CmoCh04G016180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein IDA-LIKE 1
Location	Cmo_Chr04 : 8255171 .. 8255437 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

mRNA sequence

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Coding sequence (CDS)

ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGGACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCCCTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA

Homology

[Close]

BLAST of CmoCh04G016180 vs. Swiss-Prot
Match: IDA_ARATH (Protein IDA OS=Arabidopsis thaliana GN=IDA PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-09
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 16 FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPS 75
          FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS
Sbjct: 13 FVLFLAASSSCVAAARIGATM--EMKKNIKRLTFKNS-----HIFGYLPKGVPIPPSAPS 72

Query: 76 DRHNSLVDSLP 87
           RHNS V+SLP
Sbjct: 73 KRHNSFVNSLP 76

[Close]

BLAST of CmoCh04G016180 vs. TrEMBL
Match: A0A0A0KR07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-22
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 2  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTF 61
          + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+SN +YKT FRY GQTF
Sbjct: 1  MPSSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTF 60

Query: 62 SYLPRGVPIPPSGPSDRHNSLVDSLPPS 89
          S+LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 61 SFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of CmoCh04G016180 vs. TrEMBL
Match: A0A0D2T2V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G187700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 9   SSSLSAIFVLLLLLVSGFCS-ATRPGKTMGHELKPDLSNF--NYKTGFRYVGQTFSYLPR 68
           S+ +  +F++ LL  S F   ATRPGKT+  +    ++ F   Y+TGFRY GQ F++ P+
Sbjct: 23  SNIIYVVFLITLLAGSSFARPATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPK 82

Query: 69  GVPIPPSGPSDRHNSLVDS 85
           G+PIPPSGPS RHNS+VDS
Sbjct: 83  GIPIPPSGPSKRHNSVVDS 101

[Close]

BLAST of CmoCh04G016180 vs. TrEMBL
Match: M5XH24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017234mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 17 VLLLLLVSGFCSATRPGKTM---GHELKPDLSNFN------YKTGFRYVGQTFSYLPRGV 76
          V L+LL+ G CS  R GKT+    H++  +L +        ++TGF+Y GQ FS+ P+G 
Sbjct: 4  VSLILLLIGSCSGARLGKTVILADHKVLLNLEHTKTLNPRTHRTGFQYRGQVFSFFPKGT 63

Query: 77 PIPPSGPSDRHNSLVDSLP 87
          PIPPSGPS RHNS+VDS P
Sbjct: 64 PIPPSGPSKRHNSVVDSTP 82

[Close]

BLAST of CmoCh04G016180 vs. TrEMBL
Match: V4TCI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 1


Query: 1  MLSSSSSSSS-----SLSAIFVLLLLLVS--GFCSATRPGKTMGHELKPDLSNFN-YKTG 60
          M SSSSSSSS     S   I++L L+++   G C A RPG TM      D  N   +KT 
Sbjct: 1  MASSSSSSSSKCLHISCKQIYLLFLIVIVLIGSCEAARPGTTM------DSVNVKLHKTS 60

Query: 61 FRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS 85
          FRY  Q F++LP+G PIPPSGPS RHNS+VDS
Sbjct: 61 FRYKRQRFNFLPKGTPIPPSGPSKRHNSVVDS 86

[Close]

BLAST of CmoCh04G016180 vs. TrEMBL
Match: F6HF28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 3   SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKP--DLSNFN--- 62
           SS SSSSSS S            V +  LV G C+ATRPG+ M  E +   + ++ N   
Sbjct: 7   SSPSSSSSSKSPSMHLSCKPICLVFIFFLVVGSCTATRPGRMMMAEQEESNERAHMNPQE 66

Query: 63  --YKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 87
             +KT F+  GQ F++ P+GVPIPPSGPS RHNS VDS P
Sbjct: 67  HKFKTSFQQGGQMFNFFPKGVPIPPSGPSKRHNSFVDSTP 106

[Close]

BLAST of CmoCh04G016180 vs. TAIR10
Match: AT1G68765.1 (AT1G68765.1 Putative membrane lipoprotein)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1


Query: 16 FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPS 75
          FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS
Sbjct: 13 FVLFLAASSSCVAAARIGATM--EMKKNIKRLTFKNS-----HIFGYLPKGVPIPPSAPS 72

Query: 76 DRHNSLVDSLP 87
           RHNS V+SLP
Sbjct: 73 KRHNSFVNSLP 76

[Close]

BLAST of CmoCh04G016180 vs. NCBI nr
Match: gi|659091413|ref|XP_008446537.1| (PREDICTED: protein IDA [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.8e-23
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 3   SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKT-G 62
           SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+SN NYKT  
Sbjct: 10  SSSSSSSSSSSSFQFKQNSIPIFILLLLLLSGFSSATRPGGTMEF---PDMSNSNYKTTA 69

Query: 63  FRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 89
           FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 70  FRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of CmoCh04G016180 vs. NCBI nr
Match: gi|700196858|gb|KGN52035.1| (hypothetical protein Csa_5G608230 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 2  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTF 61
          + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+SN +YKT FRY GQTF
Sbjct: 1  MPSSSSQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSN-SYKTAFRYGGQTF 60

Query: 62 SYLPRGVPIPPSGPSDRHNSLVDSLPPS 89
          S+LP+GVPIPPSGPSDRHNS+VDSLPP+
Sbjct: 61 SFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of CmoCh04G016180 vs. NCBI nr
Match: gi|694417107|ref|XP_009336645.1| (PREDICTED: protein IDA-like [Pyrus x bretschneideri])

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-12
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 3   SSSSSSSSSLSAIFVLLLLL--VSGFCSATRPGKTMGHELK-------PDLSNFN---YK 62
           SS S   SS   +FV+LL+L  ++G C+ATR  KT+   L             FN   ++
Sbjct: 6   SSKSKHLSSCKTVFVVLLVLNLLTGSCTATRLAKTLVVRLDGKALMNLDHAKTFNPRKHE 65

Query: 63  TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 87
           TGFRY GQ FSY P+G PIPPSGPS RHNS VDS P
Sbjct: 66  TGFRYRGQIFSYFPKGTPIPPSGPSKRHNSAVDSTP 101

[Close]

BLAST of CmoCh04G016180 vs. NCBI nr
Match: gi|657994058|ref|XP_008389328.1| (PREDICTED: protein IDA [Malus domestica])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 3   SSSSSSSSSLSAIFVLLLLL--VSGFCSATRPGKTMGHELK-------PDLSNFN---YK 62
           S  S   SS   +FVLLL+L  ++G C+ATR  KT+   L             FN   ++
Sbjct: 6   SLKSKHLSSCKTVFVLLLVLNLLTGSCTATRLAKTVVVRLDGKALMNLDHAKTFNPRKHE 65

Query: 63  TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 87
           TGFRY GQ FSY P+G PIPPSGPS+RHNS VDS P
Sbjct: 66  TGFRYRGQIFSYFPKGTPIPPSGPSNRHNSAVDSTP 101

[Close]

BLAST of CmoCh04G016180 vs. NCBI nr
Match: gi|763783738|gb|KJB50809.1| (hypothetical protein B456_008G187700 [Gossypium raimondii])

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 9   SSSLSAIFVLLLLLVSGFCS-ATRPGKTMGHELKPDLSNF--NYKTGFRYVGQTFSYLPR 68
           S+ +  +F++ LL  S F   ATRPGKT+  +    ++ F   Y+TGFRY GQ F++ P+
Sbjct: 23  SNIIYVVFLITLLAGSSFARPATRPGKTIIVDDTVSMTVFPRKYETGFRYQGQMFNFFPK 82

Query: 69  GVPIPPSGPSDRHNSLVDS 85
           G+PIPPSGPS RHNS+VDS
Sbjct: 83  GIPIPPSGPSKRHNSVVDS 101

The following BLAST results are available for this feature:

BLAST of CmoCh04G016180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IDA_ARATH	6.4e-09	47.89	Protein IDA OS=Arabidopsis thaliana GN=IDA PE=1 SV=1	[more]

BLAST of CmoCh04G016180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR07_CUCSA	3.5e-22	69.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608230 PE=4 SV=1	[more]
A0A0D2T2V4_GOSRA	2.1e-11	50.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G187700 PE=4 SV=1	[more]
M5XH24_PRUPE	6.2e-11	49.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017234mg PE=4 SV=1	[more]
V4TCI5_9ROSI	1.1e-10	52.17	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033191mg PE=4 SV=1	[more]
F6HF28_VITVI	1.1e-10	47.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02790 PE=4 SV=...	[more]

BLAST of CmoCh04G016180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68765.1	3.6e-10	47.89	Putative membrane lipoprotein	[more]

BLAST of CmoCh04G016180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091413\|ref\|XP_008446537.1\|	7.8e-23	68.75	PREDICTED: protein IDA [Cucumis melo]	[more]
gi\|700196858\|gb\|KGN52035.1\|	5.1e-22	69.32	hypothetical protein Csa_5G608230 [Cucumis sativus]	[more]
gi\|694417107\|ref\|XP_009336645.1\|	8.1e-12	50.00	PREDICTED: protein IDA-like [Pyrus x bretschneideri]	[more]
gi\|657994058\|ref\|XP_008389328.1\|	1.4e-11	50.00	PREDICTED: protein IDA [Malus domestica]	[more]
gi\|763783738\|gb\|KJB50809.1\|	3.1e-11	50.63	hypothetical protein B456_008G187700 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016180.1	CmoCh04G016180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33599	FAMILY NOT NAMED	coord: 1..86 score: 2.3
None	No IPR available	PANTHER	PTHR33599:SF3	SUBFAMILY NOT NAMED	coord: 1..86 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G016180	Cucsa.284020	Cucumber (Gy14) v1	cgycmoB0793
CmoCh04G016180	Csa5G608230	Cucumber (Chinese Long) v2	cmocuB741
CmoCh04G016180	MELO3C012204	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G016180	ClCG05G023140	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G016180	CSPI05G24840	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G016180	Cp4.1LG01g13370	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016180	MELO3C012204.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G016180	CsaV3_5G033860	Cucumber (Chinese Long) v3	cmocucB0877

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016180	Silver-seed gourd	carcmoB0814
CmoCh04G016180	Silver-seed gourd	carcmoB1138
CmoCh04G016180	Silver-seed gourd	carcmoB1397
CmoCh04G016180	Cucumber (Chinese Long) v3	cmocucB0803
CmoCh04G016180	Watermelon (97103) v2	cmowmbB729
CmoCh04G016180	Watermelon (97103) v2	cmowmbB745
CmoCh04G016180	Wax gourd	cmowgoB0892
CmoCh04G016180	Cucurbita moschata (Rifu)	cmocmoB126
CmoCh04G016180	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G016180	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G016180	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016180	Watermelon (97103) v1	cmowmB693
CmoCh04G016180	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G016180	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G016180	Bottle gourd (USVL1VR-Ls)	cmolsiB686
CmoCh04G016180	Cucumber (Gy14) v2	cgybcmoB123
CmoCh04G016180	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G016180	Melon (DHL92) v3.6.1	cmomedB752