CmaCh04G009430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G009430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 4849110 .. 4849716 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATCATCATCCAAAACTTCTGTTTACATCTTTTAAAAACTGGGTTTTTTTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGTTTGTAATTTTTGAGTGTTTTTATATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTGGGGTTCTGGTTTTGTAGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCATCTCCAAAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGCTGGACTTCCTCCATGGACGACCTTCTCTTATTCGACTACTCTAAAACAACTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGATGACGATGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCAGCAGCACACTGCCATGATCAATCAAACAAAACACAGGGGAAAAGAAATTGAGGAATTTGGGGAGGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISKICTQKQVDQDHSSWTSSMDDLLLFDYSKTTSYHFQNAAVFSSSDDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG

Homology

[Close]

BLAST of CmaCh04G009430 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 100/179 (55.87%), Postives = 119/179 (66.48%), Query Frame = 1


Query: 1   MENSAISKICTQKQVD------QDHSSWT--SSMDDLLLFDYSKTT---SYH-FQNAAVF 60
           MENSA S+IC+ ++ D       +  SW+  SSMDDLL+FD   TT   SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           AM+NQTKH+G   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmaCh04G009430 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 100/179 (55.87%), Postives = 119/179 (66.48%), Query Frame = 1


Query: 1   MENSAISKICTQKQVD------QDHSSWT--SSMDDLLLFDYSKTT---SYH-FQNAAVF 60
           MENSA S+IC+ ++ D       +  SW+  SSMDDLL+FD   TT   SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSSDD-------------------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           SS+ D                   DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           AM+NQTKH+G   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmaCh04G009430 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 5.8e-31
Identity = 90/151 (59.60%), Postives = 104/151 (68.87%), Query Frame = 1


Query: 21  SWTSSMDDLLLFDYSKTT---SYH-FQNAAVFSSSDD-------------------DDDL 80
           S +SSMDDLL+FD   TT   SY  FQ +   SS+ D                   DDDL
Sbjct: 9   STSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDL 68

Query: 81  QDTATSPPHPSIISDMDGLSSKQKKQQQQQHTAMINQTKHRGKEIEEFGEVEDRI-EVGF 140
           +DTATSPPHPSI+S MD  SSKQ+K+Q+    AM+NQTKH+G   E++GEVEDRI EVGF
Sbjct: 69  EDTATSPPHPSIVSKMDERSSKQQKKQR----AMMNQTKHKGNGSEDYGEVEDRITEVGF 128

Query: 141 VGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 129 VGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 155

[Close]

BLAST of CmaCh04G009430 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 9.8e-31
Identity = 95/179 (53.07%), Postives = 113/179 (63.13%), Query Frame = 1


Query: 1   MENSAISKICTQKQVDQ------DHSSWT--SSMDDLLLFDYSKT--------------T 60
           MENSA S+IC+  + D+      +  SW+  SSMDDLL+FD   T               
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SYHFQNAAVFSSSD---------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQQQHT 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 AMINQTKHRGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           A INQTKH+GK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

The following BLAST results are available for this feature:

BLAST of CmaCh04G009430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F7_CUCSA	1.0e-34	55.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1	[more]

BLAST of CmaCh04G009430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G009430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201012\|gb\|KGN56145.1\|	1.5e-34	55.87	hypothetical protein Csa_3G078270 [Cucumis sativus]	[more]
gi\|778688383\|ref\|XP_011652737.1\|	5.8e-31	59.60	PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus]	[more]
gi\|659126934\|ref\|XP_008463437.1\|	9.8e-31	53.07	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010089	xylem development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G009430.1	CmaCh04G009430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33974	FAMILY NOT NAMED	coord: 52..145 score: 7.2
None	No IPR available	PANTHER	PTHR33974:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21	coord: 52..145 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G009430	CmoCh04G010130	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G009430	Cp4.1LG01g08200	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G009430	Carg00056	Silver-seed gourd	carcmaB0948

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G009430	Wax gourd	cmawgoB0821
CmaCh04G009430	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G009430	Cucumber (Gy14) v1	cgycmaB0081
CmaCh04G009430	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G009430	Cucurbita moschata (Rifu)	cmacmoB704
CmaCh04G009430	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G009430	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G009430	Melon (DHL92) v3.5.1	cmameB693
CmaCh04G009430	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G009430	Watermelon (97103) v1	cmawmB659
CmaCh04G009430	Cucurbita pepo (Zucchini)	cmacpeB692
CmaCh04G009430	Bottle gourd (USVL1VR-Ls)	cmalsiB685
CmaCh04G009430	Bottle gourd (USVL1VR-Ls)	cmalsiB689
CmaCh04G009430	Bottle gourd (USVL1VR-Ls)	cmalsiB691
CmaCh04G009430	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G009430	Melon (DHL92) v3.6.1	cmamedB780
CmaCh04G009430	Silver-seed gourd	carcmaB1100
CmaCh04G009430	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G009430	Watermelon (97103) v2	cmawmbB718