Carg01805 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01805
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein IDA-LIKE
Location	Cucurbita_argyrosperma_scaffold_003 : 522857 .. 523123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTTGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCTAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

mRNA sequence

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTTGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCTAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Coding sequence (CDS)

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTTGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCTAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Protein sequence

MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

Homology

[Close]

BLAST of Carg01805 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-18
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 25 GFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVD 84
          G  SATRPGKTM   E+ PD+ N +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VD
Sbjct: 24 GLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD 83

Query: 85 SLPPS 89
          SLPP+
Sbjct: 84 SLPPN 87

[Close]

BLAST of Carg01805 vs. NCBI nr
Match: PPD96063.1 (hypothetical protein GOBAR_DD06910 [Gossypium barbadense] >PPR89178.1 hypothetical protein GOBAR_AA31502 [Gossypium barbadense])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 24 SGFCSATRPGKTMGHELKPDLLNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSL 83
          +G   ATRPGKT+  +    +  F   Y+TGFRY GQ F++ P+G+PIPPSGPS RHNS+
Sbjct: 37 AGSSFATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSV 96

Query: 84 VDS 85
          VDS
Sbjct: 97 VDS 99

[Close]

BLAST of Carg01805 vs. NCBI nr
Match: KJB50809.1 (hypothetical protein B456_008G187700 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 29  ATRPGKTMGHELKPDLLNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS 85
           ATRPGKT+  +    +  F   Y+TGFRY GQ F++ P+G+PIPPSGPS RHNS+VDS
Sbjct: 44  ATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 101

[Close]

BLAST of Carg01805 vs. NCBI nr
Match: PON49628.1 (Protein IDA-LIKE [Trema orientalis])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24 SGFCSATRPGKTM--GHELKPDLLNFN------YKTGFRYVGQTFSYLPRGVPIPPSGPS 81
          +G CSATRP KTM    E+ PD  +++       +TGFR+ GQTF++ P+G P+PPSGPS
Sbjct: 30 TGSCSATRPAKTMTVEREVSPDSGDYSKLRPRKSQTGFRFRGQTFNFFPKGTPVPPSGPS 89

[Close]

BLAST of Carg01805 vs. NCBI nr
Match: ONI31275.1 (hypothetical protein PRUPE_1G303500 [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 25  GFCSATRPGKTMGHELKPDLLNF---------NYKTGFRYVGQTFSYLPRGVPIPPSGPS 84
           G CS  R GKT+       LLN           ++TGF+Y GQ FS+ P+G PIPPSGPS
Sbjct: 30  GSCSGARLGKTVILADHKVLLNLEHTKTLNPRTHRTGFQYRGQVFSFFPKGTPIPPSGPS 89

Query: 85  DRHNSLVDSLP 87
            RHNS+VDS P
Sbjct: 90  KRHNSVVDSTP 100

[Close]

BLAST of Carg01805 vs. TAIR10
Match: AT1G68765.1 (Putative membrane lipoprotein)

HSP 1 Score: 56.6 bits (135), Expect = 8.9e-09
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 24 SGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVD 83
          S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+
Sbjct: 21 SSCVAAARIGATM--EMKKNIKRLTFKN-----SHIFGYLPKGVPIPPSAPSKRHNSFVN 76

Query: 84 SLP 87
          SLP
Sbjct: 81 SLP 76

[Close]

BLAST of Carg01805 vs. TAIR10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1)

HSP 1 Score: 40.0 bits (92), Expect = 8.6e-04
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 52 GFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSL 86
          GF + G+ F    + V +PPSGPS RHNS+V++L
Sbjct: 51 GFTFKGRVFHSFSKRVLVPPSGPSMRHNSVVNNL 84

[Close]

BLAST of Carg01805 vs. Swiss-Prot
Match: sp|Q8LAD7|IDA_ARATH (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 24 SGFCSATRPGKTMGHELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVD 83
          S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+
Sbjct: 21 SSCVAAARIGATM--EMKKNIKRLTFKN-----SHIFGYLPKGVPIPPSAPSKRHNSFVN 76

Query: 84 SLP 87
          SLP
Sbjct: 81 SLP 76

[Close]

BLAST of Carg01805 vs. TrEMBL
Match: tr|A0A0A0KR07|A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-18
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 25 GFCSATRPGKTMGH-ELKPDLLNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVD 84
          G  SATRPGKTM   E+ PD+ N +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VD
Sbjct: 24 GLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVD 83

Query: 85 SLPPS 89
          SLPP+
Sbjct: 84 SLPPN 87

[Close]

BLAST of Carg01805 vs. TrEMBL
Match: tr|A0A2P5SAI3|A0A2P5SAI3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31502 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 24 SGFCSATRPGKTMGHELKPDLLNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSL 83
          +G   ATRPGKT+  +    +  F   Y+TGFRY GQ F++ P+G+PIPPSGPS RHNS+
Sbjct: 37 AGSSFATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSV 96

Query: 84 VDS 85
          VDS
Sbjct: 97 VDS 99

[Close]

BLAST of Carg01805 vs. TrEMBL
Match: tr|A0A0D2T2V4|A0A0D2T2V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187700 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 29  ATRPGKTMGHELKPDLLNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS 85
           ATRPGKT+  +    +  F   Y+TGFRY GQ F++ P+G+PIPPSGPS RHNS+VDS
Sbjct: 44  ATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 101

[Close]

BLAST of Carg01805 vs. TrEMBL
Match: tr|A0A2P5BLG3|A0A2P5BLG3_9ROSA (Protein IDA-LIKE OS=Trema orientalis OX=63057 GN=TorRG33x02_316780 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 24 SGFCSATRPGKTM--GHELKPDLLNFN------YKTGFRYVGQTFSYLPRGVPIPPSGPS 81
          +G CSATRP KTM    E+ PD  +++       +TGFR+ GQTF++ P+G P+PPSGPS
Sbjct: 30 TGSCSATRPAKTMTVEREVSPDSGDYSKLRPRKSQTGFRFRGQTFNFFPKGTPVPPSGPS 89

[Close]

BLAST of Carg01805 vs. TrEMBL
Match: tr|M5XH24|M5XH24_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017234mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 25 GFCSATRPGKTMGHELKPDLLNF---------NYKTGFRYVGQTFSYLPRGVPIPPSGPS 84
          G CS  R GKT+       LLN           ++TGF+Y GQ FS+ P+G PIPPSGPS
Sbjct: 12 GSCSGARLGKTVILADHKVLLNLEHTKTLNPRTHRTGFQYRGQVFSFFPKGTPIPPSGPS 71

Query: 85 DRHNSLVDSLP 87
           RHNS+VDS P
Sbjct: 72 KRHNSVVDSTP 82

The following BLAST results are available for this feature:

BLAST of Carg01805 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52035.1	6.6e-18	73.85	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
PPD96063.1	3.0e-10	55.56	hypothetical protein GOBAR_DD06910 [Gossypium barbadense] >PPR89178.1 hypothetic...	[more]
KJB50809.1	6.6e-10	58.62	hypothetical protein B456_008G187700 [Gossypium raimondii]	[more]
PON49628.1	1.9e-09	52.31	Protein IDA-LIKE [Trema orientalis]	[more]
ONI31275.1	3.3e-09	50.70	hypothetical protein PRUPE_1G303500 [Prunus persica]	[more]

BLAST of Carg01805 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68765.1	8.9e-09	47.62	Putative membrane lipoprotein	[more]
AT3G25655.1	8.6e-04	50.00	inflorescence deficient in abscission (IDA)-like 1	[more]

BLAST of Carg01805 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LAD7\|IDA_ARATH	1.6e-07	47.62	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Carg01805 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KR07\|A0A0A0KR07_CUCSA	4.4e-18	73.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
tr\|A0A2P5SAI3\|A0A2P5SAI3_GOSBA	2.0e-10	55.56	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31502 PE=4 SV...	[more]
tr\|A0A0D2T2V4\|A0A0D2T2V4_GOSRA	4.4e-10	58.62	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G187700 PE=4 ...	[more]
tr\|A0A2P5BLG3\|A0A2P5BLG3_9ROSA	1.3e-09	52.31	Protein IDA-LIKE OS=Trema orientalis OX=63057 GN=TorRG33x02_316780 PE=4 SV=1	[more]
tr\|M5XH24\|M5XH24_PRUPE	2.2e-09	50.70	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017234mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01805-RA	Carg01805-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..88
None	No IPR available	PANTHER	PTHR33599:SF3	PROTEIN IDA	coord: 6..86
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 6..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01805	Cla020355	Watermelon (97103) v1	carwmB0842
Carg01805	Csa5G608230	Cucumber (Chinese Long) v2	carcuB0857
Carg01805	Csa5G577390	Cucumber (Chinese Long) v2	carcuB0859
Carg01805	MELO3C012204	Melon (DHL92) v3.5.1	carmeB0834
Carg01805	ClCG05G023140	Watermelon (Charleston Gray)	carwcgB0816
Carg01805	CSPI05G20110	Wild cucumber (PI 183967)	carcpiB0879
Carg01805	CSPI05G24840	Wild cucumber (PI 183967)	carcpiB0877
Carg01805	Cucsa.284020	Cucumber (Gy14) v1	carcgyB0968
Carg01805	Lsi04G003000	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01805	Cp4.1LG09g02700	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01805	Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01805	Cp4.1LG13g00350	Cucurbita pepo (Zucchini)	carcpeB1173
Carg01805	MELO3C012204.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01805	CsaV3_5G033860	Cucumber (Chinese Long) v3	carcucB0881
Carg01805	CsaV3_5G028910	Cucumber (Chinese Long) v3	carcucB0883
Carg01805	Cla97C05G105040	Watermelon (97103) v2	carwmbB0878

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01805	Wax gourd	carwgoB0983
Carg01805	Silver-seed gourd	carcarB538
Carg01805	Silver-seed gourd	carcarB461
Carg01805	Silver-seed gourd	carcarB627
Carg01805	Cucumber (Gy14) v2	carcgybB0830
Carg01805	Cucumber (Gy14) v2	carcgybB0831
Carg01805	Cucurbita maxima (Rimu)	carcmaB1160
Carg01805	Cucurbita maxima (Rimu)	carcmaB1162
Carg01805	Cucurbita maxima (Rimu)	carcmaB1167
Carg01805	Cucurbita maxima (Rimu)	carcmaB1170
Carg01805	Cucurbita moschata (Rifu)	carcmoB1135
Carg01805	Cucurbita moschata (Rifu)	carcmoB1138
Carg01805	Cucurbita moschata (Rifu)	carcmoB1141
Carg01805	Wild cucumber (PI 183967)	carcpiB0876
Carg01805	Cucumber (Chinese Long) v2	carcuB0856
Carg01805	Cucumber (Chinese Long) v3	carcucB0880
Carg01805	Bottle gourd (USVL1VR-Ls)	carlsiB768
Carg01805	Melon (DHL92) v3.5.1	carmeB0835
Carg01805	Melon (DHL92) v3.6.1	carmedB0847
Carg01805	Watermelon (Charleston Gray)	carwcgB0817
Carg01805	Watermelon (97103) v1	carwmB0846
Carg01805	Watermelon (97103) v2	carwmbB0880