696
Cla020355	Melon (DHL92) v3.5.1	mewmB154
Cla020355	Melon (DHL92) v3.5.1	mewmB275
Cla020355	Watermelon (Charleston Gray)	wcgwmB096
Cla020355	Watermelon (Charleston Gray)	wcgwmB326
Cla020355	Cucumber (Chinese Long) v2	cuwmB039
Cla020355	Cucumber (Chinese Long) v2	cuwmB040
Cla020355	Cucumber (Chinese Long) v2	cuwmB405
Cla020355	Cucumber (Chinese Long) v2	cuwmB406
Cla020355	Cucurbita pepo (Zucchini)	cpewmB439
Cla020355	Bottle gourd (USVL1VR-Ls)	lsiwmB258
Cla020355	Bottle gourd (USVL1VR-Ls)	lsiwmB402
Cla020355	Cucumber (Gy14) v2	cgybwmB038
Cla020355	Cucumber (Gy14) v2	cgybwmB377