CmoCh04G010130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G010130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CTD small phosphatase-like protein 2, putative
Location	Cmo_Chr04 : 5088491 .. 5089098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATTATCATCCAAAACTTCTGTTTACATCTTTTAAAAACTGGGTTTTTTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGTTTGTAATTTTTTTAGTGTTTTTACATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTTGGGGTTTTGGTTTTGTAGGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCGGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAGGATCACAGTAGCTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCTGCAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAAGGAAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Homology

[Close]

BLAST of CmoCh04G010130 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-33
Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 1


Query: 1   MENSAISRICTQKQVD------QDHSSWT--SSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSS--------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS+                     DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.6e-33
Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = 1


Query: 1   MENSAISRICTQKQVD------QDHSSWT--SSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSS--------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           SS+                     DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            AM+NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -AMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 94/180 (52.22%), Postives = 110/180 (61.11%), Query Frame = 1


Query: 1   MENSAISRICTQKQVDQ------DHSSWT--SSMDDLLL--------------FDHSKTI 60
           MENSA SRIC+  + D+      +  SW+  SSMDDLL+              F      
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SYHFQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQLQQQQL 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+ +    
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR---- 120

Query: 121 SAMINQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
            A INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 -ATINQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]

BLAST of CmoCh04G010130 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-29
Identity = 88/152 (57.89%), Postives = 101/152 (66.45%), Query Frame = 1


Query: 21  SWTSSMDDLLLFDHSKTI---SYH-FQNAAVFSSS--------------------DDDDL 80
           S +SSMDDLL+FD   T    SY  FQ +   SS+                     DDDL
Sbjct: 9   STSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDL 68

Query: 81  QDTATSPPHPSIISDMDGLSSKQKKQLQQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVG 140
           +DTATSPPHPSI+S MD  SSKQ+K+ +     AM+NQTKHKG   E++GEVEDRI EVG
Sbjct: 69  EDTATSPPHPSIVSKMDERSSKQQKKQR-----AMMNQTKHKGNGSEDYGEVEDRITEVG 128

Query: 141 FVGRDNN---CSTGLKNIGLCLVPVSMAINYF 145
           FVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 129 FVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 155

The following BLAST results are available for this feature:

BLAST of CmoCh04G010130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F7_CUCSA	2.5e-33	55.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1	[more]

BLAST of CmoCh04G010130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201012\|gb\|KGN56145.1\|	3.6e-33	55.00	hypothetical protein Csa_3G078270 [Cucumis sativus]	[more]
gi\|659126934\|ref\|XP_008463437.1\|	2.4e-29	52.22	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo]	[more]
gi\|778688383\|ref\|XP_011652737.1\|	3.2e-29	57.89	PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010089	xylem development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G010130.1	CmoCh04G010130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33974	FAMILY NOT NAMED	coord: 51..145 score: 6.7
None	No IPR available	PANTHER	PTHR33974:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21	coord: 51..145 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G010130	CmaCh04G009430	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G010130	Cp4.1LG01g08200	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G010130	Carg00056	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G010130	Silver-seed gourd	carcmoB1070
CmoCh04G010130	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G010130	Watermelon (97103) v2	cmowmbB689
CmoCh04G010130	Wax gourd	cmowgoB0817
CmoCh04G010130	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G010130	Cucurbita moschata (Rifu)	cmocmoB290
CmoCh04G010130	Cucumber (Gy14) v1	cgycmoB0076
CmoCh04G010130	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G010130	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G010130	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G010130	Melon (DHL92) v3.5.1	cmomeB684
CmoCh04G010130	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G010130	Watermelon (97103) v1	cmowmB653
CmoCh04G010130	Cucurbita pepo (Zucchini)	cmocpeB644
CmoCh04G010130	Bottle gourd (USVL1VR-Ls)	cmolsiB678
CmoCh04G010130	Bottle gourd (USVL1VR-Ls)	cmolsiB682
CmoCh04G010130	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G010130	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G010130	Melon (DHL92) v3.6.1	cmomedB776