ClCG05G023140 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G023140
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Protein IDA
Location	CG_Chr05 : 34993061 .. 34993363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

mRNA sequence

ATGCCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

Coding sequence (CDS)

ATGCCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCCAATGCAAACTCAATCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGTAAAATGATGGAACATCATGGGATGAATAATTCCGACATGTCGAATTCTTATTTCAATTACAAGACTGGCTTCCGATATGTCGGTCAGACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGTCACAACTCTGTCGTTGACTCTGTTCCTCCCAATTAA

Protein sequence

MPSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN

Homology

[Close]

BLAST of ClCG05G023140 vs. TrEMBL
Match: A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.5e-24
Identity = 69/101 (68.32%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MPSSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSYF 60
           MPSSSS +S           PI I + LLLL SG SSATRPGK ME   MN  DMSNSY 
Sbjct: 1   MPSSSSQTSI----------PIFILLLLLLLLSGLSSATRPGKTMEFTEMN-PDMSNSY- 60

Query: 61  NYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 101
             KT FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  --KTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of ClCG05G023140 vs. TrEMBL
Match: F6HF28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 2   PSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMM---EHHGMNNSDMSNSY 61
           PSSSSSS S S    CK  PI +     L+ G  +ATRPG+MM   +      + M+   
Sbjct: 9   PSSSSSSKSPSMHLSCK--PICLVFIFFLVVGSCTATRPGRMMMAEQEESNERAHMNPQE 68

Query: 62  FNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 101
             +KT F+  GQ F+F P+GVPIPPSGPS RHNS VDS P N
Sbjct: 69  HKFKTSFQQGGQMFNFFPKGVPIPPSGPSKRHNSFVDSTPNN 108

[Close]

BLAST of ClCG05G023140 vs. TrEMBL
Match: V4TCI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-13
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFN 60
          M SSSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   
Sbjct: 1  MASSSSSSSSKCLHISCK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKL 60

Query: 61 YKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 97
          +KT FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 61 HKTSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of ClCG05G023140 vs. TrEMBL
Match: A0A067FVE8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038148mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-12
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 3  SSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYK 62
          +SSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +K
Sbjct: 2  ASSSSSSSKCLHIACK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLHK 61

Query: 63 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 97
          T FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 TSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 85

[Close]

BLAST of ClCG05G023140 vs. TrEMBL
Match: A0A061EC53_THECC (Membrane lipoprotein, putative OS=Theobroma cacao GN=TCM_011888 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 2  PSSSSSSSSSSSFFQCKL---NPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSY 61
          P  SSS S  S    C     N I +   ++LL+G S ATRPG  M     +   M+   
Sbjct: 3  PPLSSSLSFQSKRISCTRQLSNIIYVSFLIMLLAGSSFATRPGATMIID--DKVSMATLR 62

Query: 62 FNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 97
            ++T F+Y GQ F+F P+G PIPPSGPS RHNSVVDS
Sbjct: 63 RRHETSFQYQGQMFNFFPKGTPIPPSGPSKRHNSVVDS 98

[Close]

BLAST of ClCG05G023140 vs. TAIR10
Match: AT1G68765.1 (AT1G68765.1 Putative membrane lipoprotein)

HSP 1 Score: 48.1 bits (113), Expect = 3.6e-06
Identity = 29/78 (37.18%), Postives = 36/78 (46.15%), Query Frame = 1


Query: 22 IAIFIFLLLLSGFSSATRPGKMME-HHGMNNSDMSNSYFNYKTGFRYVGQTFSFLPRGVP 81
          +   +FL   S   +A R G  ME    +      NS+             F +LP+GVP
Sbjct: 11 LCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHI------------FGYLPKGVP 70

Query: 82 IPPSGPSDRHNSVVDSVP 99
          IPPS PS RHNS V+S+P
Sbjct: 71 IPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of ClCG05G023140 vs. NCBI nr
Match: gi|659091413|ref|XP_008446537.1| (PREDICTED: protein IDA [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 74/100 (74.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 3   SSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSYFNY 62
           SSSSSSSSSSS FQ K N I IFI LLLL SGFSSATRPG  ME   M+NS       NY
Sbjct: 10  SSSSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPGGTMEFPDMSNS-------NY 69

Query: 63  KT-GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 101
           KT  FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 70  KTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of ClCG05G023140 vs. NCBI nr
Match: gi|700196858|gb|KGN52035.1| (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23
Identity = 69/101 (68.32%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MPSSSSSSSSSSSFFQCKLNPIAIFIFLLLL-SGFSSATRPGKMMEHHGMNNSDMSNSYF 60
           MPSSSS +S           PI I + LLLL SG SSATRPGK ME   MN  DMSNSY 
Sbjct: 1   MPSSSSQTSI----------PIFILLLLLLLLSGLSSATRPGKTMEFTEMN-PDMSNSY- 60

Query: 61  NYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 101
             KT FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  --KTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of ClCG05G023140 vs. NCBI nr
Match: gi|567890473|ref|XP_006437757.1| (hypothetical protein CICLE_v10033191mg [Citrus clementina])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 1  MPSSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFN 60
          M SSSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   
Sbjct: 1  MASSSSSSSSKCLHISCK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKL 60

Query: 61 YKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 97
          +KT FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 61 HKTSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of ClCG05G023140 vs. NCBI nr
Match: gi|694311061|ref|XP_009356058.1| (PREDICTED: protein IDA [Pyrus x bretschneideri])

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 4   SSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMM----EHHGMNNSDMSNSYF 63
           +S+SS  S  F   K     + + L LL G  +ATR GK +    +   + N D + ++ 
Sbjct: 2   ASTSSLKSKHFSSGKNTVFVVLLVLNLLMGCCTATRLGKTLVVSLDGKALMNLDHTKTFN 61

Query: 64  --NYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 101
              ++TGFRY GQ FS+ P+G  IPPSGPS RHNSVVDS P N
Sbjct: 62  PRKHETGFRYKGQIFSYFPKGTIIPPSGPSKRHNSVVDSTPGN 104

[Close]

BLAST of ClCG05G023140 vs. NCBI nr
Match: gi|641851259|gb|KDO70130.1| (hypothetical protein CISIN_1g038148mg [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 3  SSSSSSSSSSSFFQCKLNPIAIFIFLLLLSGFSSATRPGKMMEHHGMNNSDMSNSYFNYK 62
          +SSSSSSS      CK     +F+ +++L G   A RPG  M+         S +   +K
Sbjct: 2  ASSSSSSSKCLHIACK-QIYLLFLIVIVLIGSCEAARPGTTMD---------SVNVKLHK 61

Query: 63 TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 97
          T FRY  Q F+FLP+G PIPPSGPS RHNSVVDS
Sbjct: 62 TSFRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 85

The following BLAST results are available for this feature:

BLAST of ClCG05G023140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07_CUCSA	9.5e-24	68.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1	[more]
F6HF28_VITVI	1.1e-16	49.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=...	[more]
V4TCI5_9ROSI	9.9e-13	48.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1	[more]
A0A067FVE8_CITSI	8.4e-12	47.87	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038148mg PE=4 SV=1	[more]
A0A061EC53_THECC	2.4e-11	45.92	Membrane lipoprotein, putative OS=Theobroma cacao GN=TCM_011888 PE=4 SV=1	[more]

BLAST of ClCG05G023140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68765.1	3.6e-06	37.18	Putative membrane lipoprotein	[more]

BLAST of ClCG05G023140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091413\|ref\|XP_008446537.1\|	2.0e-27	74.00	PREDICTED: protein IDA [Cucumis melo]	[more]
gi\|700196858\|gb\|KGN52035.1\|	1.4e-23	68.32	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
gi\|567890473\|ref\|XP_006437757.1\|	1.4e-12	48.96	hypothetical protein CICLE_v10033191mg [Citrus clementina]	[more]
gi\|694311061\|ref\|XP_009356058.1\|	9.2e-12	43.69	PREDICTED: protein IDA [Pyrus x bretschneideri]	[more]
gi\|641851259\|gb\|KDO70130.1\|	1.2e-11	47.87	hypothetical protein CISIN_1g038148mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010227	floral organ abscission
biological_process	GO:0010102	lateral root morphogenesis
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0009723	response to ethylene
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005102	receptor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G023140.1	ClCG05G023140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 4..100 score: 3.2
None	No IPR available	PANTHER	PTHR33599:SF3	SUBFAMILY NOT NAMED	coord: 4..100 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G023140	Csa5G608230	Cucumber (Chinese Long) v2	cuwcgB394
ClCG05G023140	MELO3C012204	Melon (DHL92) v3.5.1	mewcgB062
ClCG05G023140	Cla020355	Watermelon (97103) v1	wcgwmB285
ClCG05G023140	Cla97C05G105040	Watermelon (97103) v2	wcgwmbB229
ClCG05G023140	CSPI05G24840	Wild cucumber (PI 183967)	cpiwcgB412
ClCG05G023140	Cucsa.284020	Cucumber (Gy14) v1	cgywcgB498
ClCG05G023140	CmoCh04G016180	Cucurbita moschata (Rifu)	cmowcgB654
ClCG05G023140	Lsi04G003000	Bottle gourd (USVL1VR-Ls)	lsiwcgB283
ClCG05G023140	Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	cpewcgB388
ClCG05G023140	Cp4.1LG09g02700	Cucurbita pepo (Zucchini)	cpewcgB045
ClCG05G023140	MELO3C012204.2	Melon (DHL92) v3.6.1	medwcgB061
ClCG05G023140	Carg01805	Silver-seed gourd	carwcgB0816
ClCG05G023140	CsaV3_5G033860	Cucumber (Chinese Long) v3	cucwcgB415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G023140	Cucumber (Chinese Long) v3	cucwcgB069
ClCG05G023140	Cucumber (Chinese Long) v3	cucwcgB071
ClCG05G023140	Watermelon (97103) v2	wcgwmbB228
ClCG05G023140	Watermelon (97103) v2	wcgwmbB233
ClCG05G023140	Wax gourd	wcgwgoB467
ClCG05G023140	Watermelon (Charleston Gray)	wcgwcgB070
ClCG05G023140	Watermelon (Charleston Gray)	wcgwcgB155
ClCG05G023140	Cucurbita maxima (Rimu)	cmawcgB124
ClCG05G023140	Cucurbita maxima (Rimu)	cmawcgB364
ClCG05G023140	Cucurbita maxima (Rimu)	cmawcgB655
ClCG05G023140	Cucurbita moschata (Rifu)	cmowcgB358
ClCG05G023140	Cucurbita moschata (Rifu)	cmowcgB657
ClCG05G023140	Wild cucumber (PI 183967)	cpiwcgB065
ClCG05G023140	Wild cucumber (PI 183967)	cpiwcgB067
ClCG05G023140	Cucumber (Chinese Long) v2	cuwcgB063
ClCG05G023140	Cucumber (Chinese Long) v2	cuwcgB064
ClCG05G023140	Cucumber (Chinese Long) v2	cuwcgB397
ClCG05G023140	Melon (DHL92) v3.5.1	mewcgB157
ClCG05G023140	Melon (DHL92) v3.5.1	mewcgB249
ClCG05G023140	Watermelon (97103) v1	wcgwmB297
ClCG05G023140	Watermelon (97103) v1	wcgwmB304
ClCG05G023140	Watermelon (97103) v1	wcgwmB308
ClCG05G023140	Cucurbita pepo (Zucchini)	cpewcgB400
ClCG05G023140	Bottle gourd (USVL1VR-Ls)	lsiwcgB245
ClCG05G023140	Bottle gourd (USVL1VR-Ls)	lsiwcgB367
ClCG05G023140	Cucumber (Gy14) v2	cgybwcgB059
ClCG05G023140	Cucumber (Gy14) v2	cgybwcgB359
ClCG05G023140	Cucumber (Gy14) v2	cgybwcgB363
ClCG05G023140	Melon (DHL92) v3.6.1	medwcgB029
ClCG05G023140	Melon (DHL92) v3.6.1	medwcgB241
ClCG05G023140	Silver-seed gourd	carwcgB0580
ClCG05G023140	Silver-seed gourd	carwcgB1016