CmaCh04G001000 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G001000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Two-component response regulator
Location	Cma_Chr04 : 495945 .. 496885 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTCTAACCCTAAATTTAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGGTAAAAATACAAAAGTTTTCATTTTTTTTCATTGAAAACAGAATTTGAGAATCTGGGCAAGAAAAAAAAAGCAATCTTTTTGTTTGTTTGGTTGTTTGTTTGTTTGTTTGTGCAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTGTAAGTTAAAGATTGTGTTTGGTTGGTGAGAAAACGAAGGAAAATCCCCCAGAAAATTGGAGATGTTTTAATGGAATCTTTGTCGTGTTATTGCAGAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGGTTCCATTTTTTTTTTTTAATTCTTTCTTAAATTTATAGAAAAAAAAAAAAAAAAAAAAAACTTGTTTGTGTTGCAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTTAGTTAATTTAGTTAATTTAGTTAATTTAGTTAATTTAAATCCATCCATCTTTATCCATACTATTATACTTTTTAAAAAATTAATAAAAATAATTAATTGGTTAGGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

mRNA sequence

TTCTTTCTTGCTCTGACAACCTCGTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTCTAACCCTAAATTTAATTTCCTCTCTATTGCAACCCTTCCATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

Coding sequence (CDS)

ATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA

Protein sequence

MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCX

Homology

[Close]

BLAST of CmaCh04G001000 vs. Swiss-Prot
Match: ARR17_ARATH (Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-43
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE++LK SS KVTTAENG  ALE+LGL D  + +          KV
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTD----SLTNVMKV 80

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           N+IITDYCMPGM+G+ELLKK+K  S +KEVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 81  NLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPL 140

Query: 136 KQSDVVKLKC 146
           K SDV KLKC
Sbjct: 141 KLSDVEKLKC 146

[Close]

BLAST of CmaCh04G001000 vs. Swiss-Prot
Match: ARR16_ARATH (Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 87/130 (66.92%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE+LLK S  KVTTAEN   ALE+LGL D+++H  + + C    KV
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHI-DALTC-NVMKV 89

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           ++IITDYCMPGM+G+ELLKK+K  S ++EVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 90  SLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPL 149

Query: 136 KQSDVVKLKC 146
           K +DV KLKC
Sbjct: 150 KLADVEKLKC 157

[Close]

BLAST of CmaCh04G001000 vs. Swiss-Prot
Match: ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000 vs. Swiss-Prot
Match: ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000 vs. Swiss-Prot
Match: ORR10_ORYSJ (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 80/132 (60.61%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSK- 75
           HVLAVDD+L DRKL+E+LLK SSF+VTT ++G  ALEFLGL   H+HE + I      + 
Sbjct: 10  HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL---HDHEDSPISTQSDQQE 69

Query: 76  --VNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFML 135
             VN+IITDYCMPGM+GY+LLKKIK  S ++++PVV++SS+N+P+RIN+CLEEGA+ F L
Sbjct: 70  VGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFL 129

Query: 136 KPLKQSDVVKLK 145
           KP++ SD+ KLK
Sbjct: 130 KPVRLSDMSKLK 138

[Close]

BLAST of CmaCh04G001000 vs. TrEMBL
Match: A0A0A0KMB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223020 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-59
Identity = 129/159 (81.13%), Postives = 134/159 (84.28%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVG----RSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVP 120
           LEFLGLLDEH ++H N E       RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVP
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNEWQQRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVP 120

Query: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 158

[Close]

BLAST of CmaCh04G001000 vs. TrEMBL
Match: C6SX49_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G223000 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 3   AAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE 62
           AA SSS+   ++G  PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  ALE LGL   
Sbjct: 2   AASSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSG 61

Query: 63  HEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRI 122
            ++  N     GRSKVNMIITDYCMPGM+GYELLKKIK  S MKEVPVV++SSEN+PTRI
Sbjct: 62  GQNNMN-----GRSKVNMIITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRI 121

Query: 123 NKCLEEGAEMFMLKPLKQSDVVKLKC 146
           NKCLEEGA+MF+LKPLKQSDV KL C
Sbjct: 122 NKCLEEGAQMFILKPLKQSDVRKLTC 142

[Close]

BLAST of CmaCh04G001000 vs. TrEMBL
Match: V4T7K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 8   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 67

Query: 63  EHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKC 122
           + NN+   G +KVN++ITDYCMPGM+GYELLKKIK  S MKEVPVVVVSSEN+PTRIN+C
Sbjct: 68  Q-NNLNSNG-TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 127

Query: 123 LEEGAEMFMLKPLKQSDVVKL 144
           LEEGA+MFMLKPLK SDV KL
Sbjct: 128 LEEGAQMFMLKPLKPSDVKKL 146

[Close]

BLAST of CmaCh04G001000 vs. TrEMBL
Match: A0A067FMZ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.6e-49
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 3   AAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEH 62
           ++ SSSS N   PHVLAVDD++VDRK+VE LLKNS+ KVTTAENG  ALEFLGL+DE E 
Sbjct: 9   SSSSSSSSNPKPPHVLAVDDSIVDRKIVENLLKNSACKVTTAENGMRALEFLGLVDEQEQ 68

Query: 63  EHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKC 122
           + NN+   G +KVN++ITDYCMPGM+GYELLKKIK  S MKEVPVVVVSSEN+PTRIN+C
Sbjct: 69  Q-NNLNSNG-TKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVVVSSENIPTRINEC 128

Query: 123 LEEGAEMFMLKPLKQSDVVKL 144
           LEEGA+MFMLKPLK SDV KL
Sbjct: 129 LEEGAQMFMLKPLKPSDVKKL 147

[Close]

BLAST of CmaCh04G001000 vs. TrEMBL
Match: A0A0B2QW54_GLYSO (Two-component response regulator ARR17 OS=Glycine soja GN=glysoja_038301 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 106/146 (72.60%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 3   AAGSSSS---QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDE 62
           AAGSSS+   ++G  PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  ALE LGL   
Sbjct: 2   AAGSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSG 61

Query: 63  HEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRI 122
            ++  N     GRSKVNM+ITDYCMPGM+GYELLKKIK  S  KEVPVV++SSEN+PTRI
Sbjct: 62  GQNTMN-----GRSKVNMVITDYCMPGMTGYELLKKIKESSVTKEVPVVIMSSENIPTRI 121

Query: 123 NKCLEEGAEMFMLKPLKQSDVVKLKC 146
           NKCLEEGA+MF+LKPLKQSDV KL C
Sbjct: 122 NKCLEEGAQMFILKPLKQSDVKKLTC 142

[Close]

BLAST of CmaCh04G001000 vs. TAIR10
Match: AT3G56380.1 (AT3G56380.1 response regulator 17)

HSP 1 Score: 176.8 bits (447), Expect = 9.8e-45
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE++LK SS KVTTAENG  ALE+LGL D  + +          KV
Sbjct: 21  HVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTD----SLTNVMKV 80

Query: 76  NMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPL 135
           N+IITDYCMPGM+G+ELLKK+K  S +KEVPVV++SSEN+PTRINKCL  GA+MFM KPL
Sbjct: 81  NLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPL 140

Query: 136 KQSDVVKLKC 146
           K SDV KLKC
Sbjct: 141 KLSDVEKLKC 146

[Close]

BLAST of CmaCh04G001000 vs. TAIR10
Match: AT2G40670.2 (AT2G40670.2 response regulator 16)

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42
Identity = 87/131 (66.41%), Postives = 108/131 (82.44%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKV 75
           HVLAVDDNL+DRKLVE+LLK S  KVTTAEN   ALE+LGL D+++H  + + C    KV
Sbjct: 30  HVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHI-DALTC-NVMKV 89

Query: 76  NMIITDYCMPGMSGYELLKKIKR-CSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKP 135
           ++IITDYCMPGM+G+ELLKK+K+  S ++EVPVV++SSEN+PTRINKCL  GA+MFM KP
Sbjct: 90  SLIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKP 149

Query: 136 LKQSDVVKLKC 146
           LK +DV KLKC
Sbjct: 150 LKLADVEKLKC 158

[Close]

BLAST of CmaCh04G001000 vs. TAIR10
Match: AT1G59940.1 (AT1G59940.1 response regulator 3)

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-37
Identity = 79/131 (60.31%), Postives = 102/131 (77.86%), Query Frame = 1


Query: 14  QPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRS 73
           Q HVLAVDD+LVDR ++E+LL+ +S KVT  ++G  ALEFLGL D+      +     R 
Sbjct: 32  QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFD-----RL 91

Query: 74  KVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLK 133
           KV++IITDYCMPGM+GYELLKKIK  +  KEVPVV++SSENV TRI++CLEEGAE F+LK
Sbjct: 92  KVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLK 151

Query: 134 PLKQSDVVKLK 145
           P+K +DV +L+
Sbjct: 152 PVKLADVKRLR 157

[Close]

BLAST of CmaCh04G001000 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-37
Identity = 76/138 (55.07%), Postives = 103/138 (74.64%), Query Frame = 1


Query: 14  QPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRS 73
           Q HVLAVDD+L DRKL+E+LL+ SS +VTT ++G  ALEFLGL      + N+     ++
Sbjct: 8   QFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGL--RQSTDSNDPNAFSKA 67

Query: 74  -------KVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEG 133
                  +VN+IITDYCMPGM+GY+LLKK+K  S  +++PVV++SSENVP RI++CLEEG
Sbjct: 68  PVNHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEG 127

Query: 134 AEMFMLKPLKQSDVVKLK 145
           AE F LKP++ +D+ KLK
Sbjct: 128 AEEFFLKPVRLADLNKLK 143

[Close]

BLAST of CmaCh04G001000 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-37
Identity = 75/138 (54.35%), Postives = 103/138 (74.64%), Query Frame = 1


Query: 16  HVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL-LDEHEHE--------HNN 75
           HVLAVDD+L DRK++E+LL+ SS +VTT ++G  ALEFLGL +D+++          H  
Sbjct: 10  HVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQE 69

Query: 76  IECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEG 135
           +E      +N+IITDYCMPGM+GY+LLKK+K  +  + +PVV++SSENVP RI++CLEEG
Sbjct: 70  VE------INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEG 129

Query: 136 AEMFMLKPLKQSDVVKLK 145
           AE F LKP+K +D+ KLK
Sbjct: 130 AEEFFLKPVKLADLTKLK 141

[Close]

BLAST of CmaCh04G001000 vs. NCBI nr
Match: gi|778701578|ref|XP_011655050.1| (PREDICTED: two-component response regulator ARR17 isoform X2 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.1e-61
Identity = 129/155 (83.23%), Postives = 134/155 (86.45%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVV 120
           LEFLGLLDEH ++H N E   RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVPVVVV
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVPVVVV 120

Query: 121 SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 SSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 154

[Close]

BLAST of CmaCh04G001000 vs. NCBI nr
Match: gi|449457395|ref|XP_004146434.1| (PREDICTED: two-component response regulator ARR17 isoform X1 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 129/159 (81.13%), Postives = 134/159 (84.28%), Query Frame = 1


Query: 1   MEAAGSSSS----------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSA 60
           ME + SSSS          +NGYQPHVLAVDDNLVDRKLVEKLLKNSS KVTTAENG SA
Sbjct: 1   METSSSSSSSSSSCMKWSCENGYQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSA 60

Query: 61  LEFLGLLDEHEHEHNNIECVG----RSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVP 120
           LEFLGLLDEH ++H N E       RSKVNMIITDYCMPGMSGYELLKKIKR S+MKEVP
Sbjct: 61  LEFLGLLDEH-NQHTNFERSNEWQQRSKVNMIITDYCMPGMSGYELLKKIKRSSKMKEVP 120

Query: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC
Sbjct: 121 VVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 158

[Close]

BLAST of CmaCh04G001000 vs. NCBI nr
Match: gi|1012256750|ref|XP_015945037.1| (PREDICTED: two-component response regulator ARR17-like [Arachis duranensis])

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-50
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAATPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVS 120
           EFLGL D  ++  N     GRSKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++S
Sbjct: 61  EFLGLTDSEQNAMN-----GRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMS 120

Query: 121 SENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SEN+PTRIN+CLEEGA+MFMLKPLKQSDV KL C
Sbjct: 121 SENIPTRINQCLEEGAQMFMLKPLKQSDVKKLTC 149

[Close]

BLAST of CmaCh04G001000 vs. NCBI nr
Match: gi|1021576127|ref|XP_016179276.1| (PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis])

HSP 1 Score: 206.8 bits (525), Expect = 2.5e-50
Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MEAAGSSSS---------QNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSAL 60
           M + GSSSS         +N   PHVLAVDDNL+DRKLVEKLL+NSS KVTTAENG  AL
Sbjct: 1   MASTGSSSSSWSSSNWVMENAAAPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRAL 60

Query: 61  EFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVS 120
           EFLGL D  ++  N     GRSKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++S
Sbjct: 61  EFLGLTDSEQNAMN-----GRSKVNLVITDYCMPGMTGYELLKKIKESSSMKEVPVVIMS 120

Query: 121 SENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKC 146
           SEN+PTRIN+CLEEGA+MFMLKPLKQSDV KL C
Sbjct: 121 SENIPTRINQCLEEGAQMFMLKPLKQSDVKKLTC 149

[Close]

BLAST of CmaCh04G001000 vs. NCBI nr
Match: gi|694373205|ref|XP_009363791.1| (PREDICTED: two-component response regulator ARR17 [Pyrus x bretschneideri])

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 108/148 (72.97%), Postives = 122/148 (82.43%), Query Frame = 1


Query: 1   MEAAGSSSSQ----NGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGL 60
           MEAA SSSS+    N  QPHVLAVDD+LVDRKL+EKLL N S KVTTAENG SALEFLGL
Sbjct: 1   MEAASSSSSKGFMANVEQPHVLAVDDSLVDRKLIEKLLTNLSCKVTTAENGASALEFLGL 60

Query: 61  LDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVP 120
            D+H    +N   V  SKVN++ITDYCMPGM+GYELLKKIK  S MKEVPVV++SSEN+P
Sbjct: 61  GDQHNSLESN---VSNSKVNLVITDYCMPGMTGYELLKKIKESSIMKEVPVVIMSSENIP 120

Query: 121 TRINKCLEEGAEMFMLKPLKQSDVVKLK 145
            RINKCLEEGA+MFMLKPLKQSD+ KL+
Sbjct: 121 NRINKCLEEGAQMFMLKPLKQSDMKKLR 145

The following BLAST results are available for this feature:

BLAST of CmaCh04G001000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARR17_ARATH	1.7e-43	68.46	Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=...	[more]
ARR16_ARATH	2.5e-42	66.92	Two-component response regulator ARR16 OS=Arabidopsis thaliana GN=ARR16 PE=1 SV=...	[more]
ORR9_ORYSI	2.0e-39	60.61	Two-component response regulator ORR9 OS=Oryza sativa subsp. indica GN=RR9 PE=2 ...	[more]
ORR9_ORYSJ	2.0e-39	60.61	Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica GN=RR9 PE=...	[more]
ORR10_ORYSJ	2.0e-39	60.61	Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica GN=RR10 P...	[more]

BLAST of CmaCh04G001000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMB0_CUCSA	1.2e-59	81.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223020 PE=4 SV=1	[more]
C6SX49_SOYBN	9.6e-49	73.29	Uncharacterized protein OS=Glycine max GN=GLYMA_04G223000 PE=2 SV=1	[more]
V4T7K2_9ROSI	9.6e-49	73.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032983mg PE=4 SV=1	[more]
A0A067FMZ9_CITSI	9.6e-49	73.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042079mg PE=4 SV=1	[more]
A0A0B2QW54_GLYSO	1.2e-48	72.60	Two-component response regulator ARR17 OS=Glycine soja GN=glysoja_038301 PE=4 SV...	[more]

BLAST of CmaCh04G001000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56380.1	9.8e-45	68.46	response regulator 17	[more]
AT2G40670.2	2.7e-42	66.41	response regulator 16	[more]
AT1G59940.1	5.7e-37	60.31	response regulator 3	[more]
AT3G57040.1	7.5e-37	55.07	response regulator 9	[more]
AT2G41310.1	9.8e-37	54.35	response regulator 3	[more]

BLAST of CmaCh04G001000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701578\|ref\|XP_011655050.1\|	3.1e-61	83.23	PREDICTED: two-component response regulator ARR17 isoform X2 [Cucumis sativus]	[more]
gi\|449457395\|ref\|XP_004146434.1\|	1.7e-59	81.13	PREDICTED: two-component response regulator ARR17 isoform X1 [Cucumis sativus]	[more]
gi\|1012256750\|ref\|XP_015945037.1\|	2.5e-50	70.13	PREDICTED: two-component response regulator ARR17-like [Arachis duranensis]	[more]
gi\|1021576127\|ref\|XP_016179276.1\|	2.5e-50	70.13	PREDICTED: two-component response regulator ARR17-like [Arachis ipaensis]	[more]
gi\|694373205\|ref\|XP_009363791.1\|	1.6e-49	72.97	PREDICTED: two-component response regulator ARR17 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001789	Sig_transdc_resp-reg_receiver
IPR011006	CheY-like_superfamily

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G001000.1	CmaCh04G001000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 17..142 score: 1.8
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 15..144 score: 1.1
IPR001789	Signal transduction response regulator, receiver domain	PROFILE	PS50110	RESPONSE_REGULATORY	coord: 16..146 score: 33
IPR011006	CheY-like superfamily	unknown	SSF52172	CheY-like	coord: 15..141 score: 5.98
None	No IPR available	GENE3D	G3DSA:3.40.50.2300		coord: 14..142 score: 4.2
None	No IPR available	PANTHER	PTHR26402	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	coord: 15..54 score: 1.1E-69coord: 71..145 score: 1.1
None	No IPR available	PANTHER	PTHR26402:SF521	TWO-COMPONENT RESPONSE REGULATOR ARR16-RELATED	coord: 15..54 score: 1.1E-69coord: 71..145 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G001000	Cucsa.143870	Cucumber (Gy14) v1	cgycmaB0401
CmaCh04G001000	Cla007300	Watermelon (97103) v1	cmawmB691
CmaCh04G001000	Csa5G223020	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G001000	ClCG07G005170	Watermelon (Charleston Gray)	cmawcgB674
CmaCh04G001000	CSPI05G11620	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G001000	CmoCh04G000990	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G001000	Lsi04G010150	Bottle gourd (USVL1VR-Ls)	cmalsiB671
CmaCh04G001000	Cp4.1LG01g05900	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G001000	CsaV3_5G011030	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G001000	CsaV3_5G036740	Cucumber (Chinese Long) v3	cmacucB0894
CmaCh04G001000	Cla97C07G133530	Watermelon (97103) v2	cmawmbB781
CmaCh04G001000	Bhi07G000410	Wax gourd	cmawgoB0890
CmaCh04G001000	CsGy5G008880	Cucumber (Gy14) v2	cgybcmaB674
CmaCh04G001000	Carg24469	Silver-seed gourd	carcmaB1249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G001000	Cucurbita maxima (Rimu)	cmacmaB531
CmaCh04G001000	Cucumber (Gy14) v1	cgycmaB0493
CmaCh04G001000	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G001000	Wild cucumber (PI 183967)	cmacpiB740
CmaCh04G001000	Melon (DHL92) v3.5.1	cmameB643
CmaCh04G001000	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G001000	Bottle gourd (USVL1VR-Ls)	cmalsiB660
CmaCh04G001000	Cucumber (Gy14) v2	cgybcmaB660
CmaCh04G001000	Melon (DHL92) v3.6.1	cmamedB743
CmaCh04G001000	Silver-seed gourd	carcmaB0949
CmaCh04G001000	Cucumber (Chinese Long) v3	cmacucB0873
CmaCh04G001000	Watermelon (97103) v2	cmawmbB729