Cp4.1LG01g08200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g08200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5058885 .. 5059483 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCAAAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATTATCATCCAAAACTTTTGCTTACACTTTTTTTTAAACTGGGTTTTGTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGTTTGTAATTTTTTAGTGTTTTTACATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTTGGGGTTTTGATTTTGTAGGGAAAAGAATTTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCAAAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAATTTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCAAAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGAAAAGAATTTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISRICTQKQVDQDQSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEFEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Homology
[Close]
BLAST of Cp4.1LG01g08200 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 99/177 (55.93%), Postives = 116/177 (65.54%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVD------QDQSSWT--SSMDDLLLFD-----HSKTI--------- 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD     HS +          
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SYHFQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  AM
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR--AM 120

Query: 121 INQTKHKGKEFEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           +NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 MNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG01g08200 vs. TrEMBL
Match: F6H9B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00230 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 

Query: 53  DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEFEEFGEVEDRIEVG 112
           DD L+DTA+SP     + D+  L    K++      I+ +K KG  + +  E  D  EVG
Sbjct: 104 DDALEDTASSPVTSPKVFDLRQLDMNPKEKA-----IDISKEKGSSYRQTNERGD--EVG 163

Query: 113 FVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
           F+GRD++C T LK  GLCLVP+SM ++Y G
Sbjct: 164 FIGRDSDC-TELKKRGLCLVPLSMIVDYLG 185

[Close]
BLAST of Cp4.1LG01g08200 vs. TrEMBL
Match: B9SA47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 30  LLFDHSKTIS-YHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 89
           L  D++K+ S   F+      +  DD L+DTA+SP +   + D+    +K  KQ+ +   
Sbjct: 94  LPIDNNKSYSRLSFKKRKTKGALVDDSLEDTASSPVNSPKVYDIMNQFNKSIKQRDMDV- 153

Query: 90  INQTKHKGKEFEEFGEV-EDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
              ++ KG       ++ +DR  +GF+GR+++ +T LK  GLCLVPVSM +NYFG
Sbjct: 154 ---SQDKGNNITSSDQLLDDRSNLGFLGRESD-NTELKKRGLCLVPVSMVVNYFG 203

[Close]
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-33
Identity = 99/177 (55.93%), Postives = 116/177 (65.54%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVD------QDQSSWT--SSMDDLLLFD-----HSKTI--------- 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD     HS +          
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SYHFQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  AM
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR--AM 120

Query: 121 INQTKHKGKEFEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           +NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 MNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 95/177 (53.67%), Postives = 111/177 (62.71%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVDQ------DQSSWT--SSMDDLLL--------------FDHSKTI 60
           MENSA SRIC+  + D+      +  SW+  SSMDDLL+              F      
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SYHFQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  A 
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR--AT 120

Query: 121 INQTKHKGKEFEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 INQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 89/154 (57.79%), Postives = 103/154 (66.88%), Query Frame = 1 

Query: 18  DQSSWT--SSMDDLLLFD-----HSKTI---------SYHFQNAAVFSSSD--------- 77
           +  SW+  SSMDDLL+FD     HS +          S      A  S+S          
Sbjct: 4   EDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMA 63

Query: 78  -DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEFEEFGEVEDRI-E 137
            DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  AM+NQTKHKG   E++GEVEDRI E
Sbjct: 64  ADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR--AMMNQTKHKGNGSEDYGEVEDRITE 123

Query: 138 VGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           VGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 124 VGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 155

[Close]
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match: gi|297735971|emb|CBI23945.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 

Query: 53  DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEFEEFGEVEDRIEVG 112
           DD L+DTA+SP     + D+  L    K++      I+ +K KG  + +  E  D  EVG
Sbjct: 159 DDALEDTASSPVTSPKVFDLRQLDMNPKEKA-----IDISKEKGSSYRQTNERGD--EVG 218

Query: 113 FVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
           F+GRD++C T LK  GLCLVP+SM ++Y G
Sbjct: 219 FIGRDSDC-TELKKRGLCLVPLSMIVDYLG 240

[Close]
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match: gi|225461064|ref|XP_002279003.1| (PREDICTED: uncharacterized protein LOC100258838 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 

Query: 53  DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEFEEFGEVEDRIEVG 112
           DD L+DTA+SP     + D+  L    K++      I+ +K KG  + +  E  D  EVG
Sbjct: 104 DDALEDTASSPVTSPKVFDLRQLDMNPKEKA-----IDISKEKGSSYRQTNERGD--EVG 163

Query: 113 FVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
           F+GRD++C T LK  GLCLVP+SM ++Y G
Sbjct: 164 FIGRDSDC-TELKKRGLCLVPLSMIVDYLG 185

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g08200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F7_CUCSA1.4e-3355.93Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1[more]
F6H9B3_VITVI4.4e-0642.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00230 PE=4 SV=... [more]
B9SA47_RICCO5.7e-0635.65Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1[more]
BLAST of Cp4.1LG01g08200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g08200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201012|gb|KGN56145.1|2.1e-3355.93hypothetical protein Csa_3G078270 [Cucumis sativus][more]
gi|659126934|ref|XP_008463437.1|2.1e-3053.67PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo][more]
gi|778688383|ref|XP_011652737.1|2.4e-2957.79PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus][more]
gi|297735971|emb|CBI23945.3|6.3e-0642.22unnamed protein product [Vitis vinifera][more]
gi|225461064|ref|XP_002279003.1|6.3e-0642.22PREDICTED: uncharacterized protein LOC100258838 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010089 xylem development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08200.1Cp4.1LG01g08200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33974FAMILY NOT NAMEDcoord: 51..142
score: 6.8
NoneNo IPR availablePANTHERPTHR33974:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21coord: 51..142
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g08200CmaCh04G009430Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g08200CmoCh04G010130Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g08200Csa3G078270Cucumber (Chinese Long) v2cpecuB393
Cp4.1LG01g08200CSPI03G05290Wild cucumber (PI 183967)cpecpiB392
Cp4.1LG01g08200Lsi05G006180Bottle gourd (USVL1VR-Ls)cpelsiB370
Cp4.1LG01g08200CsaV3_3G005300Cucumber (Chinese Long) v3cpecucB0491
Cp4.1LG01g08200CsGy3G005370Cucumber (Gy14) v2cgybcpeB369
Cp4.1LG01g08200Carg00056Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g08200Cucurbita pepo (Zucchini)cpecpeB007
Cp4.1LG01g08200Cucumber (Gy14) v1cgycpeB0077
Cp4.1LG01g08200Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g08200Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g08200Cucurbita moschata (Rifu)cmocpeB317
Cp4.1LG01g08200Bottle gourd (USVL1VR-Ls)cpelsiB368
Cp4.1LG01g08200Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g08200Watermelon (97103) v1cpewmB386
Cp4.1LG01g08200Melon (DHL92) v3.5.1cpemeB409
Cp4.1LG01g08200Melon (DHL92) v3.5.1cpemeB413
Cp4.1LG01g08200Melon (DHL92) v3.6.1cpemedB484
Cp4.1LG01g08200Silver-seed gourdcarcpeB1110
Cp4.1LG01g08200Wax gourdcpewgoB0484