CSPI03G05290 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G05290
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 4299891 .. 4301038 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGGTACTTTCTTTTAGCAAATTAATATCACATTTGTGAATAATTTCAGAAGTAATTTAAATTTCTTTTTCACGAACATATTTTCTTTCGTTGTTATCACAAATAATTGAAAATTATTTAGGTAAAATTTGAAAATCAGTAGCATTTTTCAAAACTAATTATTTTTTGCTTTTAGCTTCGAGAGAATTCAAATGTTTTCTTCAAAAAAGATATGGAAACAACGGTATGAAAGGGTGAGATAACAAAAATAGTTTTTTTAATAACTATTTCATTTTTTTTTTAAAAAAAAACTAAATTTATTTTAAGTAAAAAAAAAGTTCACTTCTTACCCAAATTTCAAAACAAAGTAAGCTTTTTTAGTTTTCAAATTTGAAGTACTTTTTCAAGCTTGTCTGATCACATCAACCCCTGTAATGATTTCCTTTCCATTAGGAAAACAAGAAAGTAGTTTTTATATACATATATTAACTTGGTTAATTAATTTGGCCTTCTAATCAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGTTTCTAATTTTTACCTTAAAAAATATGTTGAGTTCGTTTTGATATTATAATAACATTATTATTTGAGATGCAATATATATAATCTAACTGTGATTTTTGGGGCTATGCTTTATTTTTGTAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

mRNA sequence

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Homology

[Close]

BLAST of CSPI03G05290 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-92
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRA MN
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. TrEMBL
Match: A0A061F6J6_THECC (CTD small phosphatase-like protein 2, putative OS=Theobroma cacao GN=TCM_030992 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 1


Query: 3   NSATSRICSHREEDTCEPMFHEDRSW-----STSSSMDDLLMFDVRTTTHSSSYESFQTS 62
           NS +    SH E D     + E+ SW     S S+   D+   DV  ++ SS      +S
Sbjct: 6   NSMSRSPVSHGEADE----YPEESSWTMYFESLSNKNSDM---DVENSSFSSDINYQSSS 65

Query: 63  L----CCSSAV--DGGAQPSASSFRL--KRRKM----AADDDLEDTATSPPHPSIVSKMD 122
           L     CS+A   D GA    S  RL  K+RK       DDDLEDTA+SP +   V  + 
Sbjct: 66  LVSDAACSAAGRHDFGAPLGKSCNRLSFKKRKCNKGRLVDDDLEDTASSPANSPKVCNLI 125

Query: 123 ERSSKQQKKQRATMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCL 175
               K  K Q+  M++++ KG+ S   G++++R  E+G +GR+++     T LK +GLCL
Sbjct: 126 NHFDKNLK-QKDVMDKSQEKGSAS---GQIDERNDELGLIGREDD----GTELKKMGLCL 179

[Close]

BLAST of CSPI03G05290 vs. TrEMBL
Match: B9SA47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.1e-06
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 64  VDGGAQPSASSFRLKRRKMA-ADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMNQT 123
           +D     S  SF+ ++ K A  DD LEDTA+SP +   V  +  + +K  K++   M+ +
Sbjct: 96  IDNNKSYSRLSFKKRKTKGALVDDSLEDTASSPVNSPKVYDIMNQFNKSIKQR--DMDVS 155

Query: 124 KHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 176
           + KGN      ++ D  + +GF+GR+++    +T LK  GLCLVPVSM +NYF
Sbjct: 156 QDKGNNITSSDQLLDDRSNLGFLGRESD----NTELKKRGLCLVPVSMVVNYF 202

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 1.4e-92
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRA MN
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.4e-81
Identity = 158/176 (89.77%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCC
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQ SASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDE SSKQQKKQRAT+N
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 3.7e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 21  MFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRR 80
           MFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRR
Sbjct: 1   MFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRR 60

Query: 81  KMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMNQTKHKGNGSEDYGEVEDRIT 140
           KMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRA MNQTKHKGNGSEDYGEVEDRIT
Sbjct: 61  KMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMNQTKHKGNGSEDYGEVEDRIT 120

Query: 141 EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 EVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 156

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: gi|590607419|ref|XP_007020978.1| (CTD small phosphatase-like protein 2, putative [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 1


Query: 3   NSATSRICSHREEDTCEPMFHEDRSW-----STSSSMDDLLMFDVRTTTHSSSYESFQTS 62
           NS +    SH E D     + E+ SW     S S+   D+   DV  ++ SS      +S
Sbjct: 6   NSMSRSPVSHGEADE----YPEESSWTMYFESLSNKNSDM---DVENSSFSSDINYQSSS 65

Query: 63  L----CCSSAV--DGGAQPSASSFRL--KRRKM----AADDDLEDTATSPPHPSIVSKMD 122
           L     CS+A   D GA    S  RL  K+RK       DDDLEDTA+SP +   V  + 
Sbjct: 66  LVSDAACSAAGRHDFGAPLGKSCNRLSFKKRKCNKGRLVDDDLEDTASSPANSPKVCNLI 125

Query: 123 ERSSKQQKKQRATMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCL 175
               K  K Q+  M++++ KG+ S   G++++R  E+G +GR+++     T LK +GLCL
Sbjct: 126 NHFDKNLK-QKDVMDKSQEKGSAS---GQIDERNDELGLIGREDD----GTELKKMGLCL 179

The following BLAST results are available for this feature:

BLAST of CSPI03G05290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G05290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F7_CUCSA	1.0e-92	99.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1	[more]
A0A061F6J6_THECC	1.3e-07	34.92	CTD small phosphatase-like protein 2, putative OS=Theobroma cacao GN=TCM_030992 ...	[more]
B9SA47_RICCO	7.1e-06	37.17	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1	[more]

BLAST of CSPI03G05290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G05290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201012\|gb\|KGN56145.1\|	1.4e-92	99.43	hypothetical protein Csa_3G078270 [Cucumis sativus]	[more]
gi\|659126934\|ref\|XP_008463437.1\|	7.4e-81	89.77	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo]	[more]
gi\|778688383\|ref\|XP_011652737.1\|	3.7e-80	99.36	PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus]	[more]
gi\|590607419\|ref\|XP_007020978.1\|	1.9e-07	34.92	CTD small phosphatase-like protein 2, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05290.1	CSPI03G05290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33974	FAMILY NOT NAMED	coord: 69..176 score: 1.5
None	No IPR available	PANTHER	PTHR33974:SF1	SUBFAMILY NOT NAMED	coord: 69..176 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G05290	Cla005290	Watermelon (97103) v1	cpiwmB193
CSPI03G05290	Csa3G078270	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G05290	MELO3C025402	Melon (DHL92) v3.5.1	cpimeB231
CSPI03G05290	ClCG10G005590	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G05290	Lsi05G006180	Bottle gourd (USVL1VR-Ls)	cpilsiB197
CSPI03G05290	MELO3C025402.2	Melon (DHL92) v3.6.1	cpimedB228
CSPI03G05290	CsaV3_3G005300	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G05290	Cla97C10G189830	Watermelon (97103) v2	cpiwmbB184
CSPI03G05290	Bhi11G000506	Wax gourd	cpiwgoB218
CSPI03G05290	Cp4.1LG01g08200	Cucurbita pepo (Zucchini)	cpecpiB392
CSPI03G05290	CsGy3G005370	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G05290	Watermelon (97103) v2	cpiwmbB217
CSPI03G05290	Wax gourd	cpiwgoB234
CSPI03G05290	Cucumber (Gy14) v1	cgycpiB044
CSPI03G05290	Cucurbita maxima (Rimu)	cmacpiB019
CSPI03G05290	Cucurbita maxima (Rimu)	cmacpiB334
CSPI03G05290	Cucurbita maxima (Rimu)	cmacpiB710
CSPI03G05290	Cucurbita moschata (Rifu)	cmocpiB010
CSPI03G05290	Cucurbita moschata (Rifu)	cmocpiB317
CSPI03G05290	Cucurbita moschata (Rifu)	cmocpiB703
CSPI03G05290	Cucurbita pepo (Zucchini)	cpecpiB007
CSPI03G05290	Cucurbita pepo (Zucchini)	cpecpiB783
CSPI03G05290	Silver-seed gourd	carcpiB0696
CSPI03G05290	Silver-seed gourd	carcpiB0828
CSPI03G05290	Silver-seed gourd	carcpiB0942