Cla005290 (gene) Watermelon (97103) v1

Overview
NameCla005290
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 6182865 .. 6184432 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACTCAGCCACCTCCAGAATCTGCACTTTCAACCAGGAGGATCAATGCCAAGCGACGTCGTTTCATGAGGACAGTAGTTGGAGCAGTTCTTCTTCCATGGACGATCTTCTCATGTTCGACGTTCAAAGTAGAACAACTCATTCACAACATCATAATAATATATTCTCCTCTTCTTCTTCTTATGAGTATTTTGAAACTCGTATTTGTTGTTCGTCCGCCGTGGATGGCGGAGCTCCGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCCGCGGATGATGATCTTGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGTATTTTTATTTAGCTATGGAAAAAAATATATATTATTTAATGTGCTACTCTATTCATTTATATTTCTGATTTGTTTGATGATTATTTGAATTTTTTTTTTAAAAAGCTTTTCAAATCTTTGATTTGTCTTCTACTTTTTCACGGATAATTTCAAATTTTTAAGTTGAGTTTTTGAAGACATAAAAAGTAGAGGTTTTCAAAACTTAGTTGTTGGTTTTGGAACTTTACTAAGAATTTAAATATTTCGTGAAAAAAAGATATAAAAACAATTGCAAAAAATGGTGAGCTAACGAGTTTAATTAAAAAAATAAAAAATGTTGAGTTTTGTTTAGTAGCCTCCTTTGATAACAATATTAATTTTTTTTTTTTTTTTTTGATGTTCGAAAATTAAATCTGTTTTTTCATAATTTCTAATAACGATTTGCATGTTTCTTAAGTGAAATAGTTGAAATTTTAAGCAAAATTCCAAAAGCAAAAACAAGTTTTTAAAAACTATTTTTTTAGTTTTCTAAATCTGGTCTGATTATTCAAAACGTTGGTAGAAAAGTAGATAATAAAGCAAGAAATATAAAGGTGGAATGAGTTTTTATAGAATTAATTTGAAAAAGTAAAAAATAAAATGATTACCAAACGAGACCCTTGAGTTTTTAGTTTTTGAAAATTATGTTTGTTTTCTCACAATTTTTTAACCATGATTTATATTTCCTATATAAACACTTAAATTCTTAGCCAAATTTAAAAAACAGAAACAAATTTTTAAAAACTAGGTCCTACATCAACCTCCTCCTCTAATGATTTTTCGCTATTAGGAGGGAAAACAAGTAGTTTATATTATATAATATACACATATATATATATATATTAACTTTGGTTAATTTGGTCTTTTAATCAGATGGGTCAACTTAGTTGTAAGCAAAAGAAGAAGCAAAGAGCAATGATCAATCAAACAAAGCACAAGGTTTCTAATTTTTACTTGAAAACATTGTGGGTTTTTGATGTTAGAACTTTATTATTTGAGATACATAATAATCTAACTGTGTTTTTGGGGTTATGTTGTATTTTTGAGGGAAAAGGAAGTAAAGATCACTATGGGGAAGTTGAAGATAGAATAATTGAAGTGGGTTTTGTGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTGGTTCCTGTATCCATGGCTCTCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCACCTCCAGAATCTGCACTTTCAACCAGGAGGATCAATGCCAAGCGACGTCGTTTCATGAGGACAGTAGTTGGAGCAGTTCTTCTTCCATGGACGATCTTCTCATGTTCGACGTTCAAAGTAGAACAACTCATTCACAACATCATAATAATATATTCTCCTCTTCTTCTTCTTATGAGTATTTTGAAACTCGTATTTGTTGTTCGTCCGCCGTGGATGGCGGAGCTCCGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCCGCGGATGATGATCTTGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGGAAAAGGAAGTAAAGATCACTATGGGGAAGTTGAAGATAGAATAATTGAAGTGGGTTTTGTGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTGGTTCCTGTATCCATGGCTCTCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCACCTCCAGAATCTGCACTTTCAACCAGGAGGATCAATGCCAAGCGACGTCGTTTCATGAGGACAGTAGTTGGAGCAGTTCTTCTTCCATGGACGATCTTCTCATGTTCGACGTTCAAAGTAGAACAACTCATTCACAACATCATAATAATATATTCTCCTCTTCTTCTTCTTATGAGTATTTTGAAACTCGTATTTGTTGTTCGTCCGCCGTGGATGGCGGAGCTCCGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCCGCGGATGATGATCTTGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGGAAAAGGAAGTAAAGATCACTATGGGGAAGTTGAAGATAGAATAATTGAAGTGGGTTTTGTGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTGGTTCCTGTATCCATGGCTCTCAATTATTTTGGTTAG

Protein sequence

MENSATSRICTFNQEDQCQATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETRICCSSAVDGGAPPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSKGKGSKDHYGEVEDRIIEVGFVGRDNKNYCSTGLKNIGLCLVPVSMALNYFG
Homology
[Close]
BLAST of Cla005290 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 129/188 (68.62%), Postives = 140/188 (74.47%), Query Frame = 1 

Query: 1   MENSATSRICTFNQEDQCQATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSS 60
           MENSATSRIC+  +ED C+   FHED SWS+SSSMDDLLMFDV++ TTHS          
Sbjct: 1   MENSATSRICSHREEDTCEPM-FHEDRSWSTSSSMDDLLMFDVRT-TTHS---------- 60

Query: 61  SSYEYFETRICCSSAVDGGAPPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE F+T +CCSSAVDGGA PSASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERS 120

Query: 121 ----------------KGKGSKDHYGEVEDRIIEVGFVGRD-NKNYCSTGLKNIGLCLVP 166
                           KG GS+D YGEVEDRI EVGFVGRD NKN+CSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRAMMNQTKHKGNGSED-YGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVP 175

[Close]
BLAST of Cla005290 vs. TrEMBL
Match: A0A061F6J6_THECC (CTD small phosphatase-like protein 2, putative OS=Theobroma cacao GN=TCM_030992 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 1 

Query: 19  QATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFE--TRICCSSAV 78
           +A  + E+SSW+       +    + ++ +     N+ FSS  +Y+     +   CS+A 
Sbjct: 17  EADEYPEESSWT-------MYFESLSNKNSDMDVENSSFSSDINYQSSSLVSDAACSAAG 76

Query: 79  --DGGAPPSAS----SFQRKR--RKMAADDDLEDTATSPPHPSIV--------------- 138
             D GAP   S    SF++++  +    DDDLEDTA+SP +   V               
Sbjct: 77  RHDFGAPLGKSCNRLSFKKRKCNKGRLVDDDLEDTASSPANSPKVCNLINHFDKNLKQKD 136

Query: 139 ----SKGKGSKDHYGEVEDRIIEVGFVGRDNKNYCSTGLKNIGLCLVPVSMALNYFG 167
               S+ KGS    G++++R  E+G +GR++     T LK +GLCLVP+SM ++Y G
Sbjct: 137 VMDKSQEKGSAS--GQIDERNDELGLIGREDDG---TELKKMGLCLVPLSMVVHYLG 181

[Close]
BLAST of Cla005290 vs. TrEMBL
Match: A0A059BM49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00971 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 53/170 (31.18%), Postives = 79/170 (46.47%), Query Frame = 1 

Query: 19  QATSFHEDSSWSSSSSMD--------DLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETRI 78
           Q+ +F  D  WSS+S  +        D LM + Q +   S  H++  SS    +   + +
Sbjct: 8   QSENFSCDERWSSNSGQESSWTPYFVDFLM-NGQEKNDSSTGHDD--SSLVVSDAATSAV 67

Query: 79  CCSSAVDGGAPPSASSFQRKRRKMAADDDLEDTATSPPH-PSIVSKGKGSKDHYGEVEDR 138
             S  +D        SF +KRRK   DD LEDTA+SP + P ++   K    + G+ ED+
Sbjct: 68  KKSVEIDQAGSRKRLSF-KKRRKGPIDDALEDTASSPVNSPKVLGLQKTMDSYPGQEEDK 127

Query: 139 I---------------IEVGFVGRDNKNYCSTGLKNIGLCLVPVSMALNY 165
           +               I++ F GR   N+    LK  GLCLVP+SM + Y
Sbjct: 128 LSKDDATTSGQRDKISIDLDFAGRGGGNFSE--LKKRGLCLVPLSMMVKY 171

[Close]
BLAST of Cla005290 vs. TrEMBL
Match: B9IAE5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s15000g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 41/144 (28.47%), Postives = 73/144 (50.69%), Query Frame = 1 

Query: 25  EDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETR--ICCSSAVDGGAPP 84
           E+S W+S          +  S  + +   +++ S ++S+  +++   + CSS ++GG P 
Sbjct: 21  EESGWTSYFEDFSNHKEEDHSLCSITFDSSSMVSDAASFPPWKSSHAVACSS-INGGLPK 80

Query: 85  SASSFQRKRRKMAADDDLEDTATSPPHPSIVSKGKGSKDHYGEVEDRIIEVGFVGRDNKN 144
             +  + + ++++ DD LEDTA+SP +    +K     + Y E  +       +    KN
Sbjct: 81  ELTFKKTRAKEISLDDSLEDTASSPVNSPKGNKEGSGLEQYAEGLETSERCEIIFSSGKN 140

Query: 145 YCSTGLKNIGLCLVPVSMALNYFG 167
            C   LK  GLCLVP+SM +NY G
Sbjct: 141 DC-IDLKKRGLCLVPLSMLVNYLG 162

[Close]
BLAST of Cla005290 vs. TrEMBL
Match: K7M2W0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G308000 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 43/144 (29.86%), Postives = 69/144 (47.92%), Query Frame = 1 

Query: 25  EDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETRICCSSAVDGGAPPSA 84
           E  S+ S+     L+            HHN++ S  S+      ++              
Sbjct: 35  EQQSYCSNLGGSSLVSDAASCAAWKLSHHNHLVSHPSNNNVVSKKL-------------- 94

Query: 85  SSFQRKRRKMAADDD-LEDTATSPPHPSIVSKGKG-SKDHYGEVEDRIIEVGFVGRDNKN 144
             F++ R +  +DDD LEDTA+SP +     KGK  + +H+ +++    ++ F G  N  
Sbjct: 95  -RFKKTRTQQISDDDPLEDTASSPVNSP---KGKEFNSEHHPKLQADECDINFNG--NNI 154

Query: 145 YCSTGLKNIGLCLVPVSMALNYFG 167
            C+T LK  GLCLVP+SM +NY+G
Sbjct: 155 ECNTNLKKKGLCLVPLSMLVNYYG 158

[Close]
BLAST of Cla005290 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 5.7e-59
Identity = 131/188 (69.68%), Postives = 143/188 (76.06%), Query Frame = 1 

Query: 1   MENSATSRICTFNQEDQCQATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSS 60
           MENSA SRIC+  +ED+C+AT FHED SWS+SSSMDDLLMFDV+S T HS          
Sbjct: 1   MENSANSRICSHGEEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRS-TIHS---------- 60

Query: 61  SSYEYFETRICCSSAVDGGAPPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE+F+TR+CCSSAVDGGA  SASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYEFFQTRLCCSSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPS 120

Query: 121 ----------------KGKGSKDHYGEVEDRIIEVGFVGRD-NKNYCSTGLKNIGLCLVP 166
                           KGKGS+D YGEVEDRII+VG VGRD NKNYCSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRATINQTKHKGKGSED-YGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVP 175

[Close]
BLAST of Cla005290 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 129/188 (68.62%), Postives = 140/188 (74.47%), Query Frame = 1 

Query: 1   MENSATSRICTFNQEDQCQATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSS 60
           MENSATSRIC+  +ED C+   FHED SWS+SSSMDDLLMFDV++ TTHS          
Sbjct: 1   MENSATSRICSHREEDTCEPM-FHEDRSWSTSSSMDDLLMFDVRT-TTHS---------- 60

Query: 61  SSYEYFETRICCSSAVDGGAPPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE F+T +CCSSAVDGGA PSASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERS 120

Query: 121 ----------------KGKGSKDHYGEVEDRIIEVGFVGRD-NKNYCSTGLKNIGLCLVP 166
                           KG GS+D YGEVEDRI EVGFVGRD NKN+CSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRAMMNQTKHKGNGSED-YGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVP 175

[Close]
BLAST of Cla005290 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.7e-50
Identity = 116/166 (69.88%), Postives = 124/166 (74.70%), Query Frame = 1 

Query: 23  FHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETRICCSSAVDGGAPP 82
           FHED SWS+SSSMDDLLMFDV++ TTHS          SSYE F+T +CCSSAVDGGA P
Sbjct: 2   FHEDRSWSTSSSMDDLLMFDVRT-TTHS----------SSYESFQTSLCCSSAVDGGAQP 61

Query: 83  SASSFQRKRRKMAADDDLEDTATSPPHPSIVS----------------------KGKGSK 142
           SASSF+ KRRKMAADDDLEDTATSPPHPSIVS                      KG GS+
Sbjct: 62  SASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMNQTKHKGNGSE 121

Query: 143 DHYGEVEDRIIEVGFVGRD-NKNYCSTGLKNIGLCLVPVSMALNYF 166
           D YGEVEDRI EVGFVGRD NKN+CSTGLKNIGLCLVPVSMALNYF
Sbjct: 122 D-YGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 155

[Close]
BLAST of Cla005290 vs. NCBI nr
Match: gi|645278750|ref|XP_008244374.1| (PREDICTED: uncharacterized protein LOC103342517 isoform X2 [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 64/167 (38.32%), Postives = 84/167 (50.30%), Query Frame = 1 

Query: 16  DQCQATSFH--EDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFETRICCS 75
           D  +ATS    E+SSW+    ++D L       + +    +   SS SSY Y  + I   
Sbjct: 18  DNTRATSHESPEESSWTMY--LEDFLT------SNNDDGDDEERSSFSSYGYENSSIISD 77

Query: 76  ---------SAVDGGAP--PSASSFQRKRRKMAAD---DDLEDTATSPPHPSIVSKGKGS 135
                    SA++G      + SSF+  RRK   D   D LEDTA+SP +     K KGS
Sbjct: 78  AASAITRKLSAINGEVIGFDNRSSFEFDRRKTKEDLLDDALEDTASSPVNSP---KEKGS 137

Query: 136 KDHYGEVEDRIIEVGFVGRDNKNYCSTGLKNIGLCLVPVSMALNYFG 167
               G V++R  E+GF+GR+N    ST LK  GLCLVP SM  NYFG
Sbjct: 138 TS--GLVDERN-ELGFIGREND---STDLKKRGLCLVPFSMVANYFG 167

[Close]
BLAST of Cla005290 vs. NCBI nr
Match: gi|590607419|ref|XP_007020978.1| (CTD small phosphatase-like protein 2, putative [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 1 

Query: 19  QATSFHEDSSWSSSSSMDDLLMFDVQSRTTHSQHHNNIFSSSSSYEYFE--TRICCSSAV 78
           +A  + E+SSW+       +    + ++ +     N+ FSS  +Y+     +   CS+A 
Sbjct: 17  EADEYPEESSWT-------MYFESLSNKNSDMDVENSSFSSDINYQSSSLVSDAACSAAG 76

Query: 79  --DGGAPPSAS----SFQRKR--RKMAADDDLEDTATSPPHPSIV--------------- 138
             D GAP   S    SF++++  +    DDDLEDTA+SP +   V               
Sbjct: 77  RHDFGAPLGKSCNRLSFKKRKCNKGRLVDDDLEDTASSPANSPKVCNLINHFDKNLKQKD 136

Query: 139 ----SKGKGSKDHYGEVEDRIIEVGFVGRDNKNYCSTGLKNIGLCLVPVSMALNYFG 167
               S+ KGS    G++++R  E+G +GR++     T LK +GLCLVP+SM ++Y G
Sbjct: 137 VMDKSQEKGSAS--GQIDERNDELGLIGREDDG---TELKKMGLCLVPLSMVVHYLG 181

The following BLAST results are available for this feature:
BLAST of Cla005290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F7_CUCSA1.3e-5768.62Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1[more]
A0A061F6J6_THECC9.3e-0830.51CTD small phosphatase-like protein 2, putative OS=Theobroma cacao GN=TCM_030992 ... [more]
A0A059BM49_EUCGR6.7e-0631.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00971 PE=4 SV=1[more]
B9IAE5_POPTR6.7e-0628.47Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s15000g PE=4 SV=1[more]
K7M2W0_SOYBN6.7e-0629.86Uncharacterized protein OS=Glycine max GN=GLYMA_13G308000 PE=4 SV=1[more]
BLAST of Cla005290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126934|ref|XP_008463437.1|5.7e-5969.68PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo][more]
gi|700201012|gb|KGN56145.1|1.8e-5768.62hypothetical protein Csa_3G078270 [Cucumis sativus][more]
gi|778688383|ref|XP_011652737.1|1.7e-5069.88PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus][more]
gi|645278750|ref|XP_008244374.1|7.8e-0838.32PREDICTED: uncharacterized protein LOC103342517 isoform X2 [Prunus mume][more]
gi|590607419|ref|XP_007020978.1|1.3e-0730.51CTD small phosphatase-like protein 2, putative [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044699 single-organism process
biological_process GO:0008150 biological_process
biological_process GO:0010089 xylem development
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005290Cla005290.1mRNA