CsaV3_3G005300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G005300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 4423416 .. 4424564 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGGTACTTTCTTTTAGCAAATTAATATCACATTTGTGAATAATTTCAGAAGTAATTTAAATTTCTTTTTCACGAACATATTTTCTTTCGTTGTTATCACAAATAATTGAAAATTTTTTAGGTAAAATTTGAAAATCAGTAGCATTTTTCAAAACTAATTATTGTTTGCTTTTAGCTTCGAGAGAATTCAAATGTTTTCTTCAAAAAAGATATGGAAACAACAGTATGAAAGGGTGAGATAACAAAAATAGTTTTTTTAATAACTATTTCATATTTTTTTTTTAAAAAAAACTAAATTTATTTTAAGTAAAAAAAAAGTTCACTTCTTAGCCAAATTTCAAAACAAAGTAAGCTTTTTTAGTTTTCAAATTTGAAGTACTTTTTCAAGCTTGTCTGATCACATCAACCCCTGTAATGATTTCCTTTCCATTAGGAAAACAAGAAAGTAGTTTTTATATACATATATTAACTTGGTTAATTAATTTGGCCTTCTAATCAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAATGATGAATCAAACAAAGCACAAGGTTTCTAATTTTTACCTTAAAAAATATGTTGAGTTCGTTTTGATATTATAATAACATCATTATTTGAGATGCAATATATATAATCTAACTGTGATTTTTGGGGCTATGCTTTATTTTTGTAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

mRNA sequence

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAATGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAATGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Protein sequence

MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA

Homology

[Close]

BLAST of CsaV3_3G005300 vs. NCBI nr
Match: KGN56145.1 (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CsaV3_3G005300 vs. NCBI nr
Match: XP_008463437.1 (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 7.0e-35
Identity = 146/176 (82.95%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR               XX
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    N
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CsaV3_3G005300 vs. NCBI nr
Match: XP_011652737.1 (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.0e-30
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 21  MFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 80
           MFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 81  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQTKHKGNGSEDYGEVEDRIT 140
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQTKHKGNGSEDYGEVEDRIT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQTKHKGNGSEDYGEVEDRIT 120

Query: 141 EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 156

[Close]

BLAST of CsaV3_3G005300 vs. NCBI nr
Match: XP_022941575.1 (uncharacterized protein LOC111446888 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 4.7e-15
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 120 NQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 176
           NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 93  NQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 144

[Close]

BLAST of CsaV3_3G005300 vs. NCBI nr
Match: XP_022989755.1 (uncharacterized protein LOC111486825 [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 120 NQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 176
           NQTKH+G   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 93  NQTKHRGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 144

[Close]

BLAST of CsaV3_3G005300 vs. TrEMBL
Match: tr|A0A0A0L2F7|A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.9e-43
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CsaV3_3G005300 vs. TrEMBL
Match: tr|A0A1S3CKU1|A0A1S3CKU1_CUCME (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.6e-35
Identity = 146/176 (82.95%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRXXXXXXXXXXXXXXXXX 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR               XX
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    N
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

The following BLAST results are available for this feature:

BLAST of CsaV3_3G005300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56145.1	1.2e-42	100.00	hypothetical protein Csa_3G078270 [Cucumis sativus]	[more]
XP_008463437.1	7.0e-35	82.95	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo]	[more]
XP_011652737.1	4.0e-30	100.00	PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus]	[more]
XP_022941575.1	4.7e-15	82.14	uncharacterized protein LOC111446888 [Cucurbita moschata]	[more]
XP_022989755.1	1.1e-14	80.36	uncharacterized protein LOC111486825 [Cucurbita maxima]	[more]

BLAST of CsaV3_3G005300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G005300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G005300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2F7\|A0A0A0L2F7_CUCSA	7.9e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
tr\|A0A1S3CKU1\|A0A1S3CKU1_CUCME	4.6e-35	82.95	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010089	xylem development

Vocabulary: **INTERPRO**
Term	Definition
IPR039280	VUP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G005300.1	CsaV3_3G005300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..133
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	FAMILY NOT NAMED	coord: 25..175

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G005300	CSPI03G05290	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G005300	Cp4.1LG01g08200	Cucurbita pepo (Zucchini)	cpecucB0491
CsaV3_3G005300	CsGy3G005370	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G005300	Cla005290	Watermelon (97103) v1	cucwmB204
CsaV3_3G005300	MELO3C025402	Melon (DHL92) v3.5.1	cucmeB237
CsaV3_3G005300	ClCG10G005590	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G005300	Lsi05G006180	Bottle gourd (USVL1VR-Ls)	cuclsiB217
CsaV3_3G005300	MELO3C025402.2	Melon (DHL92) v3.6.1	cucmedB234
CsaV3_3G005300	Cla97C10G189830	Watermelon (97103) v2	cucwmbB182
CsaV3_3G005300	Bhi11G000506	Wax gourd	cucwgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G005300	Silver-seed gourd	carcucB0698
CsaV3_3G005300	Silver-seed gourd	carcucB0832
CsaV3_3G005300	Cucumber (Gy14) v1	cgycucB046
CsaV3_3G005300	Cucurbita maxima (Rimu)	cmacucB0026
CsaV3_3G005300	Cucurbita maxima (Rimu)	cmacucB0382
CsaV3_3G005300	Cucurbita maxima (Rimu)	cmacucB0837
CsaV3_3G005300	Cucurbita moschata (Rifu)	cmocucB0014
CsaV3_3G005300	Cucurbita moschata (Rifu)	cmocucB0372
CsaV3_3G005300	Cucurbita moschata (Rifu)	cmocucB0822
CsaV3_3G005300	Cucurbita pepo (Zucchini)	cpecucB0011