Cp4.1LG01g05900 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g05900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Two-component response regulator
Location	Cp4.1LG01 : 492527 .. 493596 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTCATCTCTCTCTTGTGACTTTCTGATTCTCTTACGTTTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTATTTCTAACCCTAAATTCAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCCTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGGTAAAAATACAAAAGTTTTCATTTTTTTCATTCAAAACAGGATTTCAGAATCTGGGCAAGAAAAAAAAAGCAATCTTTTTGTTTGTTTGGTTGTTTGTTTGTTTGTTTGTTTGTGCAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACATGAACATGAACACAACAACATAGAATGCGGTGATGTAAGTTAAAGATTGTGTTTGGTTGGTGAGAAAACGAAGGAAAATCCCCCAGAAAATTGGAGATGTTTTAATGGAATCTTTGTCGTTATTGCAGAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATATGAACTTCTCAAGAAAATCAAGGTTCCATTTTTATTTTTATTTTTATTCTTTCTTAAATTTATCGAAAAAAAAAAAAAAATTAATCTTGTTTGTGTTGCAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTTAGTTAATTTAGTTAATTTAGTTAATTTAAATCCATCCATCTTTATCCATACTATTATATTTTCAAAAAAAATTAATAAAAAAAAAATGAATTTGGTTAGGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGACGTGGTGAAGCTCAAGTGCCAGCTGATGATGAACTGAACCTTTTTTTTTTTTTTTTTTTTAATTTTAATTTTTATTTGAAACATTTGAAATGGCTTAGGATATTAGTTCCATCCAGTTCTTGTGTTTTTTTTTTCTTTCT

mRNA sequence

CAATTCATCTCTCTCTTGTGACTTTCTGATTCTCTTACGTTTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTATTTCTAACCCTAAATTCAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCCTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACATGAACATGAACACAACAACATAGAATGCGGTGATAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGACGTGGTGAAGCTCAAGTGCCAGCTGATGATGAACTGAACCTTTTTTTTTTTTTTTTTTTTAATTTTAATTTTTATTTGAAACATTTGAAATGGCTTAGGATATTAGTTCCATCCAGTTCTTGTGTTTTTTTTTTCTTTCT

Coding sequence (CDS)

ATGGAGGCTGCCGGTTCCTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACATGAACATGAACACAACAACATAGAATGCGGTGATAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGACGTGGTGAAGCTCAAGTGCCAGCTGATGATGAACTGA

Protein sequence

MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECGDRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLMMN

Homology

[Close]

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot
Match: ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-25
Identity = 65/137 (47.45%), Postives = 85/137 (62.04%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE--------------HE 75
           HVLAVDD+L+DRKL+E LLKNSS++VTT ++G  ALE LGL DE              H+
Sbjct: 11  HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSSPDHQ 70

Query: 76  HEHNNIECGDRC----------------SRMKEVPVVVVSSENVPTRINKCLEEGAEMFM 123
               N+   D C                S +K++PVV++SSENVP RIN+CLE+GAE F 
Sbjct: 71  EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130

[Close]

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot
Match: ORR4_ORYSJ (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-25
Identity = 65/137 (47.45%), Postives = 85/137 (62.04%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE--------------HE 75
           HVLAVDD+L+DRKL+E LLKNSS++VTT ++G  ALE LGL DE              H+
Sbjct: 11  HVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSSSSPDHQ 70

Query: 76  HEHNNIECGDRC----------------SRMKEVPVVVVSSENVPTRINKCLEEGAEMFM 123
               N+   D C                S +K++PVV++SSENVP RIN+CLE+GAE F 
Sbjct: 71  EIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFF 130

[Close]

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot
Match: ORR5_ORYSJ (Two-component response regulator ORR5 OS=Oryza sativa subsp. japonica GN=RR5 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-22
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 1   MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLG----- 60
           M    S   + G  PHVLAVDD+ VDR ++  +L++S F+VT  ++G+ ALE LG     
Sbjct: 1   MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV 60

Query: 61  ---LLDEHEHEHNNIECGDRC---SRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 118
              + D    E    E   +    SR+KE+PVV++SSENV TRIN+CLEEGAE F+LKP+
Sbjct: 61  SMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPV 120

[Close]

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot
Match: ORR5_ORYSI (Two-component response regulator ORR5 OS=Oryza sativa subsp. indica GN=RR5 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.3e-22
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 1   MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLG----- 60
           M    S   + G  PHVLAVDD+ VDR ++  +L++S F+VT  ++G+ ALE LG     
Sbjct: 1   MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAVDSGKRALELLGSEPNV 60

Query: 61  ---LLDEHEHEHNNIECGDRC---SRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 118
              + D    E    E   +    SR+KE+PVV++SSENV TRIN+CLEEGAE F+LKP+
Sbjct: 61  SMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVSTRINRCLEEGAEDFLLKPV 120

[Close]

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot
Match: ARR8_ARATH (Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL-LDE------------HEH 75
           HVLAVDD+L DRK++E+LL+ SS +VTT ++G  ALEFLGL +D+            H+ 
Sbjct: 10  HVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQE 69

Query: 76  EHNNIECGDRC----------SRMKE------VPVVVVSSENVPTRINKCLEEGAEMFML 123
              N+   D C           ++KE      +PVV++SSENVP RI++CLEEGAE F L
Sbjct: 70  VEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFL 129

[Close]

BLAST of Cp4.1LG01g05900 vs. TrEMBL
Match: F6HC71_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03070 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.2e-33
Identity = 85/149 (57.05%), Postives = 101/149 (67.79%), Query Frame = 1


Query: 1   MEAAGSSSSQN------GYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFL 60
           M+AA SSS+ +      G +PHVLAVDDNL+DRKL+EKLLKN S +VTTAENG  ALE+L
Sbjct: 1   MDAASSSSANDMMVMDYGDEPHVLAVDDNLIDRKLIEKLLKNFSCRVTTAENGLRALEYL 60

Query: 61  GLLDEHEHEHN------NIECGDRC----------------SRMKEVPVVVVSSENVPTR 120
           GL D  +  H       N+   D C                S +KEVPVV++SSEN+PTR
Sbjct: 61  GLGDNQQTSHKASVSKVNLIITDYCMPGMTGYELLKRVKQSSILKEVPVVIMSSENIPTR 120

Query: 121 INKCLEEGAEMFMLKPLKQSDVVKLKCQL 122
           INKCLEEGA+MFMLKPLKQSDV KL+C L
Sbjct: 121 INKCLEEGAQMFMLKPLKQSDVKKLRCYL 149

[Close]

BLAST of Cp4.1LG01g05900 vs. TrEMBL
Match: A0A067FMZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 85/144 (59.03%), Postives = 99/144 (68.75%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 9   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 68

Query: 63  EHN--------NIECGDRC----------------SRMKEVPVVVVSSENVPTRINKCLE 122
           ++N        N+   D C                S MKEVPVVVVSSEN+PTRIN+CLE
Sbjct: 69  QNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE 128

[Close]

BLAST of Cp4.1LG01g05900 vs. TrEMBL
Match: W9SAW3_9ROSA (Two-component response regulator OS=Morus notabilis GN=L484_011250 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 88/153 (57.52%), Postives = 101/153 (66.01%), Query Frame = 1


Query: 1   MEAAGSSSSQNGY------QPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFL 60
           ME+  SSSS          QPHVLAVDDN++DRKLVEKLL+NSS +VTTAENG  ALEFL
Sbjct: 1   MESGSSSSSSKVLMENIVDQPHVLAVDDNVIDRKLVEKLLQNSSCRVTTAENGPRALEFL 60

Query: 61  GLLDEHEHEHNNIECG---------DRC----------------SRMKEVPVVVVSSENV 120
           GL D   H HN +E           D C                S MKEVPVV++SSENV
Sbjct: 61  GLGD---HRHNALEGNVSKVNLIITDYCMPGMTGYDLLKKIKESSVMKEVPVVIMSSENV 120

Query: 121 PTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLM 123
           PTRINKCLEEGA+MFM+KPLKQSD+ +L+C LM
Sbjct: 121 PTRINKCLEEGAQMFMIKPLKQSDIKRLRCHLM 150

[Close]

BLAST of Cp4.1LG01g05900 vs. TrEMBL
Match: V4T7K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 85/144 (59.03%), Postives = 99/144 (68.75%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 8   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 67

Query: 63  EHN--------NIECGDRC----------------SRMKEVPVVVVSSENVPTRINKCLE 122
           ++N        N+   D C                S MKEVPVVVVSSEN+PTRIN+CLE
Sbjct: 68  QNNLNSNGTKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINECLE 127

[Close]

BLAST of Cp4.1LG01g05900 vs. TrEMBL
Match: C6TAY9_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 87/144 (60.42%), Postives = 100/144 (69.44%), Query Frame = 1


Query: 3   AAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE 62
           AAGSSS+   ++G  PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  ALE LGL   
Sbjct: 2   AAGSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSG 61

Query: 63  HEHEHN-----NIECGDRC----------------SRMKEVPVVVVSSENVPTRINKCLE 122
            ++  N     N+   D C                S  KEVPVV++SSEN+PTRINKCLE
Sbjct: 62  GQNTMNGRSKVNMVITDYCMPGMTGYELLKKIKESSVTKEVPVVIMSSENIPTRINKCLE 121

[Close]

BLAST of Cp4.1LG01g05900 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-23
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL-LDE------------HEH 75
           HVLAVDD+L DRK++E+LL+ SS +VTT ++G  ALEFLGL +D+            H+ 
Sbjct: 10  HVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQE 69

Query: 76  EHNNIECGDRC----------SRMKE------VPVVVVSSENVPTRINKCLEEGAEMFML 123
              N+   D C           ++KE      +PVV++SSENVP RI++CLEEGAE F L
Sbjct: 70  VEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFL 129

[Close]

BLAST of Cp4.1LG01g05900 vs. TAIR10
Match: AT1G74890.1 (AT1G74890.1 response regulator 15)

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-20
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 1


Query: 2   EAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEH- 61
           + + S SS +  + HVLAVDD+ VDRK++E+LLK S+ KVTT E+G  AL++LGL  ++ 
Sbjct: 5   DLSSSLSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNG 64

Query: 62  ----EHEHNNIECGD----------------RCSRMKEVPVVVVSSENVPTRINKCLEEG 121
               +    N+   D                  S ++E+PVV++SSEN+  RI +C+ EG
Sbjct: 65  SSGLKDLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEG 124

Query: 122 AEMFMLKPLKQSDVVKLKCQLM 123
           AE F+LKP+K +DV +LK  +M
Sbjct: 125 AEEFLLKPVKLADVKRLKELIM 146

[Close]

BLAST of Cp4.1LG01g05900 vs. TAIR10
Match: AT2G40670.2 (AT2G40670.2 response regulator 16)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-20
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECG----- 75
           HVLAVDDNL+DRKLVE+LLK S  KVTTAEN   ALE+LGL D+++H  + + C      
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQH-IDALTCNVMKVS 89

Query: 76  ----DRC-------SRMKEVPVVVVSSENVPTRI----------NKCLEEGAEMFMLKPL 123
               D C         +K+V     +   VP  I          NKCL  GA+MFM KPL
Sbjct: 90  LIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPL 149

[Close]

BLAST of Cp4.1LG01g05900 vs. TAIR10
Match: AT3G56380.1 (AT3G56380.1 response regulator 17)

HSP 1 Score: 93.6 bits (231), Expect = 9.2e-20
Identity = 64/129 (49.61%), Postives = 77/129 (59.69%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHE------HNNIEC 75
           HVLAVDDNL+DRKLVE++LK SS KVTTAENG  ALE+LGL D  + +        N+  
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLII 80

Query: 76  GDRC----SRMKEVPVVVVSS--ENVPTRI----------NKCLEEGAEMFMLKPLKQSD 123
            D C    +  + +  V  SS  + VP  I          NKCL  GA+MFM KPLK SD
Sbjct: 81  TDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLSD 140

[Close]

BLAST of Cp4.1LG01g05900 vs. TAIR10
Match: AT1G19050.1 (AT1G19050.1 response regulator 7)

HSP 1 Score: 74.3 bits (181), Expect = 5.8e-14
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1


Query: 4   AGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSS------------FKVTTAENGRSAL 63
           AG   +    + HVLAVDD++VDRK++E+LL+ SS             +    + G+ A 
Sbjct: 13  AGGDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGAS 72

Query: 64  EFLGL---LDEHEHEHNNIECGDRCSRMKE------VPVVVVSSENVPTRINKCLEEGAE 123
               L   L   ++    +   D   ++KE      VPVV++SSEN+  RI +CL+EGAE
Sbjct: 73  NLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAE 132

Query: 124 MFMLKPLKQSDVVKLKCQLMMN 125
            F+LKP+K +DV ++K  +M N
Sbjct: 133 EFLLKPVKLADVKRIKQLIMRN 154

[Close]

BLAST of Cp4.1LG01g05900 vs. NCBI nr
Match: gi|657955804|ref|XP_008369376.1| (PREDICTED: two-component response regulator ARR17 isoform X2 [Malus domestica])

HSP 1 Score: 158.7 bits (400), Expect = 6.6e-36
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 1   MEAAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLL 60
           ME++ SSS     N  QPHVLAVDD+LVDRKL+EKLL N S KVTTAENG SALEFLGL 
Sbjct: 1   MESSSSSSKGFMANVEQPHVLAVDDSLVDRKLIEKLLTNLSCKVTTAENGASALEFLGLG 60

Query: 61  DEHEHEHNNIECGDRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKL 120
           D+H    +N+      S MKEVPVV++SSENVPTRINKCLEEGA+MFMLKPLKQSD+ KL
Sbjct: 61  DQHNSLESNVSNSKESSIMKEVPVVIMSSENVPTRINKCLEEGAQMFMLKPLKQSDMKKL 120

Query: 121 KCQLM 123
           +  LM
Sbjct: 121 RYHLM 125

[Close]

BLAST of Cp4.1LG01g05900 vs. NCBI nr
Match: gi|1021576127|ref|XP_016179276.1| (PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 90/152 (59.21%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAAAPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHN-----NIECGDRC----------------SRMKEVPVVVVSSENVP 120
           EFLGL D  ++  N     N+   D C                S MKEVPVV++SSEN+P
Sbjct: 61  EFLGLTDSEQNAMNGRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMSSENIP 120

Query: 121 TRINKCLEEGAEMFMLKPLKQSDVVKLKCQLM 123
           TRIN+CLEEGA+MFMLKPLKQSDV KL CQLM
Sbjct: 121 TRINQCLEEGAQMFMLKPLKQSDVKKLTCQLM 152

[Close]

BLAST of Cp4.1LG01g05900 vs. NCBI nr
Match: gi|1012256750|ref|XP_015945037.1| (PREDICTED: two-component response regulator ARR17-like [Arachis duranensis])

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-34
Identity = 90/152 (59.21%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAATPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHN-----NIECGDRC----------------SRMKEVPVVVVSSENVP 120
           EFLGL D  ++  N     N+   D C                S MKEVPVV++SSEN+P
Sbjct: 61  EFLGLTDSEQNAMNGRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMSSENIP 120

Query: 121 TRINKCLEEGAEMFMLKPLKQSDVVKLKCQLM 123
           TRIN+CLEEGA+MFMLKPLKQSDV KL CQLM
Sbjct: 121 TRINQCLEEGAQMFMLKPLKQSDVKKLTCQLM 152

[Close]

BLAST of Cp4.1LG01g05900 vs. NCBI nr
Match: gi|731411895|ref|XP_010658172.1| (PREDICTED: two-component response regulator ARR17 isoform X2 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-33
Identity = 85/148 (57.43%), Postives = 101/148 (68.24%), Query Frame = 1


Query: 1   MEAAGSSSSQN------GYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFL 60
           M+AA SSS+ +      G +PHVLAVDDNL+DRKL+EKLLKN S +VTTAENG  ALE+L
Sbjct: 1   MDAASSSSANDMMVMDYGDEPHVLAVDDNLIDRKLIEKLLKNFSCRVTTAENGLRALEYL 60

Query: 61  GLLDEHEHEHN------NIECGDRC---------------SRMKEVPVVVVSSENVPTRI 120
           GL D  +  H       N+   D C               S +KEVPVV++SSEN+PTRI
Sbjct: 61  GLGDNQQTSHKASVSKVNLIITDYCMPGMTGYELLKRVKSSILKEVPVVIMSSENIPTRI 120

Query: 121 NKCLEEGAEMFMLKPLKQSDVVKLKCQL 122
           NKCLEEGA+MFMLKPLKQSDV KL+C L
Sbjct: 121 NKCLEEGAQMFMLKPLKQSDVKKLRCYL 148

[Close]

BLAST of Cp4.1LG01g05900 vs. NCBI nr
Match: gi|225448707|ref|XP_002280746.1| (PREDICTED: two-component response regulator ARR17 isoform X1 [Vitis vinifera])

HSP 1 Score: 148.3 bits (373), Expect = 9.0e-33
Identity = 85/149 (57.05%), Postives = 101/149 (67.79%), Query Frame = 1


Query: 1   MEAAGSSSSQN------GYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFL 60
           M+AA SSS+ +      G +PHVLAVDDNL+DRKL+EKLLKN S +VTTAENG  ALE+L
Sbjct: 1   MDAASSSSANDMMVMDYGDEPHVLAVDDNLIDRKLIEKLLKNFSCRVTTAENGLRALEYL 60

Query: 61  GLLDEHEHEHN------NIECGDRC----------------SRMKEVPVVVVSSENVPTR 120
           GL D  +  H       N+   D C                S +KEVPVV++SSEN+PTR
Sbjct: 61  GLGDNQQTSHKASVSKVNLIITDYCMPGMTGYELLKRVKQSSILKEVPVVIMSSENIPTR 120

Query: 121 INKCLEEGAEMFMLKPLKQSDVVKLKCQL 122
           INKCLEEGA+MFMLKPLKQSDV KL+C L
Sbjct: 121 INKCLEEGAQMFMLKPLKQSDVKKLRCYL 149

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ORR4_ORYSI	4.0e-25	47.45	Two-component response regulator ORR4 OS=Oryza sativa subsp. indica GN=RR4 PE=2 ...	[more]
ORR4_ORYSJ	4.0e-25	47.45	Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica GN=RR4 PE=...	[more]
ORR5_ORYSJ	9.3e-22	46.09	Two-component response regulator ORR5 OS=Oryza sativa subsp. japonica GN=RR5 PE=...	[more]
ORR5_ORYSI	9.3e-22	46.09	Two-component response regulator ORR5 OS=Oryza sativa subsp. indica GN=RR5 PE=2 ...	[more]
ARR8_ARATH	1.6e-21	45.59	Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g05900 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HC71_VITVI	6.2e-33	57.05	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03070 PE=4 SV=...	[more]
A0A067FMZ9_CITSI	1.1e-32	59.03	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1	[more]
W9SAW3_9ROSA	1.1e-32	57.52	Two-component response regulator OS=Morus notabilis GN=L484_011250 PE=4 SV=1	[more]
V4T7K2_9ROSI	1.1e-32	59.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1	[more]
C6TAY9_SOYBN	1.8e-32	60.42	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Cp4.1LG01g05900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41310.1	8.9e-23	45.59	response regulator 3	[more]
AT1G74890.1	2.4e-20	40.85	response regulator 15	[more]
AT2G40670.2	4.1e-20	47.37	response regulator 16	[more]
AT3G56380.1	9.2e-20	49.61	response regulator 17	[more]
AT1G19050.1	5.8e-14	35.92	response regulator 7	[more]

BLAST of Cp4.1LG01g05900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|657955804\|ref\|XP_008369376.1\|	6.6e-36	68.80	PREDICTED: two-component response regulator ARR17 isoform X2 [Malus domestica]	[more]
gi\|1021576127\|ref\|XP_016179276.1\|	1.3e-34	59.21	PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis]	[more]
gi\|1012256750\|ref\|XP_015945037.1\|	1.3e-34	59.21	PREDICTED: two-component response regulator ARR17-like [Arachis duranensis]	[more]
gi\|731411895\|ref\|XP_010658172.1\|	6.9e-33	57.43	PREDICTED: two-component response regulator ARR17 isoform X2 [Vitis vinifera]	[more]
gi\|225448707\|ref\|XP_002280746.1\|	9.0e-33	57.05	PREDICTED: two-component response regulator ARR17 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR011006	CheY-like_superfamily
IPR001789	Sig_transdc_resp-reg_receiver

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g05900.1	Cp4.1LG01g05900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 17..116 score: 4.
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 16..122 score: 17
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 15..116 score: 2.7
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 14..116 score: 1.8
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 15..124 score: 4.8
None	No IPR available	PANTHER	PTHR26402:SF521	TWO-COMPONENT RESPONSE REGULATOR ARR16-RELATED	coord: 15..124 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g05900	Cucsa.143870	Cucumber (Gy14) v1	cgycpeB0388
Cp4.1LG01g05900	CmaCh04G001000	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g05900	CmoCh04G000990	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g05900	Cla007300	Watermelon (97103) v1	cpewmB418
Cp4.1LG01g05900	Csa5G223020	Cucumber (Chinese Long) v2	cpecuB438
Cp4.1LG01g05900	ClCG07G005170	Watermelon (Charleston Gray)	cpewcgB410
Cp4.1LG01g05900	CSPI05G11620	Wild cucumber (PI 183967)	cpecpiB438
Cp4.1LG01g05900	Lsi04G010150	Bottle gourd (USVL1VR-Ls)	cpelsiB355
Cp4.1LG01g05900	CsaV3_5G036740	Cucumber (Chinese Long) v3	cpecucB0552
Cp4.1LG01g05900	CsaV3_5G011030	Cucumber (Chinese Long) v3	cpecucB0542
Cp4.1LG01g05900	Bhi07G000410	Wax gourd	cpewgoB0554
Cp4.1LG01g05900	CsGy5G008880	Cucumber (Gy14) v2	cgybcpeB647
Cp4.1LG01g05900	Carg24469	Silver-seed gourd	carcpeB1258

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g05900	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g05900	Cucumber (Gy14) v1	cgycpeB0478
Cp4.1LG01g05900	Cucurbita maxima (Rimu)	cmacpeB723
Cp4.1LG01g05900	Cucurbita moschata (Rifu)	cmocpeB675
Cp4.1LG01g05900	Wild cucumber (PI 183967)	cpecpiB423
Cp4.1LG01g05900	Melon (DHL92) v3.5.1	cpemeB366
Cp4.1LG01g05900	Cucumber (Gy14) v2	cgybcpeB636
Cp4.1LG01g05900	Melon (DHL92) v3.6.1	cpemedB442
Cp4.1LG01g05900	Silver-seed gourd	carcpeB0939