Cp4.1LG01g03090 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g03090
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSmall subunit ribosomal protein, putative
LocationCp4.1LG01 : 2023142 .. 2025405 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAGGAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTGTTCGTTCGACATTCGTATTCTCGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGTGAATTTTATTTTTTACTTGCTATCTGATTCGGGAAATGACGATTATCGGCACTTATAATTTATGTTCTAAATGGGGTTTGGCGTTTTAGGTATAGGAAAGGTTTGTTATGTGATTAAGATCTTTCTTTTTGAATCTATTGATTTTAACGATTCAATGCATTTGCTTTTCACTAAAGAGAGATAAAGTTAAGGATGTCATTTTCTGGCGAAGTGAATTTTTCGAGTGTTTTCTTTTGCGGATCGCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCTTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGTTTTTCTTTTCATATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTATGTGGCTATAGTTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTAGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTTAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATCTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAAGAAGGTGTTCCACATGGTTCTGAATAGAAGAAGGATGGAGCACAAAATAACATGTTATCTACAGGTTCCTTGGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGATGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGTAACACTCCAATAAAAAA

mRNA sequence

TAAGGAAAAAAAGAGCACTATAATTGGGCCGGCAAGTAAGTTAGGGTTTTTTTGTTCGTTCGACATTCGTATTCTCGGAACCTCTGCTGCGGCCGATCGACGACGATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAGGTGTATGGGACTGGAATCTTGATGATGATGTCTTTTTATCTTTGTTGGAAAGTTTTCCTGGTTCAAATGGATGTAGCTCGCCTTCAAGTTCCTACTTGCCCTTTGCAATAATGATGACAATTGGATGTTTTTCTTTTCATATACATCAGTGTAAAATTTTCCAGGTTTAAATTGATGTAGGTTGCCTTCAAGTGTTCACTTACTGCAGTAACGATGACGACGGGATGTTTTTATATACACCAACATCAAATAAGTGTTTTCTTTTTATTCAAGTTCAACGACACGTGAGATTGAAAGATTCGAAACAGCCTCTTGATATATGCCTTATCTGTTTGGACTTCATTTGAGATATGCAATATCAACTTTCTCCTTGCAGTTGTGCACCACAAAAAATTCTTGTGGCCAGTGTCCAATCTTTTTATGTGGCTATAGTTTCTTTCCTGTTGTGGATTATACATTTCTCTGATCTTACTTCTATCTCTTGACTCATAGCCTGGAATGCTTGTTTTACCTTTAGCATGAAAGATATTAGTCTCTAATTGTGACCAGATTGCGCCTACCTCATGAAAAGACAAGGGAAAGTAGCTGGTTTGACTACAGGACAGAGAGAGCTATTACAGTGATTTGATCAACATTTTTGTGTGCTGAATTTCTTATGAAAATTTGCAGGCTTTTTGATCATTGATGGTGGATTTATATTATGTATCTGGTCCCTTAGCATGGATGAGCCATGGGCATAGCATGGAGTTGTTTGCTAACAGAGAGCTATCTTTGAACCAGAAAGTGTTAATGCATAGCTCGTAGAAGAAGGTGTTCCACATGGTTCTGAATAGAAGAAGGATGGAGCACAAAATAACATGTTATCTACAGGTTCCTTGGTATTATGGCTCATTTCAGGTTACTGCTGCGCCCATGGTTGCCTACTGAGCCTTTTCTGGCGATGTGATGTGCTATGGAAATGAATAATGCACTTGTCACTCTGTAATATTAAATGGTAATTTAACCTCGACAATACACGTGTTTATTTTGCAGTAACACTCCAATAAAAAA

Coding sequence (CDS)

ATGCGGAGACTTCCCCTCCCTCACCTCTCTTCTCTCTTCCGTTCCTCCTCTCTCTCTCATGGCTCTTCCTTCTCTTCTTCTCGCCTCTCCATTTCTCCATTTTTTGGCACTGATGCTCGTTCTCCCATGTCCTCTCTCCACTTTTCTCGCGGATCGGAGATCTCTGGATCCGTTCAAATAGACAGGCAGGATTCAGGCTGTGTGGACCTTCCACGTGGTGATTCTGTGAATGTTGGACGGGAGATTGTAGGACGTGCTGGGAAAGGATTGGGAGCTCAAGGGCCTTGTTGGGGTTTGGCGCGTTCGAGTGAAAATGTCTCTGTTCCTTATTCTTCTAGCTCTAGATGTTATGTACACTACGATGGCCGGCCGAATGCTGATACAGGAAGGAACTTTAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATCGAATGGATTTTATGGGTAGTTCTCAGTTTCCTAGACCACCCAATATGGAGCACAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTTACGGATAACAAAGGAAACACAAAGCTTAAGGCCTCTTCTGGCCGTCTTGAAGAACTGAAAGGAGGGCCTAAACTGTCCCGTTATGCTGCCGAAGCAACTGCAGAGTATGTTGGCCGTGAATCTAAAAAATTGGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAAACAAGCGATCTTGAGTTGGAGAGATGGTTTTACAGATTCTAAACGTGATCAAAATCCAATTGTTTACATTGAAGATACTACAAGACGTGCTCACAACGGTTGCAGACTTCCAAAGCAACGCCGTGTCTAG

Protein sequence

MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQIDRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV
BLAST of Cp4.1LG01g03090 vs. Swiss-Prot
Match: RT11_ARATH (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-50
Identity = 94/164 (57.32%), Postives = 131/164 (79.88%), Query Frame = 1

Query: 123 RPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVT 182
           + N+ +G     ++FVR ++E++     G     + PN+E NADI+H+K++RNNTF+TVT
Sbjct: 151 KENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 210

Query: 183 DNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKK 242
           D+KGN K KA+SG L +LKGG K++ Y A+ATAE +GR +K +GLKSVV++V GFT+F K
Sbjct: 211 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 270

Query: 243 KKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           KK+AI+++RDGFT+S+ DQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 271 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

BLAST of Cp4.1LG01g03090 vs. Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-12
Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 1

Query: 160 NMEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVG 219
           NM+    I +++    NT IT+TD  GNTK  +SSG +   KG  + + YAA+ATAE   
Sbjct: 9   NMQKKHCITYIQSTFGNTIITLTDYNGNTKTWSSSGSVG-FKGSRRSTNYAAQATAENAA 68

Query: 220 RESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCR 279
           R + +LG K V +R+KG  Y K+     L         K     I  I D T   HNGCR
Sbjct: 69  RVAIQLGFKFVEVRIKGLGYGKESSLRGL---------KLGGLIITKIRDVTPTPHNGCR 125

Query: 280 LPKQRRV 287
            PK+RRV
Sbjct: 129 PPKKRRV 125

BLAST of Cp4.1LG01g03090 vs. Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-11
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 1

Query: 161 MEHNADIVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGR 220
           +E  + IVH++   NNT IT+TD +GNT+   S+G L   K   K + YA+ A AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 221 ESKKLGLKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRL 280
           ++   G +++++++KG  Y KK               ++    I  I++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRP 128

Query: 281 PKQRRV 287
           PK+RRV
Sbjct: 133 PKKRRV 128

BLAST of Cp4.1LG01g03090 vs. Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLG 226
           IVHV    NNT +T+TD +GNT   +SSG +   KG  K + YAA+  AE   +++K+ G
Sbjct: 20  IVHVNSSFNNTMVTITDAQGNTISWSSSGVMN-FKGSRKSTPYAAQMAAEDAAKKAKEHG 79

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286
           L++V +RV+G    ++     L    G T        +  I DTT   HNGCR PK+RRV
Sbjct: 80  LQTVEVRVRGPGSGRESALRALQ-AAGLT--------VTAINDTTPIPHNGCRPPKRRRV 129

BLAST of Cp4.1LG01g03090 vs. Swiss-Prot
Match: RS11_ARCB4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-10
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1

Query: 167 IVHVKLMRNNTFITVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLG 226
           IVH+    NNT +TVTDN GN    +S+G L   KG  K + +AA+A  E    ++ + G
Sbjct: 20  IVHIAASFNNTMVTVTDNAGNAIAWSSAGNLG-FKGSKKSTPFAAQAAVEDAMNKAMEHG 79

Query: 227 LKSVVMRVKGFTYFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286
           +K+V ++++G    +      +   DG          + +++D T  AHNGCR PK+RRV
Sbjct: 80  IKNVGIKIQGPGSGRDTAVKAVGSMDGVR--------VTWLKDVTPLAHNGCRPPKRRRV 130

BLAST of Cp4.1LG01g03090 vs. TrEMBL
Match: A0A0A0KVQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.5e-106
Identity = 211/287 (73.52%), Postives = 234/287 (81.53%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQI 60
           M +L L HLSSLFRSSSLS   SFS SRLSISPF G+DA S MSSLH    S+++GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLH---RSDLTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR  K +G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKAS+GRLE   GG KLSRY+A++ AEYVGRES+KLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

BLAST of Cp4.1LG01g03090 vs. TrEMBL
Match: A0A067EMW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61
Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1

Query: 69  DLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADT 128
           ++ RG+S      ++G  G  L A           +NV+ PY+   R ++H  G+ + +T
Sbjct: 44  NVARGESGRSLPRVLGNLGMNLCA-------VSVEQNVAAPYALGFRNFIHSTGQGDDET 103

Query: 129 GRNFKSMNFVRGILEEDRMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKG 188
           GR+ + M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KG
Sbjct: 104 GRSSRPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKG 163

Query: 189 NTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQA 248
           N ++ ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QA
Sbjct: 164 NKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQA 223

Query: 249 ILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+S+R+GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 224 IMSFREGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of Cp4.1LG01g03090 vs. TrEMBL
Match: V4U9L5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61
Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1

Query: 69  DLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADT 128
           ++ RG+S      ++G  G  L A           +NV+ PY+   R ++H  G+ + +T
Sbjct: 44  NVARGESGRSLPRVLGNLGMNLCA-------VSVEQNVAAPYALGFRNFIHSTGQGDDET 103

Query: 129 GRNFKSMNFVRGILEEDRMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKG 188
           GR+ + M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KG
Sbjct: 104 GRSSRPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKG 163

Query: 189 NTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQA 248
           N ++ ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QA
Sbjct: 164 NKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQA 223

Query: 249 ILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+S+R+GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 224 IMSFREGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of Cp4.1LG01g03090 vs. TrEMBL
Match: F6I489_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.9e-59
Identity = 114/167 (68.26%), Postives = 142/167 (85.03%), Query Frame = 1

Query: 120 YDGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+DR +  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ ASSG L E+KGGPKLSRYAA+ATAE+VGR ++ LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  S+ D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

BLAST of Cp4.1LG01g03090 vs. TrEMBL
Match: M5VQ17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.4e-57
Identity = 114/160 (71.25%), Postives = 137/160 (85.62%), Query Frame = 1

Query: 127 DTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKG 186
           +  RN +SMNFVRGILEED  + +G SQFPR  NME NADIVH+KLM+NNTF+TVTD+KG
Sbjct: 51  NVSRNSRSMNFVRGILEEDGKENIGFSQFPRY-NMEQNADIVHIKLMKNNTFVTVTDSKG 110

Query: 187 NTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQA 246
             KL AS+G L  +KGGPKLS+YAAEATAE+VGR ++  GLKSVV++VKGFTYFKKK+QA
Sbjct: 111 KKKLGASAGSLPGMKGGPKLSKYAAEATAEHVGRMARNFGLKSVVVKVKGFTYFKKKRQA 170

Query: 247 ILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+SW++GFT+SK   NPIVYIEDTTR+ HNGCRLPK+RRV
Sbjct: 171 IVSWKEGFTNSKVGLNPIVYIEDTTRKPHNGCRLPKKRRV 209

BLAST of Cp4.1LG01g03090 vs. TAIR10
Match: AT1G31817.1 (AT1G31817.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-51
Identity = 94/164 (57.32%), Postives = 131/164 (79.88%), Query Frame = 1

Query: 123 RPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVT 182
           + N+ +G     ++FVR ++E++     G     + PN+E NADI+H+K++RNNTF+TVT
Sbjct: 151 KENSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVT 210

Query: 183 DNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKK 242
           D+KGN K KA+SG L +LKGG K++ Y A+ATAE +GR +K +GLKSVV++V GFT+F K
Sbjct: 211 DSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGK 270

Query: 243 KKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           KK+AI+++RDGFT+S+ DQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 271 KKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

BLAST of Cp4.1LG01g03090 vs. NCBI nr
Match: gi|449438783|ref|XP_004137167.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105
Identity = 211/287 (73.52%), Postives = 234/287 (81.53%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQI 60
           M +L L HLSSLFRSSSLS   SFS SRLSISPF G+DA S MSSLH    S+++GS+Q 
Sbjct: 1   MPKLSLSHLSSLFRSSSLSPAPSFSPSRLSISPFIGSDAPSRMSSLH---RSDLTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
             Q SGC+     DS NVGREIVGR  K +G QGP  GLAR SE VS+PYS SSRCY  Y
Sbjct: 61  HNQFSGCLR----DSANVGREIVGRGWKSMGVQGPSSGLARPSEGVSIPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K MNFVRGILEE+   F G+ QF RP NMEHNADIVH+KLMRNN+F+
Sbjct: 121 DNRPNPPDTGRNLKPMNFVRGILEEEERGFFGTPQFLRPSNMEHNADIVHIKLMRNNSFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 240
           TVTDNKGNTKLKAS+GRLE   GG KLSRY+A++ AEYVGRES+KLGLKSVVMRVKGFT+
Sbjct: 181 TVTDNKGNTKLKASAGRLE---GGAKLSRYSADSIAEYVGRESRKLGLKSVVMRVKGFTF 240

Query: 241 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAILSWRDGFTDS+ DQNPIVY+EDTTRRAHNGCRLPK+RRV
Sbjct: 241 FKKKKQAILSWRDGFTDSRTDQNPIVYVEDTTRRAHNGCRLPKKRRV 277

BLAST of Cp4.1LG01g03090 vs. NCBI nr
Match: gi|659111225|ref|XP_008455641.1| (PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo])

HSP 1 Score: 375.2 bits (962), Expect = 1.0e-100
Identity = 205/288 (71.18%), Postives = 227/288 (78.82%), Query Frame = 1

Query: 1   MRRLPLPHLSSLFRSSSLSHGSSFSSSRLSISPFFGTDARSPMSSLHFSRGSEISGSVQI 60
           M +L L HLS LFRSSSLS   SFS SRLSISPF G+DA S  SS      S ++GS+Q 
Sbjct: 1   MPKLSLSHLSPLFRSSSLSRSPSFSPSRLSISPFIGSDAPSRFSS---PLPSHLTGSLQP 60

Query: 61  DRQDSGCVDLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHY 120
               SG          +VGREIVGR  K +G QGP WGLARS+E+VSVPYS SSRCY  Y
Sbjct: 61  HNHFSG----------SVGREIVGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEY 120

Query: 121 DGRPNA-DTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 180
           D RPN  DTGRN K++NFVRGILEED   F    Q+ RP NMEHNADIVH+KLMRNN F+
Sbjct: 121 DNRPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFV 180

Query: 181 TVTDNKGNTKLKASSGRLEELKGG-PKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFT 240
           TVTDNKGNTKLKAS+GRLEELKGG  KLSRY+ ++ AEYVGRES+KLGLKSVVMRVKGFT
Sbjct: 181 TVTDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFT 240

Query: 241 YFKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           +FKKKKQAILSWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 241 FFKKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

BLAST of Cp4.1LG01g03090 vs. NCBI nr
Match: gi|567906735|ref|XP_006445681.1| (hypothetical protein CICLE_v10016360mg [Citrus clementina])

HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61
Identity = 127/220 (57.73%), Postives = 167/220 (75.91%), Query Frame = 1

Query: 69  DLPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADT 128
           ++ RG+S      ++G  G  L A           +NV+ PY+   R ++H  G+ + +T
Sbjct: 44  NVARGESGRSLPRVLGNLGMNLCA-------VSVEQNVAAPYALGFRNFIHSTGQGDDET 103

Query: 129 GRNFKSMNFVRGILEEDRMDFMGSSQFPRPP--NMEHNADIVHVKLMRNNTFITVTDNKG 188
           GR+ + M+FVRGI+EED   F G SQF + P  N+EH+++ VH+KLMRNNTF+TVTD+KG
Sbjct: 104 GRSSRPMDFVRGIVEEDEKRFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKG 163

Query: 189 NTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQA 248
           N ++ ASSG L ELKGGPK+SRYAAEATAE+VGR ++ +GLKSVV+RVKGFTYFKKK+QA
Sbjct: 164 NKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQA 223

Query: 249 ILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           I+S+R+GF +S RDQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 224 IMSFREGFANS-RDQNPIVYIEDTTRRPHNGCRLPKKRRI 255

BLAST of Cp4.1LG01g03090 vs. NCBI nr
Match: gi|731390545|ref|XP_010650403.1| (PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera])

HSP 1 Score: 235.7 bits (600), Expect = 9.8e-59
Identity = 114/167 (68.26%), Postives = 142/167 (85.03%), Query Frame = 1

Query: 120 YDGRPNADTGRNFKSMNFVRGILEEDRMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFI 179
           + G  + + GRN +SMNFVRGI+E+DR +  GS+QFPR   +E N DIVH+KL+RNN F+
Sbjct: 33  FPGSRDFEMGRNSRSMNFVRGIIEQDRRNIPGSAQFPRY-TVEQNPDIVHIKLIRNNAFV 92

Query: 180 TVTDNKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTY 239
           TVTD+KGN K+ ASSG L E+KGGPKLSRYAA+ATAE+VGR ++ LGLKSVVM+VKGFTY
Sbjct: 93  TVTDSKGNKKIGASSGCLSEMKGGPKLSRYAADATAEHVGRLARNLGLKSVVMKVKGFTY 152

Query: 240 FKKKKQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           FKKKKQAI+SW++GF  S+ D+NPI+YIEDTTRR HNGCRLP++RRV
Sbjct: 153 FKKKKQAIMSWKEGFNSSRGDENPIMYIEDTTRRPHNGCRLPRKRRV 198

BLAST of Cp4.1LG01g03090 vs. NCBI nr
Match: gi|1009158586|ref|XP_015897366.1| (PREDICTED: probable ribosomal protein S11, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 122/218 (55.96%), Postives = 155/218 (71.10%), Query Frame = 1

Query: 70  LPRGDSVNVGREIVGRAGKGLGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGRPNADTG 129
           +P+G   +  RE+ G +G                 + + PY+   +  +H     + +  
Sbjct: 61  IPKGKIADNARELSGSSGL----------------SGTPPYALGFQHSIHSTNEKDFENR 120

Query: 130 RNFKSMNFVRGILEEDRMDFMGS-SQFPRPPNMEHNADIVHVKLMRNNTFITVTDNKGNT 189
           RN  SMNFVR ++E+D  D M S  + PR  N+E NAD VH+KLMRNNTF+TVTD+KG  
Sbjct: 121 RNSPSMNFVRSVVEDDGRDMMRSRGRLPRY-NVEQNADFVHIKLMRNNTFVTVTDSKGKK 180

Query: 190 KLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKKKQAIL 249
           K+ ASSG L E+KGG KLSRYAAEATAE+VGR ++ LGLKSVVM+VKGFTYFKKK+QAI+
Sbjct: 181 KIGASSGMLPEMKGGAKLSRYAAEATAEHVGRMARNLGLKSVVMKVKGFTYFKKKRQAIM 240

Query: 250 SWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 287
           SWR+GFT+S+ DQNPIVYIEDTTRR HNGCRLPK+RR+
Sbjct: 241 SWREGFTNSRGDQNPIVYIEDTTRRPHNGCRLPKKRRI 261

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RT11_ARATH2.2e-5057.32Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE... [more]
RT11_MARPO4.1e-1240.16Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2[more]
RT11_PROWI3.4e-1134.92Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=... [more]
RS11_HYPNA1.0e-1040.0030S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE... [more]
RS11_ARCB45.0e-1035.0030S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) GN=rpsK PE=3 SV... [more]
Match NameE-valueIdentityDescription
A0A0A0KVQ8_CUCSA7.5e-10673.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G107470 PE=3 SV=1[more]
A0A067EMW2_CITSI1.9e-6157.73Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025294mg PE=3 SV=1[more]
V4U9L5_9ROSI1.9e-6157.73Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016360mg PE=3 SV=1[more]
F6I489_VITVI6.9e-5968.26Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g00880 PE=3 SV=... [more]
M5VQ17_PRUPE6.4e-5771.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011457mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G31817.11.2e-5157.32 Ribosomal L18p/L5e family protein[more]
Match NameE-valueIdentityDescription
gi|449438783|ref|XP_004137167.1|1.1e-10573.52PREDICTED: probable ribosomal protein S11, mitochondrial [Cucumis sativus][more]
gi|659111225|ref|XP_008455641.1|1.0e-10071.18PREDICTED: uncharacterized protein LOC103495763 [Cucumis melo][more]
gi|567906735|ref|XP_006445681.1|2.8e-6157.73hypothetical protein CICLE_v10016360mg [Citrus clementina][more]
gi|731390545|ref|XP_010650403.1|9.8e-5968.26PREDICTED: ribosomal protein S11, mitochondrial [Vitis vinifera][more]
gi|1009158586|ref|XP_015897366.1|2.4e-5755.96PREDICTED: probable ribosomal protein S11, mitochondrial [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03090.1Cp4.1LG01g03090.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11GENE3DG3DSA:3.30.420.80coord: 161..286
score: 7.8
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 133..286
score: 16
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 126..286
score: 4.4
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 167..285
score: 7.5
NoneNo IPR availablePANTHERPTHR11759:SF830S RIBOSOMAL PROTEIN S11-RELATEDcoord: 126..286
score: 4.4
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 165..286
score: 1.24

The following gene(s) are paralogous to this gene:

None